Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4957

Experiment: Zinc 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_4955 and PfGW456L13_4956 overlap by 4 nucleotidesPfGW456L13_4956 and PfGW456L13_4957 are separated by 276 nucleotidesPfGW456L13_4957 and PfGW456L13_4958 are separated by 77 nucleotides PfGW456L13_4955 - FIG00954638: hypothetical protein, at 5,534,704 to 5,535,018 _4955 PfGW456L13_4956 - FIG00954263: hypothetical protein, at 5,535,015 to 5,535,515 _4956 PfGW456L13_4957 - FIG00957554: hypothetical protein, at 5,535,792 to 5,536,142 _4957 PfGW456L13_4958 - Leucine dehydrogenase (EC 1.4.1.9), at 5,536,220 to 5,537,239 _4958 Position (kb) 5535 5536 5537Strain fitness (log2 ratio) -2 -1 0 1 2at 5535.017 kb on - strandat 5535.059 kb on + strandat 5535.059 kb on + strandat 5535.059 kb on + strandat 5535.060 kb on - strandat 5535.060 kb on - strandat 5535.060 kb on - strandat 5535.060 kb on - strandat 5535.060 kb on - strandat 5535.116 kb on - strand, within PfGW456L13_4956at 5535.166 kb on + strand, within PfGW456L13_4956at 5535.166 kb on + strand, within PfGW456L13_4956at 5535.166 kb on + strand, within PfGW456L13_4956at 5535.166 kb on + strand, within PfGW456L13_4956at 5535.166 kb on + strand, within PfGW456L13_4956at 5535.166 kb on + strand, within PfGW456L13_4956at 5535.166 kb on + strand, within PfGW456L13_4956at 5535.167 kb on - strand, within PfGW456L13_4956at 5535.167 kb on - strand, within PfGW456L13_4956at 5535.167 kb on - strand, within PfGW456L13_4956at 5535.202 kb on - strand, within PfGW456L13_4956at 5535.202 kb on - strand, within PfGW456L13_4956at 5535.244 kb on + strand, within PfGW456L13_4956at 5535.244 kb on + strand, within PfGW456L13_4956at 5535.244 kb on + strand, within PfGW456L13_4956at 5535.244 kb on + strand, within PfGW456L13_4956at 5535.244 kb on + strand, within PfGW456L13_4956at 5535.245 kb on - strand, within PfGW456L13_4956at 5535.245 kb on - strand, within PfGW456L13_4956at 5535.245 kb on - strand, within PfGW456L13_4956at 5535.245 kb on - strand, within PfGW456L13_4956at 5535.283 kb on + strand, within PfGW456L13_4956at 5535.283 kb on + strand, within PfGW456L13_4956at 5535.313 kb on + strand, within PfGW456L13_4956at 5535.313 kb on + strand, within PfGW456L13_4956at 5535.314 kb on - strand, within PfGW456L13_4956at 5535.314 kb on - strand, within PfGW456L13_4956at 5535.314 kb on - strand, within PfGW456L13_4956at 5535.427 kb on + strand, within PfGW456L13_4956at 5535.428 kb on - strand, within PfGW456L13_4956at 5535.529 kb on + strandat 5535.529 kb on + strandat 5535.529 kb on + strandat 5535.530 kb on - strandat 5535.530 kb on - strandat 5535.530 kb on - strandat 5535.684 kb on + strandat 5535.684 kb on + strandat 5535.684 kb on + strandat 5535.684 kb on + strandat 5535.684 kb on + strandat 5535.684 kb on + strandat 5535.685 kb on - strandat 5535.690 kb on - strandat 5535.690 kb on - strandat 5535.690 kb on - strandat 5535.740 kb on + strandat 5535.744 kb on + strandat 5535.808 kb on + strandat 5535.808 kb on + strandat 5535.808 kb on + strandat 5535.808 kb on + strandat 5535.808 kb on + strandat 5535.809 kb on - strandat 5535.809 kb on - strandat 5535.809 kb on - strandat 5535.809 kb on - strandat 5535.809 kb on - strandat 5535.811 kb on - strandat 5535.848 kb on + strand, within PfGW456L13_4957at 5535.849 kb on - strand, within PfGW456L13_4957at 5535.963 kb on + strand, within PfGW456L13_4957at 5535.963 kb on + strand, within PfGW456L13_4957at 5535.963 kb on + strand, within PfGW456L13_4957at 5535.963 kb on + strand, within PfGW456L13_4957at 5535.964 kb on - strand, within PfGW456L13_4957at 5535.964 kb on - strand, within PfGW456L13_4957at 5535.964 kb on - strand, within PfGW456L13_4957at 5535.964 kb on - strand, within PfGW456L13_4957at 5535.964 kb on - strand, within PfGW456L13_4957at 5535.964 kb on - strand, within PfGW456L13_4957at 5535.964 kb on - strand, within PfGW456L13_4957at 5536.140 kb on + strandat 5536.141 kb on - strandat 5536.141 kb on - strandat 5536.141 kb on - strandat 5536.380 kb on + strand, within PfGW456L13_4958at 5536.380 kb on + strand, within PfGW456L13_4958at 5536.380 kb on + strand, within PfGW456L13_4958at 5536.380 kb on + strand, within PfGW456L13_4958at 5536.380 kb on + strand, within PfGW456L13_4958at 5536.381 kb on - strand, within PfGW456L13_4958at 5536.381 kb on - strand, within PfGW456L13_4958at 5536.381 kb on - strand, within PfGW456L13_4958at 5536.400 kb on + strand, within PfGW456L13_4958at 5536.401 kb on - strand, within PfGW456L13_4958at 5536.407 kb on + strand, within PfGW456L13_4958at 5536.407 kb on + strand, within PfGW456L13_4958at 5536.407 kb on + strand, within PfGW456L13_4958at 5536.408 kb on - strand, within PfGW456L13_4958at 5536.408 kb on - strand, within PfGW456L13_4958at 5536.408 kb on - strand, within PfGW456L13_4958at 5536.420 kb on - strand, within PfGW456L13_4958at 5536.420 kb on - strand, within PfGW456L13_4958at 5536.420 kb on - strand, within PfGW456L13_4958at 5536.796 kb on + strand, within PfGW456L13_4958at 5536.917 kb on + strand, within PfGW456L13_4958at 5536.917 kb on + strand, within PfGW456L13_4958at 5536.917 kb on + strand, within PfGW456L13_4958at 5536.918 kb on - strand, within PfGW456L13_4958at 5536.918 kb on - strand, within PfGW456L13_4958at 5536.939 kb on + strand, within PfGW456L13_4958at 5536.939 kb on + strand, within PfGW456L13_4958at 5536.940 kb on - strand, within PfGW456L13_4958at 5536.940 kb on - strand, within PfGW456L13_4958at 5536.940 kb on - strand, within PfGW456L13_4958at 5537.046 kb on + strand, within PfGW456L13_4958at 5537.046 kb on + strand, within PfGW456L13_4958at 5537.046 kb on + strand, within PfGW456L13_4958at 5537.126 kb on + strand, within PfGW456L13_4958at 5537.127 kb on - strand, within PfGW456L13_4958at 5537.127 kb on - strand, within PfGW456L13_4958at 5537.127 kb on - strand, within PfGW456L13_4958at 5537.127 kb on - strand, within PfGW456L13_4958at 5537.127 kb on - strand, within PfGW456L13_4958at 5537.127 kb on - strand, within PfGW456L13_4958

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
remove
5,535,017 - +0.3
5,535,059 + +0.0
5,535,059 + -1.4
5,535,059 + -1.8
5,535,060 - -0.5
5,535,060 - -1.2
5,535,060 - +0.3
5,535,060 - +1.2
5,535,060 - -0.3
5,535,116 - PfGW456L13_4956 0.20 -0.4
5,535,166 + PfGW456L13_4956 0.30 -0.5
5,535,166 + PfGW456L13_4956 0.30 +1.8
5,535,166 + PfGW456L13_4956 0.30 +0.0
5,535,166 + PfGW456L13_4956 0.30 -0.4
5,535,166 + PfGW456L13_4956 0.30 -0.1
5,535,166 + PfGW456L13_4956 0.30 +0.9
5,535,166 + PfGW456L13_4956 0.30 +0.1
5,535,167 - PfGW456L13_4956 0.30 -0.6
5,535,167 - PfGW456L13_4956 0.30 +1.2
5,535,167 - PfGW456L13_4956 0.30 +0.6
5,535,202 - PfGW456L13_4956 0.37 +0.4
5,535,202 - PfGW456L13_4956 0.37 -0.3
5,535,244 + PfGW456L13_4956 0.46 -0.2
5,535,244 + PfGW456L13_4956 0.46 +0.2
5,535,244 + PfGW456L13_4956 0.46 +0.5
5,535,244 + PfGW456L13_4956 0.46 -1.8
5,535,244 + PfGW456L13_4956 0.46 -2.3
5,535,245 - PfGW456L13_4956 0.46 +0.1
5,535,245 - PfGW456L13_4956 0.46 +0.3
5,535,245 - PfGW456L13_4956 0.46 +0.4
5,535,245 - PfGW456L13_4956 0.46 -0.3
5,535,283 + PfGW456L13_4956 0.53 -0.6
5,535,283 + PfGW456L13_4956 0.53 -0.1
5,535,313 + PfGW456L13_4956 0.59 +0.0
5,535,313 + PfGW456L13_4956 0.59 +0.4
5,535,314 - PfGW456L13_4956 0.60 +0.6
5,535,314 - PfGW456L13_4956 0.60 +0.4
5,535,314 - PfGW456L13_4956 0.60 +0.7
5,535,427 + PfGW456L13_4956 0.82 -0.2
5,535,428 - PfGW456L13_4956 0.82 +0.3
5,535,529 + -1.2
5,535,529 + -0.8
5,535,529 + +0.5
5,535,530 - +0.6
5,535,530 - +0.4
5,535,530 - +1.1
5,535,684 + +0.6
5,535,684 + +0.0
5,535,684 + -1.1
5,535,684 + -0.1
5,535,684 + +1.5
5,535,684 + +0.3
5,535,685 - -0.0
5,535,690 - -0.6
5,535,690 - -0.4
5,535,690 - +1.0
5,535,740 + -1.0
5,535,744 + +0.5
5,535,808 + +0.4
5,535,808 + -0.2
5,535,808 + +0.2
5,535,808 + +0.5
5,535,808 + -0.2
5,535,809 - -0.4
5,535,809 - +0.4
5,535,809 - -0.2
5,535,809 - -1.0
5,535,809 - -0.1
5,535,811 - +0.1
5,535,848 + PfGW456L13_4957 0.16 +0.5
5,535,849 - PfGW456L13_4957 0.16 +0.3
5,535,963 + PfGW456L13_4957 0.49 +0.3
5,535,963 + PfGW456L13_4957 0.49 -0.3
5,535,963 + PfGW456L13_4957 0.49 +0.1
5,535,963 + PfGW456L13_4957 0.49 +0.2
5,535,964 - PfGW456L13_4957 0.49 +0.7
5,535,964 - PfGW456L13_4957 0.49 +0.8
5,535,964 - PfGW456L13_4957 0.49 +0.3
5,535,964 - PfGW456L13_4957 0.49 +0.4
5,535,964 - PfGW456L13_4957 0.49 +0.7
5,535,964 - PfGW456L13_4957 0.49 +1.0
5,535,964 - PfGW456L13_4957 0.49 +0.3
5,536,140 + +0.5
5,536,141 - -1.0
5,536,141 - -0.1
5,536,141 - +0.4
5,536,380 + PfGW456L13_4958 0.16 +0.9
5,536,380 + PfGW456L13_4958 0.16 -0.1
5,536,380 + PfGW456L13_4958 0.16 -0.3
5,536,380 + PfGW456L13_4958 0.16 +0.1
5,536,380 + PfGW456L13_4958 0.16 +0.7
5,536,381 - PfGW456L13_4958 0.16 -0.1
5,536,381 - PfGW456L13_4958 0.16 +0.1
5,536,381 - PfGW456L13_4958 0.16 +0.5
5,536,400 + PfGW456L13_4958 0.18 -0.5
5,536,401 - PfGW456L13_4958 0.18 -0.1
5,536,407 + PfGW456L13_4958 0.18 -0.5
5,536,407 + PfGW456L13_4958 0.18 -0.8
5,536,407 + PfGW456L13_4958 0.18 +0.1
5,536,408 - PfGW456L13_4958 0.18 +0.8
5,536,408 - PfGW456L13_4958 0.18 -0.7
5,536,408 - PfGW456L13_4958 0.18 -1.3
5,536,420 - PfGW456L13_4958 0.20 +0.2
5,536,420 - PfGW456L13_4958 0.20 +0.0
5,536,420 - PfGW456L13_4958 0.20 +0.6
5,536,796 + PfGW456L13_4958 0.56 +0.3
5,536,917 + PfGW456L13_4958 0.68 +0.9
5,536,917 + PfGW456L13_4958 0.68 -0.5
5,536,917 + PfGW456L13_4958 0.68 -0.3
5,536,918 - PfGW456L13_4958 0.68 +0.6
5,536,918 - PfGW456L13_4958 0.68 -0.1
5,536,939 + PfGW456L13_4958 0.70 +1.4
5,536,939 + PfGW456L13_4958 0.70 +0.5
5,536,940 - PfGW456L13_4958 0.71 +0.2
5,536,940 - PfGW456L13_4958 0.71 -0.5
5,536,940 - PfGW456L13_4958 0.71 +0.3
5,537,046 + PfGW456L13_4958 0.81 +0.4
5,537,046 + PfGW456L13_4958 0.81 +1.4
5,537,046 + PfGW456L13_4958 0.81 -0.1
5,537,126 + PfGW456L13_4958 0.89 -0.5
5,537,127 - PfGW456L13_4958 0.89 +0.3
5,537,127 - PfGW456L13_4958 0.89 -0.1
5,537,127 - PfGW456L13_4958 0.89 -0.1
5,537,127 - PfGW456L13_4958 0.89 +0.5
5,537,127 - PfGW456L13_4958 0.89 +0.1
5,537,127 - PfGW456L13_4958 0.89 +0.1

Or see this region's nucleotide sequence