Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_5039

Experiment: Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_5038 and PfGW456L13_5039 overlap by 4 nucleotidesPfGW456L13_5039 and PfGW456L13_5040 are separated by 213 nucleotides PfGW456L13_5038 - K+-dependent Na+/Ca+ exchanger related-protein, at 5,613,947 to 5,615,008 _5038 PfGW456L13_5039 - 4-carboxymuconolactone decarboxylase (EC 4.1.1.44), at 5,615,005 to 5,615,385 _5039 PfGW456L13_5040 - PhoP/Q-regulated protein PqaA, at 5,615,599 to 5,617,080 _5040 Position (kb) 5615 5616Strain fitness (log2 ratio) -2 -1 0 1 2at 5614.014 kb on + strandat 5614.015 kb on - strandat 5614.038 kb on + strandat 5614.038 kb on + strandat 5614.039 kb on - strandat 5614.039 kb on - strandat 5614.039 kb on - strandat 5614.285 kb on - strand, within PfGW456L13_5038at 5614.350 kb on - strand, within PfGW456L13_5038at 5614.362 kb on + strand, within PfGW456L13_5038at 5614.475 kb on + strand, within PfGW456L13_5038at 5614.475 kb on + strand, within PfGW456L13_5038at 5614.571 kb on - strand, within PfGW456L13_5038at 5614.571 kb on - strand, within PfGW456L13_5038at 5614.611 kb on + strand, within PfGW456L13_5038at 5614.698 kb on + strand, within PfGW456L13_5038at 5614.790 kb on + strand, within PfGW456L13_5038at 5614.791 kb on - strand, within PfGW456L13_5038at 5614.791 kb on - strand, within PfGW456L13_5038at 5614.791 kb on - strand, within PfGW456L13_5038at 5614.791 kb on - strand, within PfGW456L13_5038at 5614.841 kb on + strand, within PfGW456L13_5038at 5614.842 kb on - strand, within PfGW456L13_5038at 5614.842 kb on - strand, within PfGW456L13_5038at 5614.842 kb on - strand, within PfGW456L13_5038at 5614.851 kb on - strand, within PfGW456L13_5038at 5614.851 kb on - strand, within PfGW456L13_5038at 5614.851 kb on - strand, within PfGW456L13_5038at 5614.921 kb on - strandat 5614.990 kb on + strandat 5614.990 kb on + strandat 5614.991 kb on - strandat 5614.991 kb on - strandat 5614.991 kb on - strandat 5614.991 kb on - strandat 5614.991 kb on - strandat 5614.991 kb on - strandat 5615.308 kb on + strand, within PfGW456L13_5039at 5615.308 kb on + strand, within PfGW456L13_5039at 5615.308 kb on + strand, within PfGW456L13_5039at 5615.309 kb on - strand, within PfGW456L13_5039at 5615.309 kb on - strand, within PfGW456L13_5039at 5615.309 kb on - strand, within PfGW456L13_5039at 5615.369 kb on - strandat 5615.448 kb on + strandat 5615.448 kb on + strandat 5615.448 kb on + strandat 5615.448 kb on + strandat 5615.449 kb on - strandat 5615.449 kb on - strandat 5615.449 kb on - strandat 5615.449 kb on - strandat 5615.459 kb on + strandat 5615.459 kb on + strandat 5615.459 kb on + strandat 5615.459 kb on + strandat 5615.460 kb on - strandat 5615.583 kb on + strandat 5615.583 kb on + strandat 5615.583 kb on + strandat 5615.583 kb on + strandat 5615.584 kb on - strandat 5615.584 kb on - strandat 5615.584 kb on - strandat 5615.621 kb on + strandat 5615.622 kb on - strandat 5615.622 kb on - strandat 5615.666 kb on + strandat 5615.666 kb on + strandat 5615.666 kb on + strandat 5615.667 kb on - strandat 5615.667 kb on - strandat 5615.667 kb on - strandat 5615.667 kb on - strandat 5615.667 kb on - strandat 5615.732 kb on - strandat 5615.732 kb on - strandat 5615.732 kb on - strandat 5615.732 kb on - strandat 5615.764 kb on + strand, within PfGW456L13_5040at 5615.765 kb on - strand, within PfGW456L13_5040at 5615.765 kb on - strand, within PfGW456L13_5040at 5615.887 kb on + strand, within PfGW456L13_5040at 5615.887 kb on + strand, within PfGW456L13_5040at 5615.887 kb on + strand, within PfGW456L13_5040at 5615.887 kb on + strand, within PfGW456L13_5040at 5615.887 kb on + strand, within PfGW456L13_5040at 5615.887 kb on + strand, within PfGW456L13_5040at 5615.887 kb on + strand, within PfGW456L13_5040at 5615.887 kb on + strand, within PfGW456L13_5040at 5615.887 kb on + strand, within PfGW456L13_5040at 5615.887 kb on + strand, within PfGW456L13_5040at 5615.888 kb on - strand, within PfGW456L13_5040at 5615.888 kb on - strand, within PfGW456L13_5040at 5615.888 kb on - strand, within PfGW456L13_5040at 5615.888 kb on - strand, within PfGW456L13_5040at 5615.888 kb on - strand, within PfGW456L13_5040at 5615.888 kb on - strand, within PfGW456L13_5040at 5615.888 kb on - strand, within PfGW456L13_5040at 5615.888 kb on - strand, within PfGW456L13_5040at 5615.888 kb on - strand, within PfGW456L13_5040at 5616.061 kb on + strand, within PfGW456L13_5040at 5616.062 kb on - strand, within PfGW456L13_5040at 5616.070 kb on + strand, within PfGW456L13_5040at 5616.070 kb on + strand, within PfGW456L13_5040at 5616.071 kb on - strand, within PfGW456L13_5040at 5616.157 kb on + strand, within PfGW456L13_5040at 5616.157 kb on + strand, within PfGW456L13_5040at 5616.157 kb on + strand, within PfGW456L13_5040at 5616.158 kb on - strand, within PfGW456L13_5040at 5616.158 kb on - strand, within PfGW456L13_5040at 5616.158 kb on - strand, within PfGW456L13_5040at 5616.158 kb on - strand, within PfGW456L13_5040at 5616.158 kb on - strand, within PfGW456L13_5040at 5616.158 kb on - strand, within PfGW456L13_5040at 5616.158 kb on - strand, within PfGW456L13_5040at 5616.158 kb on - strand, within PfGW456L13_5040at 5616.158 kb on - strand, within PfGW456L13_5040at 5616.240 kb on - strand, within PfGW456L13_5040at 5616.240 kb on - strand, within PfGW456L13_5040at 5616.240 kb on - strand, within PfGW456L13_5040at 5616.345 kb on - strand, within PfGW456L13_5040at 5616.345 kb on - strand, within PfGW456L13_5040at 5616.345 kb on - strand, within PfGW456L13_5040at 5616.372 kb on + strand, within PfGW456L13_5040at 5616.372 kb on + strand, within PfGW456L13_5040at 5616.373 kb on - strand, within PfGW456L13_5040at 5616.373 kb on - strand, within PfGW456L13_5040at 5616.373 kb on - strand, within PfGW456L13_5040at 5616.373 kb on - strand, within PfGW456L13_5040

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
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5,614,014 + +0.3
5,614,015 - -0.6
5,614,038 + -0.2
5,614,038 + -0.5
5,614,039 - +0.4
5,614,039 - -0.9
5,614,039 - +0.2
5,614,285 - PfGW456L13_5038 0.32 -0.8
5,614,350 - PfGW456L13_5038 0.38 -0.4
5,614,362 + PfGW456L13_5038 0.39 +0.6
5,614,475 + PfGW456L13_5038 0.50 +0.3
5,614,475 + PfGW456L13_5038 0.50 +0.1
5,614,571 - PfGW456L13_5038 0.59 -1.6
5,614,571 - PfGW456L13_5038 0.59 +1.8
5,614,611 + PfGW456L13_5038 0.63 -0.2
5,614,698 + PfGW456L13_5038 0.71 +0.4
5,614,790 + PfGW456L13_5038 0.79 -0.4
5,614,791 - PfGW456L13_5038 0.79 +0.5
5,614,791 - PfGW456L13_5038 0.79 +0.7
5,614,791 - PfGW456L13_5038 0.79 -0.8
5,614,791 - PfGW456L13_5038 0.79 +0.6
5,614,841 + PfGW456L13_5038 0.84 +0.3
5,614,842 - PfGW456L13_5038 0.84 +0.2
5,614,842 - PfGW456L13_5038 0.84 -0.5
5,614,842 - PfGW456L13_5038 0.84 -0.5
5,614,851 - PfGW456L13_5038 0.85 -1.4
5,614,851 - PfGW456L13_5038 0.85 +1.3
5,614,851 - PfGW456L13_5038 0.85 -0.4
5,614,921 - +0.2
5,614,990 + -0.8
5,614,990 + -0.2
5,614,991 - +0.5
5,614,991 - -0.5
5,614,991 - -0.1
5,614,991 - -0.7
5,614,991 - -0.5
5,614,991 - +0.4
5,615,308 + PfGW456L13_5039 0.80 +0.5
5,615,308 + PfGW456L13_5039 0.80 +0.8
5,615,308 + PfGW456L13_5039 0.80 +0.4
5,615,309 - PfGW456L13_5039 0.80 +0.2
5,615,309 - PfGW456L13_5039 0.80 +0.7
5,615,309 - PfGW456L13_5039 0.80 -0.1
5,615,369 - +0.1
5,615,448 + -0.7
5,615,448 + -0.6
5,615,448 + -0.1
5,615,448 + +0.5
5,615,449 - -0.0
5,615,449 - -0.4
5,615,449 - +0.1
5,615,449 - -0.3
5,615,459 + -0.5
5,615,459 + +0.0
5,615,459 + +0.0
5,615,459 + -0.2
5,615,460 - -0.8
5,615,583 + -0.1
5,615,583 + +0.1
5,615,583 + +0.5
5,615,583 + +0.9
5,615,584 - +0.3
5,615,584 - -0.3
5,615,584 - +0.0
5,615,621 + +1.3
5,615,622 - -0.5
5,615,622 - -1.0
5,615,666 + -0.0
5,615,666 + -0.4
5,615,666 + +0.4
5,615,667 - -0.0
5,615,667 - -0.1
5,615,667 - +0.6
5,615,667 - -1.2
5,615,667 - +0.3
5,615,732 - -2.5
5,615,732 - +0.8
5,615,732 - -0.3
5,615,732 - -0.0
5,615,764 + PfGW456L13_5040 0.11 +0.2
5,615,765 - PfGW456L13_5040 0.11 -0.8
5,615,765 - PfGW456L13_5040 0.11 +0.7
5,615,887 + PfGW456L13_5040 0.19 +0.6
5,615,887 + PfGW456L13_5040 0.19 +0.1
5,615,887 + PfGW456L13_5040 0.19 +0.9
5,615,887 + PfGW456L13_5040 0.19 +0.4
5,615,887 + PfGW456L13_5040 0.19 +1.8
5,615,887 + PfGW456L13_5040 0.19 +0.3
5,615,887 + PfGW456L13_5040 0.19 +0.4
5,615,887 + PfGW456L13_5040 0.19 +1.2
5,615,887 + PfGW456L13_5040 0.19 -0.4
5,615,887 + PfGW456L13_5040 0.19 -0.2
5,615,888 - PfGW456L13_5040 0.20 -1.2
5,615,888 - PfGW456L13_5040 0.20 -0.1
5,615,888 - PfGW456L13_5040 0.20 +0.1
5,615,888 - PfGW456L13_5040 0.20 +0.1
5,615,888 - PfGW456L13_5040 0.20 -1.0
5,615,888 - PfGW456L13_5040 0.20 +0.9
5,615,888 - PfGW456L13_5040 0.20 +0.5
5,615,888 - PfGW456L13_5040 0.20 +0.7
5,615,888 - PfGW456L13_5040 0.20 +0.4
5,616,061 + PfGW456L13_5040 0.31 -0.3
5,616,062 - PfGW456L13_5040 0.31 -0.7
5,616,070 + PfGW456L13_5040 0.32 +0.1
5,616,070 + PfGW456L13_5040 0.32 +0.6
5,616,071 - PfGW456L13_5040 0.32 -0.1
5,616,157 + PfGW456L13_5040 0.38 +0.5
5,616,157 + PfGW456L13_5040 0.38 +0.3
5,616,157 + PfGW456L13_5040 0.38 -0.1
5,616,158 - PfGW456L13_5040 0.38 -0.3
5,616,158 - PfGW456L13_5040 0.38 +0.6
5,616,158 - PfGW456L13_5040 0.38 +0.1
5,616,158 - PfGW456L13_5040 0.38 +0.4
5,616,158 - PfGW456L13_5040 0.38 +0.8
5,616,158 - PfGW456L13_5040 0.38 -0.6
5,616,158 - PfGW456L13_5040 0.38 +0.3
5,616,158 - PfGW456L13_5040 0.38 -0.4
5,616,158 - PfGW456L13_5040 0.38 -0.5
5,616,240 - PfGW456L13_5040 0.43 -0.1
5,616,240 - PfGW456L13_5040 0.43 +0.0
5,616,240 - PfGW456L13_5040 0.43 -0.4
5,616,345 - PfGW456L13_5040 0.50 -0.2
5,616,345 - PfGW456L13_5040 0.50 +0.6
5,616,345 - PfGW456L13_5040 0.50 +0.4
5,616,372 + PfGW456L13_5040 0.52 +0.4
5,616,372 + PfGW456L13_5040 0.52 +0.4
5,616,373 - PfGW456L13_5040 0.52 +0.1
5,616,373 - PfGW456L13_5040 0.52 -0.2
5,616,373 - PfGW456L13_5040 0.52 +0.6
5,616,373 - PfGW456L13_5040 0.52 -0.4

Or see this region's nucleotide sequence