Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS17785

Experiment: Ethanol (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ethanol (C)
3,547,683	+				-0.9
3,547,683	+				-1.1
3,547,684	-				-1.3
3,547,684	-				-0.2
3,547,708	+				+1.1
3,547,709	-				-0.2
3,547,726	-				+1.3
3,547,823	+				-1.2
3,547,823	+				+0.3
3,547,823	+				-1.2
3,547,823	+				-0.5
3,547,824	-				+0.4
3,547,916	-				+0.7
3,547,916	-				-2.2
3,547,926	+				-0.5
3,547,926	+				-0.6
3,547,954	+		ABIE40_RS17780	0.19	+1.2
3,547,955	-		ABIE40_RS17780	0.19	-0.5
3,548,024	-		ABIE40_RS17780	0.45	-0.5
3,548,024	-		ABIE40_RS17780	0.45	-1.9
3,548,024	-		ABIE40_RS17780	0.45	+0.2
3,548,111	+		ABIE40_RS17780	0.78	-0.4
3,548,111	+		ABIE40_RS17780	0.78	+0.9
3,548,111	+		ABIE40_RS17780	0.78	+0.3
3,548,111	+		ABIE40_RS17780	0.78	-0.1
3,548,112	-		ABIE40_RS17780	0.78	+1.1
3,548,112	-		ABIE40_RS17780	0.78	+2.1
3,548,112	-		ABIE40_RS17780	0.78	-1.6
3,548,112	-		ABIE40_RS17780	0.78	+1.4
3,548,112	-		ABIE40_RS17780	0.78	+0.2
3,548,112	-		ABIE40_RS17780	0.78	-1.0
3,548,112	-		ABIE40_RS17780	0.78	-2.0
3,548,138	+		ABIE40_RS17780	0.88	+3.9
3,548,139	-		ABIE40_RS17780	0.88	-0.0
3,548,139	-		ABIE40_RS17780	0.88	-1.9
3,548,165	+				-1.2
3,548,166	-				-0.3
3,548,175	+				+0.1
3,548,176	-				-0.1
3,548,230	+				-0.3
3,548,231	-				-0.7
3,548,231	-				-0.2
3,548,251	+				-1.1
3,548,259	+				+0.1
3,548,324	+				+0.9
3,548,324	+				-3.5
3,548,324	+				-0.2
3,548,325	-				+0.4
3,548,325	-				+0.4
3,548,325	-				-0.9
3,548,451	+				-0.9
3,548,451	+				+0.5
3,548,452	-				+0.7
3,548,452	-				+0.4
3,548,478	-				-2.2
3,548,480	-				+3.1
3,548,530	-				-0.8
3,548,530	-				-2.4
3,548,530	-				-2.7
3,548,741	+		ABIE40_RS17785	0.21	+0.7
3,548,780	+		ABIE40_RS17785	0.23	+1.0
3,548,881	-		ABIE40_RS17785	0.28	-2.8
3,548,881	-		ABIE40_RS17785	0.28	+0.5
3,549,123	+		ABIE40_RS17785	0.41	-0.0
3,549,295	-		ABIE40_RS17785	0.50	+1.2
3,549,295	-		ABIE40_RS17785	0.50	+0.9
3,549,295	-		ABIE40_RS17785	0.50	+0.2
3,549,315	+		ABIE40_RS17785	0.51	-0.8
3,549,315	+		ABIE40_RS17785	0.51	-0.3
3,549,315	+		ABIE40_RS17785	0.51	+0.4
3,549,315	+		ABIE40_RS17785	0.51	-1.5
3,549,316	-		ABIE40_RS17785	0.51	-2.3
3,549,348	+		ABIE40_RS17785	0.52	-0.8
3,549,367	+		ABIE40_RS17785	0.53	-0.5
3,549,464	+		ABIE40_RS17785	0.58	-0.0
3,549,540	+		ABIE40_RS17785	0.62	-0.2
3,549,540	+		ABIE40_RS17785	0.62	+0.5
3,549,540	+		ABIE40_RS17785	0.62	+0.4
3,549,540	+		ABIE40_RS17785	0.62	+0.2
3,549,540	+		ABIE40_RS17785	0.62	-0.8
3,549,540	+		ABIE40_RS17785	0.62	-0.3
3,549,540	+		ABIE40_RS17785	0.62	+1.7
3,549,541	-		ABIE40_RS17785	0.62	-0.4
3,549,541	-		ABIE40_RS17785	0.62	-1.2
3,549,573	+		ABIE40_RS17785	0.64	+0.5
3,549,574	-		ABIE40_RS17785	0.64	-0.5
3,549,579	+		ABIE40_RS17785	0.64	+0.6
3,549,579	+		ABIE40_RS17785	0.64	+0.2
3,549,579	+		ABIE40_RS17785	0.64	+1.7
3,549,579	+		ABIE40_RS17785	0.64	-0.7
3,549,627	+		ABIE40_RS17785	0.67	-0.3
3,549,627	+		ABIE40_RS17785	0.67	+1.8
3,549,628	-		ABIE40_RS17785	0.67	+0.9
3,549,628	-		ABIE40_RS17785	0.67	+1.1
3,549,663	+		ABIE40_RS17785	0.69	-1.8
3,549,664	-		ABIE40_RS17785	0.69	-0.0
3,549,664	-		ABIE40_RS17785	0.69	+0.6
3,549,664	-		ABIE40_RS17785	0.69	+0.2
3,549,690	+		ABIE40_RS17785	0.70	+0.0
3,549,691	-		ABIE40_RS17785	0.70	-0.5
3,549,736	-		ABIE40_RS17785	0.73	-0.5
3,549,765	+		ABIE40_RS17785	0.74	+1.2
3,549,765	+		ABIE40_RS17785	0.74	-0.8
3,549,766	-		ABIE40_RS17785	0.74	-0.2
3,549,766	-		ABIE40_RS17785	0.74	-0.7
3,549,819	+		ABIE40_RS17785	0.77	-0.5
3,549,819	+		ABIE40_RS17785	0.77	-1.6
3,549,820	-		ABIE40_RS17785	0.77	+0.1
3,549,954	+		ABIE40_RS17785	0.84	+1.2
3,549,955	-		ABIE40_RS17785	0.84	+1.4
3,549,979	-		ABIE40_RS17785	0.85	+0.4
3,550,014	+		ABIE40_RS17785	0.87	+0.4
3,550,015	-		ABIE40_RS17785	0.87	-0.6
3,550,015	-		ABIE40_RS17785	0.87	+1.3
3,550,030	+		ABIE40_RS17785	0.88	+1.0
3,550,030	+		ABIE40_RS17785	0.88	-0.3
3,550,031	-		ABIE40_RS17785	0.88	+0.3
3,550,055	+		ABIE40_RS17785	0.89	-2.0
3,550,055	+		ABIE40_RS17785	0.89	-1.5
3,550,055	+		ABIE40_RS17785	0.89	+0.4
3,550,055	+		ABIE40_RS17785	0.89	+1.3
3,550,056	-		ABIE40_RS17785	0.89	-0.2
3,550,056	-		ABIE40_RS17785	0.89	+0.2
3,550,155	+				-0.1
3,550,209	+				-0.8
3,550,227	+				+0.1
3,550,227	+				+1.0
3,550,228	-				-0.2
3,550,228	-				-2.0
3,550,228	-				-0.0
3,550,228	-				-0.7
3,550,236	+				-0.1
3,550,236	+				-1.7
3,550,236	+				-2.7
3,550,236	+				-1.1
3,550,236	+				+0.2
3,550,237	-				-1.6
3,550,237	-				-1.5
3,550,237	-				-0.4
3,550,237	-				+1.5
3,550,237	-				-0.5
3,550,237	-				-0.1
3,550,246	+				+0.6
3,550,246	+				-0.1
3,550,246	+				+0.0
3,550,246	+				-0.3
3,550,246	+				-1.6
3,550,247	-				-0.2
3,550,260	+				+0.5
3,550,359	+				+1.0
3,550,359	+				+1.5
3,550,359	+				-1.0
3,550,359	-				-1.7
3,550,360	-				+0.1
3,550,681	+				-0.6
3,550,681	+				+0.4
3,551,179	+		ABIE40_RS17790	0.14	+3.5
3,551,179	+		ABIE40_RS17790	0.14	+0.9
3,551,179	+		ABIE40_RS17790	0.14	+1.3
3,551,179	+		ABIE40_RS17790	0.14	+1.0
3,551,179	+		ABIE40_RS17790	0.14	-2.8
3,551,180	-		ABIE40_RS17790	0.14	-0.6
3,551,180	-		ABIE40_RS17790	0.14	-0.5
3,551,230	+		ABIE40_RS17790	0.15	-1.1
3,551,230	+		ABIE40_RS17790	0.15	+1.2