Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_62

Experiment: Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_60 and PfGW456L13_61 are separated by 187 nucleotidesPfGW456L13_61 and PfGW456L13_62 are separated by 78 nucleotidesPfGW456L13_62 and PfGW456L13_63 are separated by 148 nucleotides PfGW456L13_60 - membrane protein, MarC family, at 72,300 to 72,896 _60 PfGW456L13_61 - hypothetical protein, at 73,084 to 73,407 _61 PfGW456L13_62 - hypothetical protein, at 73,486 to 73,599 _62 PfGW456L13_63 - hypothetical protein, at 73,748 to 74,167 _63 Position (kb) 73 74Strain fitness (log2 ratio) -2 -1 0 1at 72.504 kb on - strand, within PfGW456L13_60at 72.743 kb on + strand, within PfGW456L13_60at 72.743 kb on + strand, within PfGW456L13_60at 72.744 kb on - strand, within PfGW456L13_60at 73.028 kb on - strandat 73.061 kb on + strandat 73.061 kb on + strandat 73.061 kb on + strandat 73.061 kb on + strandat 73.062 kb on - strandat 73.062 kb on - strandat 73.062 kb on - strandat 73.062 kb on - strandat 73.156 kb on + strand, within PfGW456L13_61at 73.157 kb on - strand, within PfGW456L13_61at 73.260 kb on - strand, within PfGW456L13_61at 73.260 kb on - strand, within PfGW456L13_61at 73.435 kb on + strandat 73.436 kb on - strandat 73.531 kb on + strand, within PfGW456L13_62at 73.598 kb on - strandat 73.655 kb on - strandat 73.693 kb on - strandat 73.804 kb on - strand, within PfGW456L13_63at 74.083 kb on + strand, within PfGW456L13_63at 74.084 kb on - strand, within PfGW456L13_63at 74.084 kb on - strand, within PfGW456L13_63at 74.084 kb on - strand, within PfGW456L13_63at 74.156 kb on - strandat 74.174 kb on - strandat 74.183 kb on + strandat 74.188 kb on + strandat 74.308 kb on - strandat 74.370 kb on - strandat 74.390 kb on + strandat 74.405 kb on + strandat 74.406 kb on - strandat 74.429 kb on - strandat 74.463 kb on - strandat 74.578 kb on + strandat 74.578 kb on + strandat 74.580 kb on + strandat 74.581 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
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72,504 - PfGW456L13_60 0.34 +0.9
72,743 + PfGW456L13_60 0.74 -0.6
72,743 + PfGW456L13_60 0.74 -1.0
72,744 - PfGW456L13_60 0.74 +0.1
73,028 - -0.3
73,061 + +0.2
73,061 + +0.4
73,061 + +0.6
73,061 + -0.1
73,062 - -0.9
73,062 - -0.1
73,062 - +0.4
73,062 - -2.0
73,156 + PfGW456L13_61 0.22 +0.3
73,157 - PfGW456L13_61 0.23 -0.2
73,260 - PfGW456L13_61 0.54 +1.1
73,260 - PfGW456L13_61 0.54 -0.1
73,435 + -1.7
73,436 - -1.1
73,531 + PfGW456L13_62 0.39 +1.0
73,598 - -0.6
73,655 - +0.6
73,693 - -0.1
73,804 - PfGW456L13_63 0.13 +0.4
74,083 + PfGW456L13_63 0.80 +0.2
74,084 - PfGW456L13_63 0.80 -1.6
74,084 - PfGW456L13_63 0.80 +0.6
74,084 - PfGW456L13_63 0.80 +0.4
74,156 - -0.4
74,174 - -0.9
74,183 + +0.9
74,188 + +1.0
74,308 - -0.2
74,370 - -0.1
74,390 + +1.2
74,405 + -0.7
74,406 - +1.2
74,429 - +0.1
74,463 - -0.1
74,578 + -1.1
74,578 + +0.2
74,580 + +0.2
74,581 - -0.2

Or see this region's nucleotide sequence