Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4918

Experiment: Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4917 and PfGW456L13_4918 are separated by 323 nucleotidesPfGW456L13_4918 and PfGW456L13_4919 are separated by 235 nucleotides PfGW456L13_4917 - Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-), at 5,493,383 to 5,494,903 _4917 PfGW456L13_4918 - FIG00959654: hypothetical protein, at 5,495,227 to 5,495,931 _4918 PfGW456L13_4919 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 5,496,167 to 5,497,597 _4919 Position (kb) 5495 5496Strain fitness (log2 ratio) -1 0 1 2at 5494.386 kb on + strandat 5494.387 kb on - strand, within PfGW456L13_4917at 5494.885 kb on + strandat 5494.886 kb on - strandat 5494.886 kb on - strandat 5495.092 kb on + strandat 5495.154 kb on + strandat 5495.154 kb on + strandat 5495.154 kb on + strandat 5495.154 kb on + strandat 5495.155 kb on - strandat 5495.155 kb on - strandat 5495.155 kb on - strandat 5495.155 kb on - strandat 5495.155 kb on - strandat 5495.159 kb on + strandat 5495.159 kb on + strandat 5495.160 kb on - strandat 5495.160 kb on - strandat 5495.196 kb on + strandat 5495.214 kb on + strandat 5495.215 kb on - strandat 5495.215 kb on - strandat 5495.241 kb on + strandat 5495.255 kb on + strandat 5495.256 kb on - strandat 5495.433 kb on + strand, within PfGW456L13_4918at 5495.433 kb on + strand, within PfGW456L13_4918at 5495.440 kb on + strand, within PfGW456L13_4918at 5495.441 kb on - strand, within PfGW456L13_4918at 5495.441 kb on - strand, within PfGW456L13_4918at 5495.582 kb on - strand, within PfGW456L13_4918at 5495.681 kb on + strand, within PfGW456L13_4918at 5495.682 kb on - strand, within PfGW456L13_4918at 5495.682 kb on - strand, within PfGW456L13_4918at 5495.912 kb on - strandat 5495.930 kb on - strandat 5495.932 kb on + strandat 5495.932 kb on + strandat 5495.932 kb on + strandat 5495.933 kb on - strandat 5495.933 kb on - strandat 5495.933 kb on - strandat 5495.933 kb on - strandat 5496.045 kb on - strandat 5496.080 kb on - strandat 5496.185 kb on + strandat 5496.186 kb on - strandat 5496.206 kb on + strandat 5496.207 kb on - strandat 5496.207 kb on - strandat 5496.207 kb on - strandat 5496.332 kb on + strand, within PfGW456L13_4919at 5496.332 kb on + strand, within PfGW456L13_4919at 5496.333 kb on - strand, within PfGW456L13_4919at 5496.333 kb on - strand, within PfGW456L13_4919at 5496.333 kb on - strandat 5496.368 kb on + strand, within PfGW456L13_4919at 5496.368 kb on + strand, within PfGW456L13_4919at 5496.368 kb on + strand, within PfGW456L13_4919at 5496.369 kb on - strand, within PfGW456L13_4919at 5496.440 kb on + strand, within PfGW456L13_4919at 5496.440 kb on + strand, within PfGW456L13_4919at 5496.440 kb on + strand, within PfGW456L13_4919at 5496.585 kb on - strand, within PfGW456L13_4919at 5496.791 kb on + strand, within PfGW456L13_4919at 5496.791 kb on + strand, within PfGW456L13_4919at 5496.791 kb on + strand, within PfGW456L13_4919at 5496.791 kb on + strand, within PfGW456L13_4919at 5496.791 kb on + strand, within PfGW456L13_4919at 5496.792 kb on - strand, within PfGW456L13_4919at 5496.792 kb on - strand, within PfGW456L13_4919at 5496.792 kb on - strand, within PfGW456L13_4919

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
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5,494,386 + -0.6
5,494,387 - PfGW456L13_4917 0.66 -0.8
5,494,885 + -0.7
5,494,886 - +0.6
5,494,886 - -0.4
5,495,092 + -0.7
5,495,154 + +0.6
5,495,154 + +0.4
5,495,154 + -0.1
5,495,154 + +0.1
5,495,155 - +0.1
5,495,155 - -0.4
5,495,155 - +0.3
5,495,155 - +2.0
5,495,155 - -0.7
5,495,159 + -0.3
5,495,159 + -0.0
5,495,160 - +0.6
5,495,160 - +0.8
5,495,196 + -0.1
5,495,214 + -0.3
5,495,215 - +0.3
5,495,215 - +1.0
5,495,241 + -0.4
5,495,255 + -0.9
5,495,256 - -0.5
5,495,433 + PfGW456L13_4918 0.29 +1.5
5,495,433 + PfGW456L13_4918 0.29 +0.1
5,495,440 + PfGW456L13_4918 0.30 +0.2
5,495,441 - PfGW456L13_4918 0.30 +0.6
5,495,441 - PfGW456L13_4918 0.30 -0.5
5,495,582 - PfGW456L13_4918 0.50 +0.3
5,495,681 + PfGW456L13_4918 0.64 -0.1
5,495,682 - PfGW456L13_4918 0.65 +0.4
5,495,682 - PfGW456L13_4918 0.65 +0.0
5,495,912 - -0.3
5,495,930 - -0.2
5,495,932 + -1.6
5,495,932 + -0.4
5,495,932 + -0.1
5,495,933 - +0.1
5,495,933 - -1.2
5,495,933 - +0.3
5,495,933 - +0.8
5,496,045 - +0.5
5,496,080 - +1.3
5,496,185 + -0.7
5,496,186 - -1.0
5,496,206 + -0.7
5,496,207 - -0.2
5,496,207 - -0.6
5,496,207 - +0.3
5,496,332 + PfGW456L13_4919 0.12 +0.5
5,496,332 + PfGW456L13_4919 0.12 -0.1
5,496,333 - PfGW456L13_4919 0.12 -0.4
5,496,333 - PfGW456L13_4919 0.12 -0.9
5,496,333 - +2.3
5,496,368 + PfGW456L13_4919 0.14 +0.3
5,496,368 + PfGW456L13_4919 0.14 -0.6
5,496,368 + PfGW456L13_4919 0.14 +0.7
5,496,369 - PfGW456L13_4919 0.14 +0.5
5,496,440 + PfGW456L13_4919 0.19 +1.1
5,496,440 + PfGW456L13_4919 0.19 +0.1
5,496,440 + PfGW456L13_4919 0.19 +1.4
5,496,585 - PfGW456L13_4919 0.29 -0.3
5,496,791 + PfGW456L13_4919 0.44 +1.0
5,496,791 + PfGW456L13_4919 0.44 +0.3
5,496,791 + PfGW456L13_4919 0.44 -0.7
5,496,791 + PfGW456L13_4919 0.44 -0.2
5,496,791 + PfGW456L13_4919 0.44 -0.7
5,496,792 - PfGW456L13_4919 0.44 +0.5
5,496,792 - PfGW456L13_4919 0.44 -0.2
5,496,792 - PfGW456L13_4919 0.44 +0.7

Or see this region's nucleotide sequence