Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_900

Experiment: Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_899 and PfGW456L13_900 are separated by 248 nucleotidesPfGW456L13_900 and PfGW456L13_901 are separated by 205 nucleotides PfGW456L13_899 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-), at 1,005,373 to 1,006,596 _899 PfGW456L13_900 - Ferric iron ABC transporter, iron-binding protein, at 1,006,845 to 1,007,849 _900 PfGW456L13_901 - Ferric iron ABC transporter, permease protein, at 1,008,055 to 1,009,671 _901 Position (kb) 1006 1007 1008Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1006.574 kb on + strandat 1006.575 kb on - strandat 1006.613 kb on - strandat 1006.660 kb on - strandat 1006.735 kb on + strandat 1006.759 kb on + strandat 1006.760 kb on - strandat 1006.760 kb on - strandat 1006.760 kb on - strandat 1006.792 kb on + strandat 1006.807 kb on - strandat 1006.864 kb on + strandat 1006.932 kb on + strandat 1006.933 kb on - strandat 1006.933 kb on - strandat 1006.933 kb on - strandat 1006.933 kb on - strandat 1006.933 kb on - strandat 1006.977 kb on + strand, within PfGW456L13_900at 1006.977 kb on + strand, within PfGW456L13_900at 1006.977 kb on + strand, within PfGW456L13_900at 1006.977 kb on + strand, within PfGW456L13_900at 1006.978 kb on - strand, within PfGW456L13_900at 1006.978 kb on - strand, within PfGW456L13_900at 1006.978 kb on - strand, within PfGW456L13_900at 1006.978 kb on - strand, within PfGW456L13_900at 1006.978 kb on - strand, within PfGW456L13_900at 1006.978 kb on - strand, within PfGW456L13_900at 1007.064 kb on - strand, within PfGW456L13_900at 1007.064 kb on - strand, within PfGW456L13_900at 1007.165 kb on + strand, within PfGW456L13_900at 1007.235 kb on + strand, within PfGW456L13_900at 1007.236 kb on - strand, within PfGW456L13_900at 1007.236 kb on - strand, within PfGW456L13_900at 1007.274 kb on + strand, within PfGW456L13_900at 1007.274 kb on + strand, within PfGW456L13_900at 1007.274 kb on + strand, within PfGW456L13_900at 1007.274 kb on + strand, within PfGW456L13_900at 1007.274 kb on + strand, within PfGW456L13_900at 1007.274 kb on + strand, within PfGW456L13_900at 1007.274 kb on + strand, within PfGW456L13_900at 1007.274 kb on + strand, within PfGW456L13_900at 1007.275 kb on - strand, within PfGW456L13_900at 1007.275 kb on - strand, within PfGW456L13_900at 1007.275 kb on - strand, within PfGW456L13_900at 1007.275 kb on - strand, within PfGW456L13_900at 1007.275 kb on - strand, within PfGW456L13_900at 1007.275 kb on - strand, within PfGW456L13_900at 1007.275 kb on - strand, within PfGW456L13_900at 1007.275 kb on - strand, within PfGW456L13_900at 1007.337 kb on + strand, within PfGW456L13_900at 1007.337 kb on + strand, within PfGW456L13_900at 1007.338 kb on - strand, within PfGW456L13_900at 1007.371 kb on + strand, within PfGW456L13_900at 1007.372 kb on - strand, within PfGW456L13_900at 1007.505 kb on + strand, within PfGW456L13_900at 1007.505 kb on + strand, within PfGW456L13_900at 1007.505 kb on + strand, within PfGW456L13_900at 1007.505 kb on + strand, within PfGW456L13_900at 1007.505 kb on + strand, within PfGW456L13_900at 1007.505 kb on + strand, within PfGW456L13_900at 1007.505 kb on + strand, within PfGW456L13_900at 1007.506 kb on - strand, within PfGW456L13_900at 1007.506 kb on - strand, within PfGW456L13_900at 1007.506 kb on - strand, within PfGW456L13_900at 1007.506 kb on - strand, within PfGW456L13_900at 1007.506 kb on - strand, within PfGW456L13_900at 1007.506 kb on - strand, within PfGW456L13_900at 1007.508 kb on + strand, within PfGW456L13_900at 1007.508 kb on + strand, within PfGW456L13_900at 1007.508 kb on + strand, within PfGW456L13_900at 1007.508 kb on + strand, within PfGW456L13_900at 1007.508 kb on + strand, within PfGW456L13_900at 1007.509 kb on - strand, within PfGW456L13_900at 1007.509 kb on - strand, within PfGW456L13_900at 1007.509 kb on - strand, within PfGW456L13_900at 1007.509 kb on - strand, within PfGW456L13_900at 1007.509 kb on - strand, within PfGW456L13_900at 1007.509 kb on - strand, within PfGW456L13_900at 1007.512 kb on - strand, within PfGW456L13_900at 1007.584 kb on + strand, within PfGW456L13_900at 1007.584 kb on + strand, within PfGW456L13_900at 1007.584 kb on + strand, within PfGW456L13_900at 1007.584 kb on + strand, within PfGW456L13_900at 1007.585 kb on - strand, within PfGW456L13_900at 1007.585 kb on - strand, within PfGW456L13_900at 1007.585 kb on - strand, within PfGW456L13_900at 1007.774 kb on + strandat 1007.774 kb on + strandat 1007.775 kb on - strandat 1007.775 kb on - strandat 1007.917 kb on + strandat 1007.978 kb on - strandat 1007.978 kb on - strandat 1008.033 kb on + strandat 1008.033 kb on + strandat 1008.033 kb on + strandat 1008.033 kb on + strandat 1008.033 kb on + strandat 1008.033 kb on + strandat 1008.034 kb on - strandat 1008.034 kb on - strandat 1008.034 kb on - strandat 1008.034 kb on - strandat 1008.034 kb on - strandat 1008.034 kb on - strandat 1008.037 kb on + strandat 1008.037 kb on + strandat 1008.037 kb on + strandat 1008.037 kb on + strandat 1008.038 kb on - strandat 1008.038 kb on - strandat 1008.038 kb on - strandat 1008.038 kb on - strandat 1008.038 kb on - strandat 1008.040 kb on + strandat 1008.040 kb on + strandat 1008.040 kb on + strandat 1008.040 kb on + strandat 1008.040 kb on + strandat 1008.040 kb on + strandat 1008.040 kb on + strandat 1008.040 kb on + strandat 1008.040 kb on + strandat 1008.041 kb on - strandat 1008.153 kb on + strandat 1008.154 kb on - strandat 1008.154 kb on - strandat 1008.230 kb on + strand, within PfGW456L13_901at 1008.353 kb on - strand, within PfGW456L13_901at 1008.496 kb on + strand, within PfGW456L13_901at 1008.502 kb on + strand, within PfGW456L13_901at 1008.502 kb on + strand, within PfGW456L13_901at 1008.508 kb on + strand, within PfGW456L13_901at 1008.508 kb on + strand, within PfGW456L13_901at 1008.509 kb on - strand, within PfGW456L13_901at 1008.509 kb on - strand, within PfGW456L13_901at 1008.706 kb on - strand, within PfGW456L13_901at 1008.724 kb on + strand, within PfGW456L13_901at 1008.724 kb on + strand, within PfGW456L13_901at 1008.724 kb on + strand, within PfGW456L13_901at 1008.725 kb on - strand, within PfGW456L13_901at 1008.725 kb on - strand, within PfGW456L13_901at 1008.725 kb on - strand, within PfGW456L13_901at 1008.725 kb on - strand, within PfGW456L13_901at 1008.725 kb on - strand, within PfGW456L13_901at 1008.725 kb on - strand, within PfGW456L13_901at 1008.725 kb on - strand, within PfGW456L13_901at 1008.725 kb on - strand, within PfGW456L13_901at 1008.725 kb on - strand, within PfGW456L13_901at 1008.725 kb on - strand, within PfGW456L13_901at 1008.737 kb on - strand, within PfGW456L13_901at 1008.808 kb on + strand, within PfGW456L13_901at 1008.846 kb on + strand, within PfGW456L13_901at 1008.846 kb on + strand, within PfGW456L13_901at 1008.846 kb on + strand, within PfGW456L13_901

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
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1,006,574 + +0.0
1,006,575 - -0.8
1,006,613 - -0.8
1,006,660 - +0.8
1,006,735 + +0.4
1,006,759 + +0.4
1,006,760 - -0.7
1,006,760 - -2.5
1,006,760 - +0.4
1,006,792 + -0.1
1,006,807 - -0.4
1,006,864 + +0.1
1,006,932 + -2.8
1,006,933 - -1.1
1,006,933 - -0.3
1,006,933 - -1.3
1,006,933 - +1.8
1,006,933 - -0.1
1,006,977 + PfGW456L13_900 0.13 -0.8
1,006,977 + PfGW456L13_900 0.13 -1.4
1,006,977 + PfGW456L13_900 0.13 -1.2
1,006,977 + PfGW456L13_900 0.13 +0.2
1,006,978 - PfGW456L13_900 0.13 -2.6
1,006,978 - PfGW456L13_900 0.13 -0.5
1,006,978 - PfGW456L13_900 0.13 -0.5
1,006,978 - PfGW456L13_900 0.13 -1.9
1,006,978 - PfGW456L13_900 0.13 -1.2
1,006,978 - PfGW456L13_900 0.13 -0.9
1,007,064 - PfGW456L13_900 0.22 -1.1
1,007,064 - PfGW456L13_900 0.22 -1.1
1,007,165 + PfGW456L13_900 0.32 -0.4
1,007,235 + PfGW456L13_900 0.39 -1.3
1,007,236 - PfGW456L13_900 0.39 -0.5
1,007,236 - PfGW456L13_900 0.39 +0.2
1,007,274 + PfGW456L13_900 0.43 -1.5
1,007,274 + PfGW456L13_900 0.43 -0.4
1,007,274 + PfGW456L13_900 0.43 -0.7
1,007,274 + PfGW456L13_900 0.43 -1.0
1,007,274 + PfGW456L13_900 0.43 -0.6
1,007,274 + PfGW456L13_900 0.43 -1.6
1,007,274 + PfGW456L13_900 0.43 -1.0
1,007,274 + PfGW456L13_900 0.43 -0.8
1,007,275 - PfGW456L13_900 0.43 -0.1
1,007,275 - PfGW456L13_900 0.43 -1.4
1,007,275 - PfGW456L13_900 0.43 -0.8
1,007,275 - PfGW456L13_900 0.43 -0.9
1,007,275 - PfGW456L13_900 0.43 -0.9
1,007,275 - PfGW456L13_900 0.43 -1.3
1,007,275 - PfGW456L13_900 0.43 -1.1
1,007,275 - PfGW456L13_900 0.43 -0.2
1,007,337 + PfGW456L13_900 0.49 -0.0
1,007,337 + PfGW456L13_900 0.49 -0.7
1,007,338 - PfGW456L13_900 0.49 -0.6
1,007,371 + PfGW456L13_900 0.52 -2.0
1,007,372 - PfGW456L13_900 0.52 -0.8
1,007,505 + PfGW456L13_900 0.66 +0.2
1,007,505 + PfGW456L13_900 0.66 -0.3
1,007,505 + PfGW456L13_900 0.66 -0.3
1,007,505 + PfGW456L13_900 0.66 -1.3
1,007,505 + PfGW456L13_900 0.66 -0.5
1,007,505 + PfGW456L13_900 0.66 +0.1
1,007,505 + PfGW456L13_900 0.66 -0.5
1,007,506 - PfGW456L13_900 0.66 -1.1
1,007,506 - PfGW456L13_900 0.66 +1.0
1,007,506 - PfGW456L13_900 0.66 +0.6
1,007,506 - PfGW456L13_900 0.66 -0.8
1,007,506 - PfGW456L13_900 0.66 -1.9
1,007,506 - PfGW456L13_900 0.66 -0.7
1,007,508 + PfGW456L13_900 0.66 -1.8
1,007,508 + PfGW456L13_900 0.66 -3.1
1,007,508 + PfGW456L13_900 0.66 -0.2
1,007,508 + PfGW456L13_900 0.66 -1.2
1,007,508 + PfGW456L13_900 0.66 -0.2
1,007,509 - PfGW456L13_900 0.66 -1.0
1,007,509 - PfGW456L13_900 0.66 -3.0
1,007,509 - PfGW456L13_900 0.66 -0.2
1,007,509 - PfGW456L13_900 0.66 -0.5
1,007,509 - PfGW456L13_900 0.66 -0.7
1,007,509 - PfGW456L13_900 0.66 -0.7
1,007,512 - PfGW456L13_900 0.66 -0.4
1,007,584 + PfGW456L13_900 0.74 -0.5
1,007,584 + PfGW456L13_900 0.74 -1.0
1,007,584 + PfGW456L13_900 0.74 -1.6
1,007,584 + PfGW456L13_900 0.74 +1.1
1,007,585 - PfGW456L13_900 0.74 -0.3
1,007,585 - PfGW456L13_900 0.74 -0.8
1,007,585 - PfGW456L13_900 0.74 -0.8
1,007,774 + -0.1
1,007,774 + -0.6
1,007,775 - -1.1
1,007,775 - -0.0
1,007,917 + +0.8
1,007,978 - -0.1
1,007,978 - -0.2
1,008,033 + -0.2
1,008,033 + -0.6
1,008,033 + -0.7
1,008,033 + +0.2
1,008,033 + -0.4
1,008,033 + +0.6
1,008,034 - -1.0
1,008,034 - -1.3
1,008,034 - -0.5
1,008,034 - -0.4
1,008,034 - -0.2
1,008,034 - -1.8
1,008,037 + +0.2
1,008,037 + -0.1
1,008,037 + +0.0
1,008,037 + +0.1
1,008,038 - +0.2
1,008,038 - -1.6
1,008,038 - -0.1
1,008,038 - -0.1
1,008,038 - -0.5
1,008,040 + +1.1
1,008,040 + +0.7
1,008,040 + -0.6
1,008,040 + +0.1
1,008,040 + -0.5
1,008,040 + +1.7
1,008,040 + +0.3
1,008,040 + +0.5
1,008,040 + +0.4
1,008,041 - -0.4
1,008,153 + -1.4
1,008,154 - -1.7
1,008,154 - -0.6
1,008,230 + PfGW456L13_901 0.11 -1.5
1,008,353 - PfGW456L13_901 0.18 -1.1
1,008,496 + PfGW456L13_901 0.27 -0.1
1,008,502 + PfGW456L13_901 0.28 -0.9
1,008,502 + PfGW456L13_901 0.28 -0.6
1,008,508 + PfGW456L13_901 0.28 -0.3
1,008,508 + PfGW456L13_901 0.28 -0.8
1,008,509 - PfGW456L13_901 0.28 -1.6
1,008,509 - PfGW456L13_901 0.28 -0.5
1,008,706 - PfGW456L13_901 0.40 -1.2
1,008,724 + PfGW456L13_901 0.41 -1.0
1,008,724 + PfGW456L13_901 0.41 -2.0
1,008,724 + PfGW456L13_901 0.41 -0.0
1,008,725 - PfGW456L13_901 0.41 -2.0
1,008,725 - PfGW456L13_901 0.41 -1.2
1,008,725 - PfGW456L13_901 0.41 -1.6
1,008,725 - PfGW456L13_901 0.41 -0.1
1,008,725 - PfGW456L13_901 0.41 -1.1
1,008,725 - PfGW456L13_901 0.41 -1.3
1,008,725 - PfGW456L13_901 0.41 -2.3
1,008,725 - PfGW456L13_901 0.41 -1.1
1,008,725 - PfGW456L13_901 0.41 +0.4
1,008,725 - PfGW456L13_901 0.41 -1.1
1,008,737 - PfGW456L13_901 0.42 -0.7
1,008,808 + PfGW456L13_901 0.47 -0.5
1,008,846 + PfGW456L13_901 0.49 +0.1
1,008,846 + PfGW456L13_901 0.49 +0.2
1,008,846 + PfGW456L13_901 0.49 -0.8

Or see this region's nucleotide sequence