Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4934

Experiment: Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4932 and PfGW456L13_4933 are separated by 11 nucleotidesPfGW456L13_4933 and PfGW456L13_4934 are separated by 0 nucleotidesPfGW456L13_4934 and PfGW456L13_4935 are separated by 78 nucleotides PfGW456L13_4932 - Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB, at 5,510,228 to 5,511,115 _4932 PfGW456L13_4933 - Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-), at 5,511,127 to 5,511,468 _4933 PfGW456L13_4934 - Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-), at 5,511,469 to 5,512,014 _4934 PfGW456L13_4935 - Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-), at 5,512,093 to 5,514,072 _4935 Position (kb) 5511 5512 5513Strain fitness (log2 ratio) -1 0 1 2 3at 5510.481 kb on + strand, within PfGW456L13_4932at 5510.481 kb on + strand, within PfGW456L13_4932at 5510.481 kb on + strand, within PfGW456L13_4932at 5510.481 kb on + strand, within PfGW456L13_4932at 5510.481 kb on + strand, within PfGW456L13_4932at 5510.482 kb on - strand, within PfGW456L13_4932at 5510.482 kb on - strand, within PfGW456L13_4932at 5510.553 kb on + strand, within PfGW456L13_4932at 5510.553 kb on + strand, within PfGW456L13_4932at 5510.583 kb on + strand, within PfGW456L13_4932at 5510.584 kb on - strand, within PfGW456L13_4932at 5510.584 kb on - strand, within PfGW456L13_4932at 5510.584 kb on - strand, within PfGW456L13_4932at 5510.584 kb on - strand, within PfGW456L13_4932at 5510.584 kb on - strand, within PfGW456L13_4932at 5510.664 kb on + strand, within PfGW456L13_4932at 5510.737 kb on - strandat 5510.737 kb on - strand, within PfGW456L13_4932at 5510.745 kb on + strandat 5510.745 kb on + strand, within PfGW456L13_4932at 5510.745 kb on + strand, within PfGW456L13_4932at 5510.746 kb on - strand, within PfGW456L13_4932at 5510.757 kb on + strand, within PfGW456L13_4932at 5510.757 kb on + strand, within PfGW456L13_4932at 5510.757 kb on + strand, within PfGW456L13_4932at 5510.757 kb on + strand, within PfGW456L13_4932at 5510.757 kb on + strand, within PfGW456L13_4932at 5510.758 kb on - strand, within PfGW456L13_4932at 5510.758 kb on - strand, within PfGW456L13_4932at 5510.811 kb on + strand, within PfGW456L13_4932at 5510.811 kb on + strand, within PfGW456L13_4932at 5510.811 kb on + strand, within PfGW456L13_4932at 5510.812 kb on - strand, within PfGW456L13_4932at 5510.812 kb on - strand, within PfGW456L13_4932at 5510.812 kb on - strand, within PfGW456L13_4932at 5510.812 kb on - strand, within PfGW456L13_4932at 5510.851 kb on - strand, within PfGW456L13_4932at 5510.851 kb on - strand, within PfGW456L13_4932at 5511.098 kb on - strandat 5511.123 kb on + strandat 5511.123 kb on + strandat 5511.266 kb on + strand, within PfGW456L13_4933at 5511.266 kb on + strand, within PfGW456L13_4933at 5511.267 kb on - strand, within PfGW456L13_4933at 5511.345 kb on - strand, within PfGW456L13_4933at 5511.404 kb on + strand, within PfGW456L13_4933at 5511.405 kb on - strand, within PfGW456L13_4933at 5511.405 kb on - strand, within PfGW456L13_4933at 5511.413 kb on + strand, within PfGW456L13_4933at 5511.413 kb on + strand, within PfGW456L13_4933at 5511.413 kb on + strand, within PfGW456L13_4933at 5511.414 kb on - strand, within PfGW456L13_4933at 5511.414 kb on - strand, within PfGW456L13_4933at 5511.414 kb on - strand, within PfGW456L13_4933at 5511.470 kb on + strandat 5511.470 kb on + strandat 5511.470 kb on + strandat 5511.470 kb on + strandat 5511.470 kb on + strandat 5511.470 kb on + strandat 5511.471 kb on - strandat 5511.471 kb on - strandat 5511.471 kb on - strandat 5511.471 kb on - strandat 5511.471 kb on - strandat 5511.474 kb on + strandat 5511.475 kb on - strandat 5511.489 kb on - strandat 5511.599 kb on + strand, within PfGW456L13_4934at 5511.599 kb on + strand, within PfGW456L13_4934at 5511.599 kb on + strand, within PfGW456L13_4934at 5511.599 kb on + strand, within PfGW456L13_4934at 5511.600 kb on - strand, within PfGW456L13_4934at 5511.600 kb on - strand, within PfGW456L13_4934at 5511.600 kb on - strand, within PfGW456L13_4934at 5511.600 kb on - strand, within PfGW456L13_4934at 5511.600 kb on - strand, within PfGW456L13_4934at 5511.600 kb on - strand, within PfGW456L13_4934at 5511.600 kb on - strand, within PfGW456L13_4934at 5511.812 kb on + strand, within PfGW456L13_4934at 5511.836 kb on + strand, within PfGW456L13_4934at 5511.836 kb on + strand, within PfGW456L13_4934at 5511.836 kb on + strand, within PfGW456L13_4934at 5511.836 kb on + strand, within PfGW456L13_4934at 5511.881 kb on + strand, within PfGW456L13_4934at 5511.881 kb on + strand, within PfGW456L13_4934at 5511.881 kb on + strand, within PfGW456L13_4934at 5511.882 kb on - strand, within PfGW456L13_4934at 5511.882 kb on - strand, within PfGW456L13_4934at 5511.882 kb on - strand, within PfGW456L13_4934at 5511.882 kb on - strand, within PfGW456L13_4934at 5511.923 kb on - strand, within PfGW456L13_4934at 5511.944 kb on + strand, within PfGW456L13_4934at 5511.945 kb on - strand, within PfGW456L13_4934at 5511.945 kb on - strand, within PfGW456L13_4934at 5511.990 kb on - strandat 5512.005 kb on - strandat 5512.006 kb on + strandat 5512.006 kb on + strandat 5512.006 kb on + strandat 5512.007 kb on - strandat 5512.007 kb on - strandat 5512.078 kb on + strandat 5512.079 kb on - strandat 5512.094 kb on + strandat 5512.094 kb on + strandat 5512.209 kb on + strandat 5512.209 kb on + strandat 5512.211 kb on + strandat 5512.211 kb on + strandat 5512.211 kb on + strandat 5512.212 kb on - strandat 5512.212 kb on - strandat 5512.212 kb on - strandat 5512.212 kb on - strandat 5512.359 kb on + strand, within PfGW456L13_4935at 5512.360 kb on - strand, within PfGW456L13_4935at 5512.379 kb on + strand, within PfGW456L13_4935at 5512.379 kb on + strand, within PfGW456L13_4935at 5512.380 kb on - strand, within PfGW456L13_4935at 5512.380 kb on - strand, within PfGW456L13_4935at 5512.380 kb on - strand, within PfGW456L13_4935at 5512.470 kb on - strand, within PfGW456L13_4935at 5512.574 kb on + strand, within PfGW456L13_4935at 5512.574 kb on + strand, within PfGW456L13_4935at 5512.575 kb on - strand, within PfGW456L13_4935at 5512.575 kb on - strand, within PfGW456L13_4935at 5512.575 kb on - strand, within PfGW456L13_4935at 5512.808 kb on + strand, within PfGW456L13_4935at 5512.808 kb on + strand, within PfGW456L13_4935at 5512.808 kb on + strand, within PfGW456L13_4935at 5512.809 kb on - strand, within PfGW456L13_4935at 5512.809 kb on - strand, within PfGW456L13_4935at 5512.830 kb on - strand, within PfGW456L13_4935at 5512.928 kb on - strand, within PfGW456L13_4935at 5513.012 kb on + strand, within PfGW456L13_4935at 5513.013 kb on - strand, within PfGW456L13_4935at 5513.013 kb on - strand, within PfGW456L13_4935at 5513.013 kb on - strand, within PfGW456L13_4935at 5513.013 kb on - strand, within PfGW456L13_4935

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
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5,510,481 + PfGW456L13_4932 0.28 +1.7
5,510,481 + PfGW456L13_4932 0.28 +1.2
5,510,481 + PfGW456L13_4932 0.28 +0.7
5,510,481 + PfGW456L13_4932 0.28 +0.4
5,510,481 + PfGW456L13_4932 0.28 +0.0
5,510,482 - PfGW456L13_4932 0.29 +1.2
5,510,482 - PfGW456L13_4932 0.29 +1.4
5,510,553 + PfGW456L13_4932 0.37 -0.1
5,510,553 + PfGW456L13_4932 0.37 +0.0
5,510,583 + PfGW456L13_4932 0.40 +0.4
5,510,584 - PfGW456L13_4932 0.40 -0.2
5,510,584 - PfGW456L13_4932 0.40 +0.9
5,510,584 - PfGW456L13_4932 0.40 +0.0
5,510,584 - PfGW456L13_4932 0.40 +1.0
5,510,584 - PfGW456L13_4932 0.40 +0.2
5,510,664 + PfGW456L13_4932 0.49 +0.5
5,510,737 - +3.3
5,510,737 - PfGW456L13_4932 0.57 +0.3
5,510,745 + +0.4
5,510,745 + PfGW456L13_4932 0.58 +2.1
5,510,745 + PfGW456L13_4932 0.58 +0.1
5,510,746 - PfGW456L13_4932 0.58 +0.7
5,510,757 + PfGW456L13_4932 0.60 +1.5
5,510,757 + PfGW456L13_4932 0.60 +0.4
5,510,757 + PfGW456L13_4932 0.60 +0.8
5,510,757 + PfGW456L13_4932 0.60 +1.4
5,510,757 + PfGW456L13_4932 0.60 +0.2
5,510,758 - PfGW456L13_4932 0.60 +1.1
5,510,758 - PfGW456L13_4932 0.60 +0.1
5,510,811 + PfGW456L13_4932 0.66 +3.6
5,510,811 + PfGW456L13_4932 0.66 -0.7
5,510,811 + PfGW456L13_4932 0.66 +1.4
5,510,812 - PfGW456L13_4932 0.66 +0.4
5,510,812 - PfGW456L13_4932 0.66 +0.6
5,510,812 - PfGW456L13_4932 0.66 +0.2
5,510,812 - PfGW456L13_4932 0.66 +1.0
5,510,851 - PfGW456L13_4932 0.70 +1.2
5,510,851 - PfGW456L13_4932 0.70 +2.2
5,511,098 - +0.0
5,511,123 + +0.5
5,511,123 + +0.3
5,511,266 + PfGW456L13_4933 0.41 +0.3
5,511,266 + PfGW456L13_4933 0.41 -0.0
5,511,267 - PfGW456L13_4933 0.41 -0.3
5,511,345 - PfGW456L13_4933 0.64 +1.0
5,511,404 + PfGW456L13_4933 0.81 +0.5
5,511,405 - PfGW456L13_4933 0.81 -0.3
5,511,405 - PfGW456L13_4933 0.81 +0.5
5,511,413 + PfGW456L13_4933 0.84 +1.7
5,511,413 + PfGW456L13_4933 0.84 +0.3
5,511,413 + PfGW456L13_4933 0.84 +0.0
5,511,414 - PfGW456L13_4933 0.84 -0.2
5,511,414 - PfGW456L13_4933 0.84 +1.1
5,511,414 - PfGW456L13_4933 0.84 -0.4
5,511,470 + -1.1
5,511,470 + +1.6
5,511,470 + +0.5
5,511,470 + +3.1
5,511,470 + +0.0
5,511,470 + +0.9
5,511,471 - -0.3
5,511,471 - +2.1
5,511,471 - +1.0
5,511,471 - -0.7
5,511,471 - +1.0
5,511,474 + -1.4
5,511,475 - +0.0
5,511,489 - +0.4
5,511,599 + PfGW456L13_4934 0.24 -0.6
5,511,599 + PfGW456L13_4934 0.24 +0.0
5,511,599 + PfGW456L13_4934 0.24 +0.6
5,511,599 + PfGW456L13_4934 0.24 +1.4
5,511,600 - PfGW456L13_4934 0.24 -0.1
5,511,600 - PfGW456L13_4934 0.24 -0.1
5,511,600 - PfGW456L13_4934 0.24 +1.3
5,511,600 - PfGW456L13_4934 0.24 +0.4
5,511,600 - PfGW456L13_4934 0.24 +1.0
5,511,600 - PfGW456L13_4934 0.24 +0.8
5,511,600 - PfGW456L13_4934 0.24 +0.8
5,511,812 + PfGW456L13_4934 0.63 +0.2
5,511,836 + PfGW456L13_4934 0.67 +0.3
5,511,836 + PfGW456L13_4934 0.67 +0.2
5,511,836 + PfGW456L13_4934 0.67 -0.3
5,511,836 + PfGW456L13_4934 0.67 +0.9
5,511,881 + PfGW456L13_4934 0.75 +0.6
5,511,881 + PfGW456L13_4934 0.75 -0.2
5,511,881 + PfGW456L13_4934 0.75 +0.8
5,511,882 - PfGW456L13_4934 0.76 +0.3
5,511,882 - PfGW456L13_4934 0.76 +0.1
5,511,882 - PfGW456L13_4934 0.76 +0.0
5,511,882 - PfGW456L13_4934 0.76 +0.8
5,511,923 - PfGW456L13_4934 0.83 +0.4
5,511,944 + PfGW456L13_4934 0.87 +0.0
5,511,945 - PfGW456L13_4934 0.87 +1.0
5,511,945 - PfGW456L13_4934 0.87 +0.0
5,511,990 - -0.4
5,512,005 - -0.3
5,512,006 + -0.6
5,512,006 + -0.2
5,512,006 + +1.2
5,512,007 - +0.4
5,512,007 - -0.6
5,512,078 + +0.8
5,512,079 - -1.7
5,512,094 + +0.4
5,512,094 + +1.2
5,512,209 + +0.5
5,512,209 + +0.7
5,512,211 + +0.6
5,512,211 + +1.0
5,512,211 + +2.6
5,512,212 - +0.3
5,512,212 - +0.8
5,512,212 - -0.1
5,512,212 - +1.8
5,512,359 + PfGW456L13_4935 0.13 +0.0
5,512,360 - PfGW456L13_4935 0.13 +0.3
5,512,379 + PfGW456L13_4935 0.14 -0.3
5,512,379 + PfGW456L13_4935 0.14 +3.2
5,512,380 - PfGW456L13_4935 0.14 +0.8
5,512,380 - PfGW456L13_4935 0.14 +1.2
5,512,380 - PfGW456L13_4935 0.14 +1.3
5,512,470 - PfGW456L13_4935 0.19 +0.7
5,512,574 + PfGW456L13_4935 0.24 -0.6
5,512,574 + PfGW456L13_4935 0.24 -0.4
5,512,575 - PfGW456L13_4935 0.24 +0.6
5,512,575 - PfGW456L13_4935 0.24 +0.0
5,512,575 - PfGW456L13_4935 0.24 -0.6
5,512,808 + PfGW456L13_4935 0.36 -0.3
5,512,808 + PfGW456L13_4935 0.36 -0.7
5,512,808 + PfGW456L13_4935 0.36 +0.2
5,512,809 - PfGW456L13_4935 0.36 -0.4
5,512,809 - PfGW456L13_4935 0.36 +0.8
5,512,830 - PfGW456L13_4935 0.37 +2.1
5,512,928 - PfGW456L13_4935 0.42 +0.0
5,513,012 + PfGW456L13_4935 0.46 +0.3
5,513,013 - PfGW456L13_4935 0.46 +0.2
5,513,013 - PfGW456L13_4935 0.46 +0.6
5,513,013 - PfGW456L13_4935 0.46 -1.3
5,513,013 - PfGW456L13_4935 0.46 -1.3

Or see this region's nucleotide sequence