Experiment: Ethanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS19545 and ABIE40_RS19550 are separated by 103 nucleotides ABIE40_RS19550 and ABIE40_RS19555 are separated by 11 nucleotides ABIE40_RS19555 and ABIE40_RS19560 overlap by 4 nucleotides
ABIE40_RS19545: ABIE40_RS19545 - SDR family oxidoreductase, at 4,892 to 5,686
_RS19545
ABIE40_RS19550: ABIE40_RS19550 - 3-oxoadipyl-CoA thiolase, at 5,790 to 6,995
_RS19550
ABIE40_RS19555: ABIE40_RS19555 - CoA transferase subunit B, at 7,007 to 7,696
_RS19555
ABIE40_RS19560: ABIE40_RS19560 - 3-oxoacid CoA-transferase subunit A, at 7,693 to 8,400
_RS19560
Position (kb) 5
6
7 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4.794 kb on + strand at 4.893 kb on + strand at 4.941 kb on + strand at 4.974 kb on + strand, within ABIE40_RS19545 at 4.974 kb on + strand, within ABIE40_RS19545 at 4.975 kb on - strand, within ABIE40_RS19545 at 4.975 kb on - strand, within ABIE40_RS19545 at 5.056 kb on + strand, within ABIE40_RS19545 at 5.056 kb on + strand, within ABIE40_RS19545 at 5.056 kb on + strand, within ABIE40_RS19545 at 5.057 kb on - strand, within ABIE40_RS19545 at 5.058 kb on + strand, within ABIE40_RS19545 at 5.058 kb on + strand, within ABIE40_RS19545 at 5.058 kb on + strand, within ABIE40_RS19545 at 5.058 kb on + strand, within ABIE40_RS19545 at 5.059 kb on - strand, within ABIE40_RS19545 at 5.059 kb on - strand, within ABIE40_RS19545 at 5.182 kb on - strand, within ABIE40_RS19545 at 5.325 kb on + strand, within ABIE40_RS19545 at 5.326 kb on - strand, within ABIE40_RS19545 at 5.338 kb on + strand, within ABIE40_RS19545 at 5.338 kb on + strand, within ABIE40_RS19545 at 5.338 kb on + strand, within ABIE40_RS19545 at 5.339 kb on - strand, within ABIE40_RS19545 at 5.339 kb on - strand, within ABIE40_RS19545 at 5.340 kb on + strand, within ABIE40_RS19545 at 5.340 kb on + strand, within ABIE40_RS19545 at 5.341 kb on - strand, within ABIE40_RS19545 at 5.341 kb on - strand, within ABIE40_RS19545 at 5.341 kb on - strand, within ABIE40_RS19545 at 5.468 kb on + strand, within ABIE40_RS19545 at 5.468 kb on + strand, within ABIE40_RS19545 at 5.468 kb on + strand, within ABIE40_RS19545 at 5.468 kb on + strand, within ABIE40_RS19545 at 5.468 kb on + strand, within ABIE40_RS19545 at 5.469 kb on - strand, within ABIE40_RS19545 at 5.469 kb on - strand, within ABIE40_RS19545 at 5.469 kb on - strand, within ABIE40_RS19545 at 5.481 kb on + strand, within ABIE40_RS19545 at 5.482 kb on + strand, within ABIE40_RS19545 at 5.483 kb on - strand, within ABIE40_RS19545 at 5.483 kb on - strand, within ABIE40_RS19545 at 5.483 kb on - strand, within ABIE40_RS19545 at 5.483 kb on - strand, within ABIE40_RS19545 at 5.483 kb on - strand, within ABIE40_RS19545 at 5.541 kb on + strand, within ABIE40_RS19545 at 5.541 kb on + strand, within ABIE40_RS19545 at 5.541 kb on + strand, within ABIE40_RS19545 at 5.542 kb on - strand, within ABIE40_RS19545 at 5.703 kb on + strand at 5.719 kb on + strand at 5.719 kb on + strand at 5.719 kb on + strand at 5.719 kb on + strand at 5.720 kb on - strand at 5.720 kb on - strand at 5.725 kb on + strand at 5.725 kb on + strand at 5.725 kb on + strand at 5.725 kb on + strand at 5.725 kb on + strand at 5.725 kb on + strand at 5.726 kb on - strand at 5.726 kb on - strand at 5.726 kb on - strand at 5.726 kb on - strand at 5.726 kb on - strand at 5.738 kb on + strand at 5.739 kb on - strand at 5.855 kb on - strand at 6.116 kb on + strand, within ABIE40_RS19550 at 6.117 kb on - strand, within ABIE40_RS19550 at 6.117 kb on - strand, within ABIE40_RS19550 at 6.117 kb on - strand, within ABIE40_RS19550 at 6.175 kb on + strand, within ABIE40_RS19550 at 6.175 kb on + strand, within ABIE40_RS19550 at 6.175 kb on + strand, within ABIE40_RS19550 at 6.176 kb on - strand, within ABIE40_RS19550 at 6.176 kb on - strand, within ABIE40_RS19550 at 6.356 kb on + strand, within ABIE40_RS19550 at 6.356 kb on + strand, within ABIE40_RS19550 at 6.475 kb on + strand, within ABIE40_RS19550 at 6.475 kb on + strand, within ABIE40_RS19550 at 6.475 kb on + strand, within ABIE40_RS19550 at 6.475 kb on + strand, within ABIE40_RS19550 at 6.476 kb on - strand, within ABIE40_RS19550 at 6.476 kb on - strand, within ABIE40_RS19550 at 6.523 kb on + strand, within ABIE40_RS19550 at 6.523 kb on + strand, within ABIE40_RS19550 at 6.523 kb on + strand, within ABIE40_RS19550 at 6.524 kb on - strand, within ABIE40_RS19550 at 6.524 kb on - strand, within ABIE40_RS19550 at 6.746 kb on + strand, within ABIE40_RS19550 at 6.746 kb on + strand, within ABIE40_RS19550 at 6.753 kb on + strand, within ABIE40_RS19550 at 6.754 kb on - strand, within ABIE40_RS19550 at 6.970 kb on + strand at 6.970 kb on + strand at 6.971 kb on - strand at 6.971 kb on - strand at 6.971 kb on - strand at 7.008 kb on + strand at 7.009 kb on - strand at 7.048 kb on + strand at 7.048 kb on + strand at 7.156 kb on + strand, within ABIE40_RS19555 at 7.156 kb on + strand, within ABIE40_RS19555 at 7.157 kb on - strand, within ABIE40_RS19555 at 7.157 kb on - strand, within ABIE40_RS19555 at 7.158 kb on + strand, within ABIE40_RS19555 at 7.158 kb on + strand, within ABIE40_RS19555 at 7.159 kb on - strand, within ABIE40_RS19555 at 7.159 kb on - strand, within ABIE40_RS19555 at 7.159 kb on - strand, within ABIE40_RS19555 at 7.360 kb on - strand, within ABIE40_RS19555 at 7.696 kb on + strand at 7.696 kb on + strand at 7.696 kb on + strand at 7.696 kb on + strand at 7.696 kb on + strand at 7.696 kb on + strand at 7.696 kb on + strand at 7.696 kb on + strand at 7.696 kb on + strand at 7.696 kb on + strand at 7.696 kb on + strand at 7.696 kb on + strand at 7.696 kb on + strand at 7.697 kb on - strand at 7.697 kb on - strand at 7.697 kb on - strand at 7.697 kb on - strand at 7.697 kb on - strand at 7.697 kb on - strand at 7.697 kb on - strand at 7.697 kb on - strand at 7.697 kb on - strand at 7.700 kb on + strand at 7.701 kb on - strand at 7.701 kb on - strand at 7.786 kb on + strand, within ABIE40_RS19560 at 7.786 kb on + strand, within ABIE40_RS19560 at 7.786 kb on + strand, within ABIE40_RS19560 at 7.787 kb on - strand, within ABIE40_RS19560 at 7.890 kb on + strand, within ABIE40_RS19560 at 7.891 kb on - strand, within ABIE40_RS19560 at 7.891 kb on - strand, within ABIE40_RS19560 at 7.895 kb on + strand, within ABIE40_RS19560 at 7.896 kb on - strand, within ABIE40_RS19560 at 7.896 kb on - strand, within ABIE40_RS19560 at 7.973 kb on + strand, within ABIE40_RS19560 at 7.973 kb on + strand, within ABIE40_RS19560 at 7.973 kb on + strand, within ABIE40_RS19560 at 7.973 kb on + strand, within ABIE40_RS19560 at 7.973 kb on + strand, within ABIE40_RS19560 at 7.973 kb on + strand, within ABIE40_RS19560 at 7.973 kb on + strand, within ABIE40_RS19560 at 7.974 kb on - strand, within ABIE40_RS19560 at 7.974 kb on - strand, within ABIE40_RS19560
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol (C) remove 4,794 + +0.2 4,893 + +0.9 4,941 + -1.2 4,974 + ABIE40_RS19545 0.10 +0.9 4,974 + ABIE40_RS19545 0.10 +1.6 4,975 - ABIE40_RS19545 0.10 -1.2 4,975 - ABIE40_RS19545 0.10 +0.2 5,056 + ABIE40_RS19545 0.21 -1.0 5,056 + ABIE40_RS19545 0.21 +3.5 5,056 + ABIE40_RS19545 0.21 -0.6 5,057 - ABIE40_RS19545 0.21 -0.5 5,058 + ABIE40_RS19545 0.21 +0.1 5,058 + ABIE40_RS19545 0.21 +1.1 5,058 + ABIE40_RS19545 0.21 -0.5 5,058 + ABIE40_RS19545 0.21 +0.0 5,059 - ABIE40_RS19545 0.21 -0.6 5,059 - ABIE40_RS19545 0.21 -2.6 5,182 - ABIE40_RS19545 0.36 -0.4 5,325 + ABIE40_RS19545 0.54 +0.3 5,326 - ABIE40_RS19545 0.55 +3.3 5,338 + ABIE40_RS19545 0.56 -0.3 5,338 + ABIE40_RS19545 0.56 +0.2 5,338 + ABIE40_RS19545 0.56 +0.3 5,339 - ABIE40_RS19545 0.56 -0.0 5,339 - ABIE40_RS19545 0.56 +0.4 5,340 + ABIE40_RS19545 0.56 -0.2 5,340 + ABIE40_RS19545 0.56 -0.4 5,341 - ABIE40_RS19545 0.56 -1.4 5,341 - ABIE40_RS19545 0.56 +2.8 5,341 - ABIE40_RS19545 0.56 +0.4 5,468 + ABIE40_RS19545 0.72 -0.2 5,468 + ABIE40_RS19545 0.72 +0.3 5,468 + ABIE40_RS19545 0.72 +1.0 5,468 + ABIE40_RS19545 0.72 +1.7 5,468 + ABIE40_RS19545 0.72 -0.2 5,469 - ABIE40_RS19545 0.73 +1.1 5,469 - ABIE40_RS19545 0.73 +0.8 5,469 - ABIE40_RS19545 0.73 -0.4 5,481 + ABIE40_RS19545 0.74 -0.5 5,482 + ABIE40_RS19545 0.74 -0.5 5,483 - ABIE40_RS19545 0.74 +1.5 5,483 - ABIE40_RS19545 0.74 -0.3 5,483 - ABIE40_RS19545 0.74 -1.1 5,483 - ABIE40_RS19545 0.74 -2.6 5,483 - ABIE40_RS19545 0.74 +0.3 5,541 + ABIE40_RS19545 0.82 +0.0 5,541 + ABIE40_RS19545 0.82 +1.0 5,541 + ABIE40_RS19545 0.82 -0.2 5,542 - ABIE40_RS19545 0.82 +0.0 5,703 + -0.7 5,719 + +1.3 5,719 + -0.4 5,719 + -1.4 5,719 + +0.3 5,720 - -0.7 5,720 - +0.3 5,725 + -0.9 5,725 + +0.2 5,725 + +1.0 5,725 + -0.0 5,725 + +1.5 5,725 + -0.6 5,726 - +0.3 5,726 - +0.8 5,726 - +0.1 5,726 - +0.4 5,726 - -0.6 5,738 + -1.8 5,739 - -0.2 5,855 - -0.8 6,116 + ABIE40_RS19550 0.27 -0.5 6,117 - ABIE40_RS19550 0.27 -0.3 6,117 - ABIE40_RS19550 0.27 +0.2 6,117 - ABIE40_RS19550 0.27 -0.8 6,175 + ABIE40_RS19550 0.32 +0.4 6,175 + ABIE40_RS19550 0.32 +2.6 6,175 + ABIE40_RS19550 0.32 +1.1 6,176 - ABIE40_RS19550 0.32 +1.9 6,176 - ABIE40_RS19550 0.32 +0.3 6,356 + ABIE40_RS19550 0.47 +0.4 6,356 + ABIE40_RS19550 0.47 -3.0 6,475 + ABIE40_RS19550 0.57 +2.4 6,475 + ABIE40_RS19550 0.57 +0.5 6,475 + ABIE40_RS19550 0.57 +0.8 6,475 + ABIE40_RS19550 0.57 -0.6 6,476 - ABIE40_RS19550 0.57 -0.3 6,476 - ABIE40_RS19550 0.57 +1.0 6,523 + ABIE40_RS19550 0.61 +0.7 6,523 + ABIE40_RS19550 0.61 +0.6 6,523 + ABIE40_RS19550 0.61 +0.3 6,524 - ABIE40_RS19550 0.61 -0.1 6,524 - ABIE40_RS19550 0.61 -1.4 6,746 + ABIE40_RS19550 0.79 +0.5 6,746 + ABIE40_RS19550 0.79 +0.3 6,753 + ABIE40_RS19550 0.80 +1.1 6,754 - ABIE40_RS19550 0.80 -0.2 6,970 + -0.1 6,970 + +1.1 6,971 - +0.5 6,971 - -0.4 6,971 - +0.2 7,008 + +2.5 7,009 - +1.1 7,048 + -0.2 7,048 + +0.4 7,156 + ABIE40_RS19555 0.22 +0.2 7,156 + ABIE40_RS19555 0.22 -0.0 7,157 - ABIE40_RS19555 0.22 +0.6 7,157 - ABIE40_RS19555 0.22 +2.7 7,158 + ABIE40_RS19555 0.22 -1.4 7,158 + ABIE40_RS19555 0.22 -0.1 7,159 - ABIE40_RS19555 0.22 -0.2 7,159 - ABIE40_RS19555 0.22 +0.1 7,159 - ABIE40_RS19555 0.22 -1.6 7,360 - ABIE40_RS19555 0.51 +0.9 7,696 + +0.8 7,696 + +0.5 7,696 + +0.2 7,696 + +0.9 7,696 + +0.0 7,696 + +0.6 7,696 + +1.3 7,696 + +0.8 7,696 + -0.5 7,696 + +0.1 7,696 + -0.6 7,696 + -1.9 7,696 + -2.0 7,697 - +0.6 7,697 - -0.2 7,697 - +0.6 7,697 - -2.4 7,697 - +0.3 7,697 - -0.6 7,697 - +0.4 7,697 - +0.3 7,697 - -0.4 7,700 + +0.9 7,701 - -0.5 7,701 - -0.1 7,786 + ABIE40_RS19560 0.13 -0.2 7,786 + ABIE40_RS19560 0.13 +0.9 7,786 + ABIE40_RS19560 0.13 +1.3 7,787 - ABIE40_RS19560 0.13 +0.0 7,890 + ABIE40_RS19560 0.28 +1.3 7,891 - ABIE40_RS19560 0.28 -0.7 7,891 - ABIE40_RS19560 0.28 -1.5 7,895 + ABIE40_RS19560 0.29 -0.9 7,896 - ABIE40_RS19560 0.29 -1.3 7,896 - ABIE40_RS19560 0.29 +1.2 7,973 + ABIE40_RS19560 0.40 +0.1 7,973 + ABIE40_RS19560 0.40 +0.7 7,973 + ABIE40_RS19560 0.40 +1.9 7,973 + ABIE40_RS19560 0.40 -0.8 7,973 + ABIE40_RS19560 0.40 -1.5 7,973 + ABIE40_RS19560 0.40 -0.9 7,973 + ABIE40_RS19560 0.40 +0.5 7,974 - ABIE40_RS19560 0.40 +0.0 7,974 - ABIE40_RS19560 0.40 -2.1
Or see this region's nucleotide sequence