Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4781

Experiment: Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4779 and PfGW456L13_4780 are separated by 2 nucleotidesPfGW456L13_4780 and PfGW456L13_4781 are separated by 23 nucleotidesPfGW456L13_4781 and PfGW456L13_4782 are separated by 155 nucleotides PfGW456L13_4779 - acetyltransferase, GNAT family, at 5,330,482 to 5,330,979 _4779 PfGW456L13_4780 - L-lysine permease, at 5,330,982 to 5,331,620 _4780 PfGW456L13_4781 - Nudix hydrolase family protein PA3470, at 5,331,644 to 5,332,078 _4781 PfGW456L13_4782 - Amino acid transporters, at 5,332,234 to 5,333,559 _4782 Position (kb) 5331 5332 5333Strain fitness (log2 ratio) -2 -1 0 1at 5330.681 kb on + strand, within PfGW456L13_4779at 5330.717 kb on + strand, within PfGW456L13_4779at 5330.717 kb on + strand, within PfGW456L13_4779at 5330.717 kb on + strand, within PfGW456L13_4779at 5330.717 kb on + strand, within PfGW456L13_4779at 5330.717 kb on + strand, within PfGW456L13_4779at 5330.717 kb on + strand, within PfGW456L13_4779at 5330.717 kb on + strand, within PfGW456L13_4779at 5330.717 kb on + strand, within PfGW456L13_4779at 5330.717 kb on + strand, within PfGW456L13_4779at 5330.717 kb on + strand, within PfGW456L13_4779at 5330.718 kb on - strand, within PfGW456L13_4779at 5330.718 kb on - strand, within PfGW456L13_4779at 5330.718 kb on - strand, within PfGW456L13_4779at 5330.718 kb on - strand, within PfGW456L13_4779at 5330.718 kb on - strand, within PfGW456L13_4779at 5330.718 kb on - strand, within PfGW456L13_4779at 5330.915 kb on + strand, within PfGW456L13_4779at 5330.916 kb on - strand, within PfGW456L13_4779at 5330.916 kb on - strand, within PfGW456L13_4779at 5330.940 kb on - strandat 5331.033 kb on + strandat 5331.033 kb on + strandat 5331.034 kb on - strandat 5331.034 kb on - strandat 5331.049 kb on + strand, within PfGW456L13_4780at 5331.229 kb on + strand, within PfGW456L13_4780at 5331.229 kb on + strand, within PfGW456L13_4780at 5331.229 kb on + strand, within PfGW456L13_4780at 5331.229 kb on + strand, within PfGW456L13_4780at 5331.229 kb on + strand, within PfGW456L13_4780at 5331.230 kb on - strand, within PfGW456L13_4780at 5331.230 kb on - strand, within PfGW456L13_4780at 5331.373 kb on + strand, within PfGW456L13_4780at 5331.374 kb on - strand, within PfGW456L13_4780at 5331.374 kb on - strand, within PfGW456L13_4780at 5331.374 kb on - strand, within PfGW456L13_4780at 5331.374 kb on - strand, within PfGW456L13_4780at 5331.403 kb on + strand, within PfGW456L13_4780at 5331.403 kb on + strand, within PfGW456L13_4780at 5331.403 kb on + strand, within PfGW456L13_4780at 5331.404 kb on - strand, within PfGW456L13_4780at 5331.404 kb on - strand, within PfGW456L13_4780at 5331.404 kb on - strand, within PfGW456L13_4780at 5331.404 kb on - strand, within PfGW456L13_4780at 5331.541 kb on + strand, within PfGW456L13_4780at 5331.541 kb on + strand, within PfGW456L13_4780at 5331.541 kb on + strand, within PfGW456L13_4780at 5331.541 kb on + strand, within PfGW456L13_4780at 5331.541 kb on + strand, within PfGW456L13_4780at 5331.541 kb on + strand, within PfGW456L13_4780at 5331.541 kb on + strand, within PfGW456L13_4780at 5331.541 kb on + strand, within PfGW456L13_4780at 5331.541 kb on + strand, within PfGW456L13_4780at 5331.542 kb on - strand, within PfGW456L13_4780at 5331.542 kb on - strand, within PfGW456L13_4780at 5331.542 kb on - strand, within PfGW456L13_4780at 5331.542 kb on - strand, within PfGW456L13_4780at 5331.787 kb on + strand, within PfGW456L13_4781at 5331.787 kb on + strand, within PfGW456L13_4781at 5331.813 kb on - strand, within PfGW456L13_4781at 5332.078 kb on + strandat 5332.078 kb on + strandat 5332.078 kb on + strandat 5332.078 kb on + strandat 5332.078 kb on + strandat 5332.079 kb on - strandat 5332.079 kb on - strandat 5332.079 kb on - strandat 5332.129 kb on + strandat 5332.129 kb on + strandat 5332.130 kb on - strandat 5332.130 kb on - strandat 5332.130 kb on - strandat 5332.223 kb on + strandat 5332.224 kb on - strandat 5332.236 kb on - strandat 5332.301 kb on + strandat 5332.301 kb on + strandat 5332.302 kb on - strandat 5332.338 kb on - strandat 5332.338 kb on - strandat 5332.659 kb on - strand, within PfGW456L13_4782at 5332.776 kb on - strand, within PfGW456L13_4782at 5332.833 kb on - strand, within PfGW456L13_4782at 5332.833 kb on - strand, within PfGW456L13_4782at 5332.959 kb on - strand, within PfGW456L13_4782at 5332.959 kb on - strand, within PfGW456L13_4782at 5333.060 kb on + strand, within PfGW456L13_4782at 5333.060 kb on + strand, within PfGW456L13_4782at 5333.060 kb on + strand, within PfGW456L13_4782at 5333.061 kb on - strand, within PfGW456L13_4782at 5333.061 kb on - strand, within PfGW456L13_4782

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
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5,330,681 + PfGW456L13_4779 0.40 -0.8
5,330,717 + PfGW456L13_4779 0.47 -0.1
5,330,717 + PfGW456L13_4779 0.47 +0.3
5,330,717 + PfGW456L13_4779 0.47 -0.4
5,330,717 + PfGW456L13_4779 0.47 -0.2
5,330,717 + PfGW456L13_4779 0.47 +0.5
5,330,717 + PfGW456L13_4779 0.47 -0.5
5,330,717 + PfGW456L13_4779 0.47 -0.3
5,330,717 + PfGW456L13_4779 0.47 -0.1
5,330,717 + PfGW456L13_4779 0.47 +0.3
5,330,717 + PfGW456L13_4779 0.47 +0.2
5,330,718 - PfGW456L13_4779 0.47 -0.6
5,330,718 - PfGW456L13_4779 0.47 +0.8
5,330,718 - PfGW456L13_4779 0.47 +0.1
5,330,718 - PfGW456L13_4779 0.47 +0.3
5,330,718 - PfGW456L13_4779 0.47 -1.3
5,330,718 - PfGW456L13_4779 0.47 -0.6
5,330,915 + PfGW456L13_4779 0.87 +0.9
5,330,916 - PfGW456L13_4779 0.87 +1.3
5,330,916 - PfGW456L13_4779 0.87 -0.2
5,330,940 - +0.3
5,331,033 + -0.5
5,331,033 + -0.7
5,331,034 - +0.4
5,331,034 - +0.3
5,331,049 + PfGW456L13_4780 0.10 +0.6
5,331,229 + PfGW456L13_4780 0.39 +0.3
5,331,229 + PfGW456L13_4780 0.39 +0.2
5,331,229 + PfGW456L13_4780 0.39 -0.9
5,331,229 + PfGW456L13_4780 0.39 +0.5
5,331,229 + PfGW456L13_4780 0.39 -0.2
5,331,230 - PfGW456L13_4780 0.39 -0.0
5,331,230 - PfGW456L13_4780 0.39 +0.4
5,331,373 + PfGW456L13_4780 0.61 -1.0
5,331,374 - PfGW456L13_4780 0.61 -0.0
5,331,374 - PfGW456L13_4780 0.61 +1.0
5,331,374 - PfGW456L13_4780 0.61 +0.4
5,331,374 - PfGW456L13_4780 0.61 +0.3
5,331,403 + PfGW456L13_4780 0.66 +0.4
5,331,403 + PfGW456L13_4780 0.66 +1.7
5,331,403 + PfGW456L13_4780 0.66 -2.7
5,331,404 - PfGW456L13_4780 0.66 -0.1
5,331,404 - PfGW456L13_4780 0.66 +0.3
5,331,404 - PfGW456L13_4780 0.66 -0.3
5,331,404 - PfGW456L13_4780 0.66 +0.9
5,331,541 + PfGW456L13_4780 0.87 +0.1
5,331,541 + PfGW456L13_4780 0.87 -0.8
5,331,541 + PfGW456L13_4780 0.87 +0.3
5,331,541 + PfGW456L13_4780 0.87 +0.6
5,331,541 + PfGW456L13_4780 0.87 -1.5
5,331,541 + PfGW456L13_4780 0.87 -0.8
5,331,541 + PfGW456L13_4780 0.87 +0.0
5,331,541 + PfGW456L13_4780 0.87 -0.8
5,331,541 + PfGW456L13_4780 0.87 +0.1
5,331,542 - PfGW456L13_4780 0.88 +0.9
5,331,542 - PfGW456L13_4780 0.88 +0.5
5,331,542 - PfGW456L13_4780 0.88 +0.2
5,331,542 - PfGW456L13_4780 0.88 -0.9
5,331,787 + PfGW456L13_4781 0.33 +0.9
5,331,787 + PfGW456L13_4781 0.33 +0.9
5,331,813 - PfGW456L13_4781 0.39 +0.6
5,332,078 + -1.0
5,332,078 + -0.4
5,332,078 + +0.1
5,332,078 + +0.9
5,332,078 + +1.3
5,332,079 - -2.1
5,332,079 - +0.4
5,332,079 - +0.6
5,332,129 + +0.1
5,332,129 + +0.1
5,332,130 - -0.3
5,332,130 - -0.7
5,332,130 - +0.3
5,332,223 + -1.1
5,332,224 - -1.2
5,332,236 - +0.2
5,332,301 + -0.4
5,332,301 + +0.7
5,332,302 - +0.2
5,332,338 - -1.5
5,332,338 - +0.7
5,332,659 - PfGW456L13_4782 0.32 +0.8
5,332,776 - PfGW456L13_4782 0.41 -0.8
5,332,833 - PfGW456L13_4782 0.45 +0.6
5,332,833 - PfGW456L13_4782 0.45 +0.5
5,332,959 - PfGW456L13_4782 0.55 -0.1
5,332,959 - PfGW456L13_4782 0.55 +0.7
5,333,060 + PfGW456L13_4782 0.62 +0.5
5,333,060 + PfGW456L13_4782 0.62 +0.3
5,333,060 + PfGW456L13_4782 0.62 +0.2
5,333,061 - PfGW456L13_4782 0.62 +0.3
5,333,061 - PfGW456L13_4782 0.62 -0.6

Or see this region's nucleotide sequence