Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS03035

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS03030 and ABIE40_RS03035 are separated by 245 nucleotidesABIE40_RS03035 and ABIE40_RS03040 are separated by 300 nucleotides ABIE40_RS03030: ABIE40_RS03030 - flagellin, at 597,014 to 597,913 _RS03030 ABIE40_RS03035: ABIE40_RS03035 - flagellin, at 598,159 to 599,064 _RS03035 ABIE40_RS03040: ABIE40_RS03040 - flagellin, at 599,365 to 600,312 _RS03040 Position (kb) 598 599 600Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 597.491 kb on - strand, within ABIE40_RS03030at 597.491 kb on - strand, within ABIE40_RS03030at 597.500 kb on + strand, within ABIE40_RS03030at 597.527 kb on + strand, within ABIE40_RS03030at 597.527 kb on + strand, within ABIE40_RS03030at 597.527 kb on + strand, within ABIE40_RS03030at 597.528 kb on - strand, within ABIE40_RS03030at 597.528 kb on - strand, within ABIE40_RS03030at 597.528 kb on - strand, within ABIE40_RS03030at 597.547 kb on + strand, within ABIE40_RS03030at 597.547 kb on + strand, within ABIE40_RS03030at 597.547 kb on + strand, within ABIE40_RS03030at 597.557 kb on - strand, within ABIE40_RS03030at 597.914 kb on + strandat 597.914 kb on + strandat 597.914 kb on + strandat 597.914 kb on + strandat 597.914 kb on + strandat 597.914 kb on + strandat 597.914 kb on + strandat 597.914 kb on + strandat 597.915 kb on - strandat 597.915 kb on - strandat 597.915 kb on - strandat 597.915 kb on - strandat 597.915 kb on - strandat 597.930 kb on - strandat 597.942 kb on - strandat 598.056 kb on - strandat 598.142 kb on + strandat 598.143 kb on - strandat 598.212 kb on + strandat 598.212 kb on + strandat 598.219 kb on - strandat 598.219 kb on - strandat 598.221 kb on + strandat 598.222 kb on - strandat 598.224 kb on + strandat 598.224 kb on + strandat 598.225 kb on - strandat 598.261 kb on + strand, within ABIE40_RS03035at 598.284 kb on + strand, within ABIE40_RS03035at 598.294 kb on + strand, within ABIE40_RS03035at 598.294 kb on + strand, within ABIE40_RS03035at 598.295 kb on - strand, within ABIE40_RS03035at 598.295 kb on - strand, within ABIE40_RS03035at 598.379 kb on + strand, within ABIE40_RS03035at 598.380 kb on - strand, within ABIE40_RS03035at 598.639 kb on + strand, within ABIE40_RS03035at 598.639 kb on + strand, within ABIE40_RS03035at 598.639 kb on + strand, within ABIE40_RS03035at 598.639 kb on + strand, within ABIE40_RS03035at 598.639 kb on + strand, within ABIE40_RS03035at 598.639 kb on + strand, within ABIE40_RS03035at 598.639 kb on + strand, within ABIE40_RS03035at 598.639 kb on + strand, within ABIE40_RS03035at 598.639 kb on + strand, within ABIE40_RS03035at 598.639 kb on + strand, within ABIE40_RS03035at 598.640 kb on - strand, within ABIE40_RS03035at 598.640 kb on - strand, within ABIE40_RS03035at 598.640 kb on - strand, within ABIE40_RS03035at 598.640 kb on - strand, within ABIE40_RS03035at 599.039 kb on - strandat 599.062 kb on + strandat 599.229 kb on + strandat 599.229 kb on + strandat 599.229 kb on + strandat 599.230 kb on - strandat 599.230 kb on - strandat 599.230 kb on - strandat 599.230 kb on - strandat 599.230 kb on - strandat 599.307 kb on + strandat 599.308 kb on - strandat 599.308 kb on - strandat 599.308 kb on - strandat 599.349 kb on + strandat 599.349 kb on + strandat 599.349 kb on + strandat 599.349 kb on + strandat 599.349 kb on + strandat 599.349 kb on + strandat 599.349 kb on + strandat 599.349 kb on + strandat 599.350 kb on - strandat 599.350 kb on - strandat 599.350 kb on - strandat 599.372 kb on - strandat 599.372 kb on - strandat 599.372 kb on - strandat 599.413 kb on - strandat 599.433 kb on + strandat 599.500 kb on + strand, within ABIE40_RS03040at 599.500 kb on + strand, within ABIE40_RS03040at 599.501 kb on - strand, within ABIE40_RS03040at 599.501 kb on - strand, within ABIE40_RS03040at 599.509 kb on + strand, within ABIE40_RS03040at 599.509 kb on + strand, within ABIE40_RS03040at 599.510 kb on - strand, within ABIE40_RS03040at 599.510 kb on - strand, within ABIE40_RS03040at 599.589 kb on + strand, within ABIE40_RS03040at 599.596 kb on + strand, within ABIE40_RS03040at 599.596 kb on + strand, within ABIE40_RS03040at 599.596 kb on + strand, within ABIE40_RS03040at 599.596 kb on + strand, within ABIE40_RS03040at 599.596 kb on + strand, within ABIE40_RS03040at 599.597 kb on - strand, within ABIE40_RS03040at 599.597 kb on - strand, within ABIE40_RS03040at 599.597 kb on - strand, within ABIE40_RS03040at 599.597 kb on - strand, within ABIE40_RS03040at 599.767 kb on + strand, within ABIE40_RS03040at 599.767 kb on + strand, within ABIE40_RS03040at 599.816 kb on - strand, within ABIE40_RS03040at 599.817 kb on + strand, within ABIE40_RS03040at 599.817 kb on + strand, within ABIE40_RS03040at 599.818 kb on - strand, within ABIE40_RS03040at 599.818 kb on - strand, within ABIE40_RS03040at 599.843 kb on - strand, within ABIE40_RS03040at 599.959 kb on + strand, within ABIE40_RS03040at 599.959 kb on + strand, within ABIE40_RS03040at 599.960 kb on - strand, within ABIE40_RS03040

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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597,491 - ABIE40_RS03030 0.53 +0.6
597,491 - ABIE40_RS03030 0.53 +0.9
597,500 + ABIE40_RS03030 0.54 +0.8
597,527 + ABIE40_RS03030 0.57 +1.0
597,527 + ABIE40_RS03030 0.57 +0.4
597,527 + ABIE40_RS03030 0.57 -0.1
597,528 - ABIE40_RS03030 0.57 +0.2
597,528 - ABIE40_RS03030 0.57 -0.1
597,528 - ABIE40_RS03030 0.57 -0.8
597,547 + ABIE40_RS03030 0.59 -1.4
597,547 + ABIE40_RS03030 0.59 -0.4
597,547 + ABIE40_RS03030 0.59 +0.3
597,557 - ABIE40_RS03030 0.60 -0.4
597,914 + -0.2
597,914 + +1.6
597,914 + +0.3
597,914 + -0.4
597,914 + -0.8
597,914 + -0.1
597,914 + -1.0
597,914 + -1.0
597,915 - +0.7
597,915 - -1.1
597,915 - +1.1
597,915 - +1.3
597,915 - +0.1
597,930 - +1.6
597,942 - +1.1
598,056 - +0.1
598,142 + +0.0
598,143 - +0.0
598,212 + -2.1
598,212 + -2.1
598,219 - -1.0
598,219 - +2.4
598,221 + +0.3
598,222 - -0.1
598,224 + -1.9
598,224 + -0.7
598,225 - +0.6
598,261 + ABIE40_RS03035 0.11 +0.3
598,284 + ABIE40_RS03035 0.14 -0.7
598,294 + ABIE40_RS03035 0.15 +0.0
598,294 + ABIE40_RS03035 0.15 +0.6
598,295 - ABIE40_RS03035 0.15 -0.2
598,295 - ABIE40_RS03035 0.15 +0.9
598,379 + ABIE40_RS03035 0.24 -2.5
598,380 - ABIE40_RS03035 0.24 -0.3
598,639 + ABIE40_RS03035 0.53 +1.1
598,639 + ABIE40_RS03035 0.53 +0.3
598,639 + ABIE40_RS03035 0.53 -0.5
598,639 + ABIE40_RS03035 0.53 -0.3
598,639 + ABIE40_RS03035 0.53 +0.1
598,639 + ABIE40_RS03035 0.53 -0.1
598,639 + ABIE40_RS03035 0.53 +0.5
598,639 + ABIE40_RS03035 0.53 -1.5
598,639 + ABIE40_RS03035 0.53 +0.0
598,639 + ABIE40_RS03035 0.53 -0.4
598,640 - ABIE40_RS03035 0.53 -0.6
598,640 - ABIE40_RS03035 0.53 -0.4
598,640 - ABIE40_RS03035 0.53 +0.8
598,640 - ABIE40_RS03035 0.53 +0.5
599,039 - -0.3
599,062 + -0.0
599,229 + -0.3
599,229 + -0.2
599,229 + +0.1
599,230 - -1.0
599,230 - -1.2
599,230 - -0.3
599,230 - -0.3
599,230 - -0.9
599,307 + +0.2
599,308 - -2.2
599,308 - -2.0
599,308 - +0.0
599,349 + -0.6
599,349 + -1.0
599,349 + -0.9
599,349 + -2.2
599,349 + -1.0
599,349 + -2.1
599,349 + -0.3
599,349 + -0.4
599,350 - -0.5
599,350 - -0.2
599,350 - -0.8
599,372 - -1.0
599,372 - -0.1
599,372 - -1.4
599,413 - +1.1
599,433 + -0.8
599,500 + ABIE40_RS03040 0.14 -0.7
599,500 + ABIE40_RS03040 0.14 -0.5
599,501 - ABIE40_RS03040 0.14 -1.1
599,501 - ABIE40_RS03040 0.14 -3.0
599,509 + ABIE40_RS03040 0.15 -1.3
599,509 + ABIE40_RS03040 0.15 -0.9
599,510 - ABIE40_RS03040 0.15 -0.4
599,510 - ABIE40_RS03040 0.15 -1.6
599,589 + ABIE40_RS03040 0.24 +1.2
599,596 + ABIE40_RS03040 0.24 -1.4
599,596 + ABIE40_RS03040 0.24 -3.6
599,596 + ABIE40_RS03040 0.24 +0.3
599,596 + ABIE40_RS03040 0.24 -2.2
599,596 + ABIE40_RS03040 0.24 -0.3
599,597 - ABIE40_RS03040 0.24 +0.2
599,597 - ABIE40_RS03040 0.24 +0.9
599,597 - ABIE40_RS03040 0.24 -0.3
599,597 - ABIE40_RS03040 0.24 +0.3
599,767 + ABIE40_RS03040 0.42 -0.2
599,767 + ABIE40_RS03040 0.42 -2.9
599,816 - ABIE40_RS03040 0.48 -0.2
599,817 + ABIE40_RS03040 0.48 +0.1
599,817 + ABIE40_RS03040 0.48 -0.9
599,818 - ABIE40_RS03040 0.48 -1.5
599,818 - ABIE40_RS03040 0.48 -0.2
599,843 - ABIE40_RS03040 0.50 +2.9
599,959 + ABIE40_RS03040 0.63 -1.5
599,959 + ABIE40_RS03040 0.63 +0.9
599,960 - ABIE40_RS03040 0.63 +0.4

Or see this region's nucleotide sequence