Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4936

Experiment: Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4935 and PfGW456L13_4936 are separated by 54 nucleotidesPfGW456L13_4936 and PfGW456L13_4937 are separated by 875 nucleotides PfGW456L13_4935 - Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-), at 5,512,093 to 5,514,072 _4935 PfGW456L13_4936 - Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-), at 5,514,127 to 5,515,035 _4936 PfGW456L13_4937 - Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation, at 5,515,911 to 5,516,420 _4937 Position (kb) 5514 5515 5516Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5513.171 kb on + strand, within PfGW456L13_4935at 5513.171 kb on + strand, within PfGW456L13_4935at 5513.261 kb on + strand, within PfGW456L13_4935at 5513.261 kb on + strand, within PfGW456L13_4935at 5513.261 kb on + strand, within PfGW456L13_4935at 5513.261 kb on + strand, within PfGW456L13_4935at 5513.261 kb on + strand, within PfGW456L13_4935at 5513.262 kb on - strand, within PfGW456L13_4935at 5513.262 kb on - strand, within PfGW456L13_4935at 5513.262 kb on - strand, within PfGW456L13_4935at 5513.262 kb on - strand, within PfGW456L13_4935at 5513.262 kb on - strand, within PfGW456L13_4935at 5513.300 kb on + strand, within PfGW456L13_4935at 5513.300 kb on + strand, within PfGW456L13_4935at 5513.300 kb on + strand, within PfGW456L13_4935at 5513.300 kb on + strand, within PfGW456L13_4935at 5513.301 kb on - strand, within PfGW456L13_4935at 5513.301 kb on - strand, within PfGW456L13_4935at 5513.301 kb on - strand, within PfGW456L13_4935at 5513.301 kb on - strand, within PfGW456L13_4935at 5513.301 kb on - strand, within PfGW456L13_4935at 5513.301 kb on - strand, within PfGW456L13_4935at 5513.301 kb on - strand, within PfGW456L13_4935at 5513.351 kb on + strand, within PfGW456L13_4935at 5513.351 kb on + strand, within PfGW456L13_4935at 5513.523 kb on + strand, within PfGW456L13_4935at 5513.555 kb on + strand, within PfGW456L13_4935at 5513.555 kb on + strand, within PfGW456L13_4935at 5513.555 kb on + strand, within PfGW456L13_4935at 5513.555 kb on + strand, within PfGW456L13_4935at 5513.556 kb on - strand, within PfGW456L13_4935at 5513.556 kb on - strand, within PfGW456L13_4935at 5513.559 kb on - strand, within PfGW456L13_4935at 5513.559 kb on - strand, within PfGW456L13_4935at 5513.583 kb on - strand, within PfGW456L13_4935at 5513.828 kb on + strand, within PfGW456L13_4935at 5513.829 kb on - strand, within PfGW456L13_4935at 5513.829 kb on - strand, within PfGW456L13_4935at 5513.883 kb on + strandat 5513.942 kb on + strandat 5513.942 kb on + strandat 5513.942 kb on + strandat 5513.942 kb on + strandat 5513.942 kb on + strandat 5513.942 kb on + strandat 5513.942 kb on + strandat 5513.943 kb on - strandat 5513.943 kb on - strandat 5513.943 kb on - strandat 5513.943 kb on - strandat 5513.943 kb on - strandat 5513.996 kb on + strandat 5513.996 kb on + strandat 5513.996 kb on + strandat 5514.014 kb on + strandat 5514.014 kb on + strandat 5514.014 kb on + strandat 5514.015 kb on - strandat 5514.015 kb on - strandat 5514.015 kb on - strandat 5514.015 kb on - strandat 5514.074 kb on - strandat 5514.109 kb on + strandat 5514.109 kb on + strandat 5514.110 kb on - strandat 5514.110 kb on - strandat 5514.115 kb on - strandat 5514.239 kb on + strand, within PfGW456L13_4936at 5514.239 kb on + strand, within PfGW456L13_4936at 5514.239 kb on + strand, within PfGW456L13_4936at 5514.239 kb on + strand, within PfGW456L13_4936at 5514.239 kb on + strand, within PfGW456L13_4936at 5514.239 kb on + strand, within PfGW456L13_4936at 5514.240 kb on - strand, within PfGW456L13_4936at 5514.285 kb on - strand, within PfGW456L13_4936at 5514.285 kb on - strand, within PfGW456L13_4936at 5514.285 kb on - strand, within PfGW456L13_4936at 5514.329 kb on + strand, within PfGW456L13_4936at 5514.351 kb on + strand, within PfGW456L13_4936at 5514.351 kb on + strand, within PfGW456L13_4936at 5514.351 kb on + strand, within PfGW456L13_4936at 5514.351 kb on + strand, within PfGW456L13_4936at 5514.351 kb on + strand, within PfGW456L13_4936at 5514.351 kb on + strand, within PfGW456L13_4936at 5514.351 kb on + strand, within PfGW456L13_4936at 5514.351 kb on + strand, within PfGW456L13_4936at 5514.352 kb on - strand, within PfGW456L13_4936at 5514.352 kb on - strand, within PfGW456L13_4936at 5514.446 kb on + strand, within PfGW456L13_4936at 5514.446 kb on + strand, within PfGW456L13_4936at 5514.459 kb on + strand, within PfGW456L13_4936at 5514.460 kb on - strand, within PfGW456L13_4936at 5514.460 kb on - strand, within PfGW456L13_4936at 5514.650 kb on + strand, within PfGW456L13_4936at 5514.725 kb on + strand, within PfGW456L13_4936at 5514.726 kb on - strand, within PfGW456L13_4936at 5514.752 kb on + strand, within PfGW456L13_4936at 5514.752 kb on + strand, within PfGW456L13_4936at 5514.752 kb on + strand, within PfGW456L13_4936at 5514.752 kb on + strand, within PfGW456L13_4936at 5514.753 kb on - strand, within PfGW456L13_4936at 5514.753 kb on - strand, within PfGW456L13_4936at 5514.753 kb on - strand, within PfGW456L13_4936at 5514.753 kb on - strand, within PfGW456L13_4936at 5514.762 kb on - strand, within PfGW456L13_4936at 5514.762 kb on - strand, within PfGW456L13_4936at 5514.842 kb on + strand, within PfGW456L13_4936at 5514.842 kb on + strand, within PfGW456L13_4936at 5514.842 kb on + strand, within PfGW456L13_4936at 5514.842 kb on + strand, within PfGW456L13_4936at 5514.842 kb on + strand, within PfGW456L13_4936at 5514.842 kb on + strand, within PfGW456L13_4936at 5514.843 kb on - strand, within PfGW456L13_4936at 5514.843 kb on - strand, within PfGW456L13_4936at 5514.843 kb on - strand, within PfGW456L13_4936at 5514.843 kb on - strand, within PfGW456L13_4936at 5514.843 kb on - strand, within PfGW456L13_4936at 5514.846 kb on + strand, within PfGW456L13_4936at 5514.846 kb on + strand, within PfGW456L13_4936at 5514.847 kb on - strand, within PfGW456L13_4936at 5514.870 kb on - strand, within PfGW456L13_4936at 5515.036 kb on + strandat 5515.036 kb on + strandat 5515.037 kb on - strandat 5515.042 kb on + strandat 5515.042 kb on + strandat 5515.042 kb on + strandat 5515.042 kb on + strandat 5515.042 kb on + strandat 5515.042 kb on + strandat 5515.043 kb on - strandat 5515.043 kb on - strandat 5515.043 kb on - strandat 5515.043 kb on - strandat 5515.043 kb on - strandat 5515.043 kb on - strandat 5515.045 kb on + strandat 5515.045 kb on + strandat 5515.045 kb on + strandat 5515.046 kb on - strandat 5515.046 kb on - strandat 5515.055 kb on + strandat 5515.056 kb on - strandat 5515.083 kb on + strandat 5515.083 kb on + strandat 5515.164 kb on + strandat 5515.165 kb on - strandat 5515.165 kb on - strandat 5515.196 kb on - strandat 5515.196 kb on - strandat 5515.235 kb on - strandat 5515.235 kb on - strandat 5515.254 kb on + strandat 5515.254 kb on + strandat 5515.255 kb on - strandat 5515.255 kb on - strandat 5515.280 kb on + strandat 5515.397 kb on + strandat 5515.397 kb on + strandat 5515.397 kb on + strandat 5515.397 kb on + strandat 5515.398 kb on - strandat 5515.398 kb on - strandat 5515.398 kb on - strandat 5515.398 kb on - strandat 5515.398 kb on - strandat 5515.398 kb on - strandat 5515.401 kb on + strandat 5515.401 kb on + strandat 5515.401 kb on + strandat 5515.401 kb on + strandat 5515.401 kb on + strandat 5515.401 kb on + strandat 5515.401 kb on + strandat 5515.401 kb on + strandat 5515.402 kb on - strandat 5515.402 kb on - strandat 5515.402 kb on - strandat 5515.402 kb on - strandat 5515.402 kb on - strandat 5515.402 kb on - strandat 5515.402 kb on - strandat 5515.402 kb on - strandat 5515.405 kb on + strandat 5515.405 kb on + strandat 5515.405 kb on + strandat 5515.405 kb on + strandat 5515.405 kb on + strandat 5515.405 kb on + strandat 5515.405 kb on + strandat 5515.405 kb on + strandat 5515.406 kb on - strandat 5515.406 kb on - strandat 5515.406 kb on - strandat 5515.406 kb on - strandat 5515.406 kb on - strandat 5515.406 kb on - strandat 5515.406 kb on - strandat 5515.437 kb on + strandat 5515.527 kb on + strandat 5515.528 kb on - strandat 5515.528 kb on - strandat 5515.558 kb on + strandat 5515.558 kb on + strandat 5515.638 kb on - strandat 5515.702 kb on - strandat 5515.892 kb on + strandat 5515.892 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
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5,513,171 + PfGW456L13_4935 0.54 +1.2
5,513,171 + PfGW456L13_4935 0.54 +0.2
5,513,261 + PfGW456L13_4935 0.59 +0.5
5,513,261 + PfGW456L13_4935 0.59 +1.4
5,513,261 + PfGW456L13_4935 0.59 +0.6
5,513,261 + PfGW456L13_4935 0.59 +1.2
5,513,261 + PfGW456L13_4935 0.59 +0.8
5,513,262 - PfGW456L13_4935 0.59 +0.2
5,513,262 - PfGW456L13_4935 0.59 +0.8
5,513,262 - PfGW456L13_4935 0.59 +0.0
5,513,262 - PfGW456L13_4935 0.59 +0.1
5,513,262 - PfGW456L13_4935 0.59 +0.5
5,513,300 + PfGW456L13_4935 0.61 -0.2
5,513,300 + PfGW456L13_4935 0.61 -1.0
5,513,300 + PfGW456L13_4935 0.61 +1.0
5,513,300 + PfGW456L13_4935 0.61 -1.0
5,513,301 - PfGW456L13_4935 0.61 +0.3
5,513,301 - PfGW456L13_4935 0.61 +0.9
5,513,301 - PfGW456L13_4935 0.61 +0.8
5,513,301 - PfGW456L13_4935 0.61 -0.2
5,513,301 - PfGW456L13_4935 0.61 +0.2
5,513,301 - PfGW456L13_4935 0.61 +1.0
5,513,301 - PfGW456L13_4935 0.61 +0.0
5,513,351 + PfGW456L13_4935 0.64 -0.3
5,513,351 + PfGW456L13_4935 0.64 +0.4
5,513,523 + PfGW456L13_4935 0.72 +0.6
5,513,555 + PfGW456L13_4935 0.74 -1.8
5,513,555 + PfGW456L13_4935 0.74 +0.7
5,513,555 + PfGW456L13_4935 0.74 +1.6
5,513,555 + PfGW456L13_4935 0.74 +0.8
5,513,556 - PfGW456L13_4935 0.74 -0.1
5,513,556 - PfGW456L13_4935 0.74 -0.5
5,513,559 - PfGW456L13_4935 0.74 -0.4
5,513,559 - PfGW456L13_4935 0.74 -1.0
5,513,583 - PfGW456L13_4935 0.75 +1.2
5,513,828 + PfGW456L13_4935 0.88 +1.8
5,513,829 - PfGW456L13_4935 0.88 -0.4
5,513,829 - PfGW456L13_4935 0.88 +0.8
5,513,883 + -0.6
5,513,942 + +0.9
5,513,942 + +0.2
5,513,942 + +0.6
5,513,942 + +0.6
5,513,942 + +1.3
5,513,942 + +0.6
5,513,942 + +1.0
5,513,943 - +0.5
5,513,943 - +0.4
5,513,943 - -1.2
5,513,943 - -0.0
5,513,943 - +0.4
5,513,996 + +0.2
5,513,996 + +0.3
5,513,996 + -1.0
5,514,014 + +1.8
5,514,014 + +2.8
5,514,014 + +0.0
5,514,015 - -0.5
5,514,015 - +1.4
5,514,015 - -0.4
5,514,015 - +0.2
5,514,074 - +0.3
5,514,109 + +0.5
5,514,109 + +0.7
5,514,110 - +1.0
5,514,110 - +1.0
5,514,115 - +0.3
5,514,239 + PfGW456L13_4936 0.12 +0.0
5,514,239 + PfGW456L13_4936 0.12 +0.4
5,514,239 + PfGW456L13_4936 0.12 +1.0
5,514,239 + PfGW456L13_4936 0.12 +0.1
5,514,239 + PfGW456L13_4936 0.12 -0.3
5,514,239 + PfGW456L13_4936 0.12 +1.0
5,514,240 - PfGW456L13_4936 0.12 +0.4
5,514,285 - PfGW456L13_4936 0.17 -2.3
5,514,285 - PfGW456L13_4936 0.17 -1.1
5,514,285 - PfGW456L13_4936 0.17 -1.4
5,514,329 + PfGW456L13_4936 0.22 +0.4
5,514,351 + PfGW456L13_4936 0.25 +0.3
5,514,351 + PfGW456L13_4936 0.25 +0.4
5,514,351 + PfGW456L13_4936 0.25 +0.8
5,514,351 + PfGW456L13_4936 0.25 +0.5
5,514,351 + PfGW456L13_4936 0.25 -1.8
5,514,351 + PfGW456L13_4936 0.25 -0.0
5,514,351 + PfGW456L13_4936 0.25 +1.0
5,514,351 + PfGW456L13_4936 0.25 -1.4
5,514,352 - PfGW456L13_4936 0.25 +0.1
5,514,352 - PfGW456L13_4936 0.25 +0.7
5,514,446 + PfGW456L13_4936 0.35 -1.1
5,514,446 + PfGW456L13_4936 0.35 +1.6
5,514,459 + PfGW456L13_4936 0.37 -0.2
5,514,460 - PfGW456L13_4936 0.37 +0.2
5,514,460 - PfGW456L13_4936 0.37 +1.2
5,514,650 + PfGW456L13_4936 0.58 +0.7
5,514,725 + PfGW456L13_4936 0.66 +0.4
5,514,726 - PfGW456L13_4936 0.66 +1.2
5,514,752 + PfGW456L13_4936 0.69 +1.0
5,514,752 + PfGW456L13_4936 0.69 +0.8
5,514,752 + PfGW456L13_4936 0.69 -0.7
5,514,752 + PfGW456L13_4936 0.69 -0.4
5,514,753 - PfGW456L13_4936 0.69 +0.5
5,514,753 - PfGW456L13_4936 0.69 +0.6
5,514,753 - PfGW456L13_4936 0.69 +0.1
5,514,753 - PfGW456L13_4936 0.69 +1.2
5,514,762 - PfGW456L13_4936 0.70 +1.2
5,514,762 - PfGW456L13_4936 0.70 +1.5
5,514,842 + PfGW456L13_4936 0.79 +1.8
5,514,842 + PfGW456L13_4936 0.79 +1.8
5,514,842 + PfGW456L13_4936 0.79 +0.5
5,514,842 + PfGW456L13_4936 0.79 +1.8
5,514,842 + PfGW456L13_4936 0.79 -0.1
5,514,842 + PfGW456L13_4936 0.79 +0.6
5,514,843 - PfGW456L13_4936 0.79 +0.2
5,514,843 - PfGW456L13_4936 0.79 +0.4
5,514,843 - PfGW456L13_4936 0.79 -0.1
5,514,843 - PfGW456L13_4936 0.79 +0.9
5,514,843 - PfGW456L13_4936 0.79 +0.8
5,514,846 + PfGW456L13_4936 0.79 +2.1
5,514,846 + PfGW456L13_4936 0.79 +0.8
5,514,847 - PfGW456L13_4936 0.79 -0.6
5,514,870 - PfGW456L13_4936 0.82 +1.0
5,515,036 + +0.6
5,515,036 + +0.2
5,515,037 - +1.5
5,515,042 + -1.0
5,515,042 + +1.0
5,515,042 + -0.5
5,515,042 + +0.8
5,515,042 + +1.6
5,515,042 + +0.8
5,515,043 - +2.0
5,515,043 - +0.1
5,515,043 - -0.2
5,515,043 - +1.0
5,515,043 - +0.6
5,515,043 - +0.8
5,515,045 + -0.1
5,515,045 + +1.7
5,515,045 + +2.6
5,515,046 - +1.3
5,515,046 - +0.3
5,515,055 + -0.1
5,515,056 - +1.6
5,515,083 + +1.0
5,515,083 + +0.1
5,515,164 + +0.6
5,515,165 - -0.6
5,515,165 - -0.1
5,515,196 - -0.3
5,515,196 - -0.5
5,515,235 - +0.2
5,515,235 - +0.0
5,515,254 + +0.6
5,515,254 + +0.9
5,515,255 - -0.2
5,515,255 - +0.5
5,515,280 + +0.2
5,515,397 + +0.7
5,515,397 + +1.5
5,515,397 + +0.8
5,515,397 + +0.8
5,515,398 - +0.0
5,515,398 - -0.4
5,515,398 - -0.8
5,515,398 - -0.0
5,515,398 - -0.5
5,515,398 - +0.6
5,515,401 + +1.2
5,515,401 + -0.8
5,515,401 + +1.0
5,515,401 + -0.6
5,515,401 + +0.4
5,515,401 + -0.1
5,515,401 + +1.9
5,515,401 + +0.7
5,515,402 - +0.8
5,515,402 - -0.2
5,515,402 - -1.1
5,515,402 - +0.2
5,515,402 - +0.5
5,515,402 - -2.3
5,515,402 - -0.1
5,515,402 - +0.2
5,515,405 + -0.6
5,515,405 + +0.2
5,515,405 + +0.6
5,515,405 + -1.2
5,515,405 + -0.1
5,515,405 + +1.4
5,515,405 + +1.7
5,515,405 + -1.0
5,515,406 - +0.4
5,515,406 - -0.5
5,515,406 - -0.2
5,515,406 - +0.4
5,515,406 - +0.5
5,515,406 - +0.8
5,515,406 - +0.6
5,515,437 + +0.5
5,515,527 + +0.1
5,515,528 - -0.6
5,515,528 - -0.3
5,515,558 + -0.1
5,515,558 + +1.0
5,515,638 - +0.4
5,515,702 - +0.3
5,515,892 + -0.3
5,515,892 + +0.7

Or see this region's nucleotide sequence