Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4955

Experiment: Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4954 and PfGW456L13_4955 are separated by 309 nucleotidesPfGW456L13_4955 and PfGW456L13_4956 overlap by 4 nucleotidesPfGW456L13_4956 and PfGW456L13_4957 are separated by 276 nucleotides PfGW456L13_4954 - L-serine ammonia-lyase (EC 4.3.1.17) (from data), at 5,533,018 to 5,534,394 _4954 PfGW456L13_4955 - FIG00954638: hypothetical protein, at 5,534,704 to 5,535,018 _4955 PfGW456L13_4956 - FIG00954263: hypothetical protein, at 5,535,015 to 5,535,515 _4956 PfGW456L13_4957 - FIG00957554: hypothetical protein, at 5,535,792 to 5,536,142 _4957 Position (kb) 5534 5535 5536Strain fitness (log2 ratio) -2 -1 0 1 2at 5533.791 kb on + strand, within PfGW456L13_4954at 5533.791 kb on + strand, within PfGW456L13_4954at 5533.791 kb on + strand, within PfGW456L13_4954at 5533.791 kb on + strand, within PfGW456L13_4954at 5533.791 kb on + strand, within PfGW456L13_4954at 5533.792 kb on - strand, within PfGW456L13_4954at 5533.792 kb on - strand, within PfGW456L13_4954at 5533.792 kb on - strand, within PfGW456L13_4954at 5533.792 kb on - strand, within PfGW456L13_4954at 5533.792 kb on - strand, within PfGW456L13_4954at 5533.792 kb on - strand, within PfGW456L13_4954at 5533.792 kb on - strand, within PfGW456L13_4954at 5533.792 kb on - strand, within PfGW456L13_4954at 5533.792 kb on - strand, within PfGW456L13_4954at 5533.792 kb on - strand, within PfGW456L13_4954at 5533.792 kb on - strand, within PfGW456L13_4954at 5533.792 kb on - strand, within PfGW456L13_4954at 5533.828 kb on + strand, within PfGW456L13_4954at 5533.829 kb on - strand, within PfGW456L13_4954at 5533.924 kb on + strand, within PfGW456L13_4954at 5533.927 kb on + strand, within PfGW456L13_4954at 5533.927 kb on + strand, within PfGW456L13_4954at 5533.927 kb on + strand, within PfGW456L13_4954at 5533.927 kb on + strand, within PfGW456L13_4954at 5533.927 kb on + strand, within PfGW456L13_4954at 5533.927 kb on + strand, within PfGW456L13_4954at 5533.927 kb on + strand, within PfGW456L13_4954at 5533.927 kb on + strand, within PfGW456L13_4954at 5533.927 kb on + strand, within PfGW456L13_4954at 5533.927 kb on + strand, within PfGW456L13_4954at 5533.927 kb on + strand, within PfGW456L13_4954at 5533.927 kb on + strand, within PfGW456L13_4954at 5533.927 kb on + strand, within PfGW456L13_4954at 5533.927 kb on + strand, within PfGW456L13_4954at 5533.927 kb on + strand, within PfGW456L13_4954at 5533.928 kb on - strand, within PfGW456L13_4954at 5533.928 kb on - strand, within PfGW456L13_4954at 5533.928 kb on - strand, within PfGW456L13_4954at 5533.928 kb on - strand, within PfGW456L13_4954at 5533.928 kb on - strand, within PfGW456L13_4954at 5533.928 kb on - strand, within PfGW456L13_4954at 5533.928 kb on - strand, within PfGW456L13_4954at 5534.205 kb on + strand, within PfGW456L13_4954at 5534.307 kb on + strandat 5534.307 kb on + strandat 5534.344 kb on + strandat 5534.344 kb on + strandat 5534.344 kb on + strandat 5534.344 kb on + strandat 5534.344 kb on + strandat 5534.344 kb on + strandat 5534.345 kb on - strandat 5534.345 kb on - strandat 5534.418 kb on + strandat 5534.418 kb on + strandat 5534.418 kb on + strandat 5534.549 kb on + strandat 5534.595 kb on + strandat 5534.595 kb on + strandat 5534.596 kb on - strandat 5534.596 kb on - strandat 5534.596 kb on - strandat 5534.596 kb on - strandat 5534.596 kb on - strandat 5534.596 kb on - strandat 5534.596 kb on - strandat 5534.596 kb on - strandat 5534.596 kb on - strandat 5534.596 kb on - strandat 5534.596 kb on - strandat 5534.596 kb on - strandat 5534.596 kb on - strandat 5534.596 kb on - strandat 5534.596 kb on - strandat 5534.727 kb on + strandat 5534.749 kb on + strand, within PfGW456L13_4955at 5534.749 kb on + strand, within PfGW456L13_4955at 5534.749 kb on + strand, within PfGW456L13_4955at 5535.017 kb on - strandat 5535.059 kb on + strandat 5535.059 kb on + strandat 5535.059 kb on + strandat 5535.060 kb on - strandat 5535.060 kb on - strandat 5535.060 kb on - strandat 5535.060 kb on - strandat 5535.060 kb on - strandat 5535.116 kb on - strand, within PfGW456L13_4956at 5535.166 kb on + strand, within PfGW456L13_4956at 5535.166 kb on + strand, within PfGW456L13_4956at 5535.166 kb on + strand, within PfGW456L13_4956at 5535.166 kb on + strand, within PfGW456L13_4956at 5535.166 kb on + strand, within PfGW456L13_4956at 5535.166 kb on + strand, within PfGW456L13_4956at 5535.166 kb on + strand, within PfGW456L13_4956at 5535.167 kb on - strand, within PfGW456L13_4956at 5535.167 kb on - strand, within PfGW456L13_4956at 5535.167 kb on - strand, within PfGW456L13_4956at 5535.202 kb on - strand, within PfGW456L13_4956at 5535.202 kb on - strand, within PfGW456L13_4956at 5535.244 kb on + strand, within PfGW456L13_4956at 5535.244 kb on + strand, within PfGW456L13_4956at 5535.244 kb on + strand, within PfGW456L13_4956at 5535.244 kb on + strand, within PfGW456L13_4956at 5535.244 kb on + strand, within PfGW456L13_4956at 5535.245 kb on - strand, within PfGW456L13_4956at 5535.245 kb on - strand, within PfGW456L13_4956at 5535.245 kb on - strand, within PfGW456L13_4956at 5535.245 kb on - strand, within PfGW456L13_4956at 5535.283 kb on + strand, within PfGW456L13_4956at 5535.283 kb on + strand, within PfGW456L13_4956at 5535.313 kb on + strand, within PfGW456L13_4956at 5535.313 kb on + strand, within PfGW456L13_4956at 5535.314 kb on - strand, within PfGW456L13_4956at 5535.314 kb on - strand, within PfGW456L13_4956at 5535.314 kb on - strand, within PfGW456L13_4956at 5535.427 kb on + strand, within PfGW456L13_4956at 5535.428 kb on - strand, within PfGW456L13_4956at 5535.529 kb on + strandat 5535.529 kb on + strandat 5535.529 kb on + strandat 5535.530 kb on - strandat 5535.530 kb on - strandat 5535.530 kb on - strandat 5535.684 kb on + strandat 5535.684 kb on + strandat 5535.684 kb on + strandat 5535.684 kb on + strandat 5535.684 kb on + strandat 5535.684 kb on + strandat 5535.685 kb on - strandat 5535.690 kb on - strandat 5535.690 kb on - strandat 5535.690 kb on - strandat 5535.740 kb on + strandat 5535.744 kb on + strandat 5535.808 kb on + strandat 5535.808 kb on + strandat 5535.808 kb on + strandat 5535.808 kb on + strandat 5535.808 kb on + strandat 5535.809 kb on - strandat 5535.809 kb on - strandat 5535.809 kb on - strandat 5535.809 kb on - strandat 5535.809 kb on - strandat 5535.811 kb on - strandat 5535.848 kb on + strand, within PfGW456L13_4957at 5535.849 kb on - strand, within PfGW456L13_4957at 5535.963 kb on + strand, within PfGW456L13_4957at 5535.963 kb on + strand, within PfGW456L13_4957at 5535.963 kb on + strand, within PfGW456L13_4957at 5535.963 kb on + strand, within PfGW456L13_4957at 5535.964 kb on - strand, within PfGW456L13_4957at 5535.964 kb on - strand, within PfGW456L13_4957at 5535.964 kb on - strand, within PfGW456L13_4957at 5535.964 kb on - strand, within PfGW456L13_4957at 5535.964 kb on - strand, within PfGW456L13_4957at 5535.964 kb on - strand, within PfGW456L13_4957at 5535.964 kb on - strand, within PfGW456L13_4957

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
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5,533,791 + PfGW456L13_4954 0.56 -0.1
5,533,791 + PfGW456L13_4954 0.56 -1.9
5,533,791 + PfGW456L13_4954 0.56 +1.1
5,533,791 + PfGW456L13_4954 0.56 +0.1
5,533,791 + PfGW456L13_4954 0.56 -0.2
5,533,792 - PfGW456L13_4954 0.56 -0.5
5,533,792 - PfGW456L13_4954 0.56 -0.5
5,533,792 - PfGW456L13_4954 0.56 -0.2
5,533,792 - PfGW456L13_4954 0.56 +1.2
5,533,792 - PfGW456L13_4954 0.56 -0.4
5,533,792 - PfGW456L13_4954 0.56 -0.9
5,533,792 - PfGW456L13_4954 0.56 +0.7
5,533,792 - PfGW456L13_4954 0.56 -0.9
5,533,792 - PfGW456L13_4954 0.56 +0.3
5,533,792 - PfGW456L13_4954 0.56 +0.4
5,533,792 - PfGW456L13_4954 0.56 -0.1
5,533,792 - PfGW456L13_4954 0.56 -0.5
5,533,828 + PfGW456L13_4954 0.59 +0.1
5,533,829 - PfGW456L13_4954 0.59 +1.0
5,533,924 + PfGW456L13_4954 0.66 -0.3
5,533,927 + PfGW456L13_4954 0.66 -0.3
5,533,927 + PfGW456L13_4954 0.66 -0.0
5,533,927 + PfGW456L13_4954 0.66 -0.0
5,533,927 + PfGW456L13_4954 0.66 -0.4
5,533,927 + PfGW456L13_4954 0.66 +0.5
5,533,927 + PfGW456L13_4954 0.66 +0.5
5,533,927 + PfGW456L13_4954 0.66 -0.0
5,533,927 + PfGW456L13_4954 0.66 -1.0
5,533,927 + PfGW456L13_4954 0.66 -0.8
5,533,927 + PfGW456L13_4954 0.66 -0.1
5,533,927 + PfGW456L13_4954 0.66 -0.0
5,533,927 + PfGW456L13_4954 0.66 -1.3
5,533,927 + PfGW456L13_4954 0.66 -0.9
5,533,927 + PfGW456L13_4954 0.66 +1.2
5,533,927 + PfGW456L13_4954 0.66 +0.7
5,533,928 - PfGW456L13_4954 0.66 -0.2
5,533,928 - PfGW456L13_4954 0.66 -0.9
5,533,928 - PfGW456L13_4954 0.66 +0.7
5,533,928 - PfGW456L13_4954 0.66 +0.3
5,533,928 - PfGW456L13_4954 0.66 -1.0
5,533,928 - PfGW456L13_4954 0.66 +0.8
5,533,928 - PfGW456L13_4954 0.66 +0.2
5,534,205 + PfGW456L13_4954 0.86 -0.3
5,534,307 + -0.5
5,534,307 + +0.6
5,534,344 + -0.5
5,534,344 + -1.0
5,534,344 + +0.2
5,534,344 + +0.4
5,534,344 + +0.2
5,534,344 + +0.2
5,534,345 - +0.0
5,534,345 - -0.6
5,534,418 + -0.3
5,534,418 + +0.0
5,534,418 + +0.0
5,534,549 + +0.9
5,534,595 + +1.8
5,534,595 + +0.5
5,534,596 - +0.1
5,534,596 - +0.6
5,534,596 - +0.8
5,534,596 - +0.4
5,534,596 - -0.7
5,534,596 - +0.2
5,534,596 - +0.8
5,534,596 - +0.0
5,534,596 - +0.7
5,534,596 - -0.1
5,534,596 - -0.1
5,534,596 - +0.2
5,534,596 - -0.0
5,534,596 - -2.0
5,534,596 - +0.3
5,534,727 + +0.7
5,534,749 + PfGW456L13_4955 0.14 +1.4
5,534,749 + PfGW456L13_4955 0.14 -0.0
5,534,749 + PfGW456L13_4955 0.14 +1.0
5,535,017 - +0.3
5,535,059 + +0.0
5,535,059 + -1.4
5,535,059 + -1.8
5,535,060 - -0.5
5,535,060 - -1.2
5,535,060 - +0.3
5,535,060 - +1.2
5,535,060 - -0.3
5,535,116 - PfGW456L13_4956 0.20 -0.4
5,535,166 + PfGW456L13_4956 0.30 -0.5
5,535,166 + PfGW456L13_4956 0.30 +1.8
5,535,166 + PfGW456L13_4956 0.30 +0.0
5,535,166 + PfGW456L13_4956 0.30 -0.4
5,535,166 + PfGW456L13_4956 0.30 -0.1
5,535,166 + PfGW456L13_4956 0.30 +0.9
5,535,166 + PfGW456L13_4956 0.30 +0.1
5,535,167 - PfGW456L13_4956 0.30 -0.6
5,535,167 - PfGW456L13_4956 0.30 +1.2
5,535,167 - PfGW456L13_4956 0.30 +0.6
5,535,202 - PfGW456L13_4956 0.37 +0.4
5,535,202 - PfGW456L13_4956 0.37 -0.3
5,535,244 + PfGW456L13_4956 0.46 -0.2
5,535,244 + PfGW456L13_4956 0.46 +0.2
5,535,244 + PfGW456L13_4956 0.46 +0.5
5,535,244 + PfGW456L13_4956 0.46 -1.8
5,535,244 + PfGW456L13_4956 0.46 -2.3
5,535,245 - PfGW456L13_4956 0.46 +0.1
5,535,245 - PfGW456L13_4956 0.46 +0.3
5,535,245 - PfGW456L13_4956 0.46 +0.4
5,535,245 - PfGW456L13_4956 0.46 -0.3
5,535,283 + PfGW456L13_4956 0.53 -0.6
5,535,283 + PfGW456L13_4956 0.53 -0.1
5,535,313 + PfGW456L13_4956 0.59 +0.0
5,535,313 + PfGW456L13_4956 0.59 +0.4
5,535,314 - PfGW456L13_4956 0.60 +0.6
5,535,314 - PfGW456L13_4956 0.60 +0.4
5,535,314 - PfGW456L13_4956 0.60 +0.7
5,535,427 + PfGW456L13_4956 0.82 -0.2
5,535,428 - PfGW456L13_4956 0.82 +0.3
5,535,529 + -1.2
5,535,529 + -0.8
5,535,529 + +0.5
5,535,530 - +0.6
5,535,530 - +0.4
5,535,530 - +1.1
5,535,684 + +0.6
5,535,684 + +0.0
5,535,684 + -1.1
5,535,684 + -0.1
5,535,684 + +1.5
5,535,684 + +0.3
5,535,685 - -0.0
5,535,690 - -0.6
5,535,690 - -0.4
5,535,690 - +1.0
5,535,740 + -1.0
5,535,744 + +0.5
5,535,808 + +0.4
5,535,808 + -0.2
5,535,808 + +0.2
5,535,808 + +0.5
5,535,808 + -0.2
5,535,809 - -0.4
5,535,809 - +0.4
5,535,809 - -0.2
5,535,809 - -1.0
5,535,809 - -0.1
5,535,811 - +0.1
5,535,848 + PfGW456L13_4957 0.16 +0.5
5,535,849 - PfGW456L13_4957 0.16 +0.3
5,535,963 + PfGW456L13_4957 0.49 +0.3
5,535,963 + PfGW456L13_4957 0.49 -0.3
5,535,963 + PfGW456L13_4957 0.49 +0.1
5,535,963 + PfGW456L13_4957 0.49 +0.2
5,535,964 - PfGW456L13_4957 0.49 +0.7
5,535,964 - PfGW456L13_4957 0.49 +0.8
5,535,964 - PfGW456L13_4957 0.49 +0.3
5,535,964 - PfGW456L13_4957 0.49 +0.4
5,535,964 - PfGW456L13_4957 0.49 +0.7
5,535,964 - PfGW456L13_4957 0.49 +1.0
5,535,964 - PfGW456L13_4957 0.49 +0.3

Or see this region's nucleotide sequence