Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4742

Experiment: Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4740 and PfGW456L13_4741 are separated by 202 nucleotidesPfGW456L13_4741 and PfGW456L13_4742 are separated by 315 nucleotidesPfGW456L13_4742 and PfGW456L13_4743 are separated by 45 nucleotidesPfGW456L13_4743 and PfGW456L13_4744 are separated by 138 nucleotides PfGW456L13_4740 - Phosphoenolpyruvate carboxylase (EC 4.1.1.31), at 5,282,424 to 5,285,054 _4740 PfGW456L13_4741 - FIG00958830: hypothetical protein, at 5,285,257 to 5,285,601 _4741 PfGW456L13_4742 - FIG00953405: hypothetical protein, at 5,285,917 to 5,286,330 _4742 PfGW456L13_4743 - Outer membrane lipoprotein omp16 precursor, at 5,286,376 to 5,287,173 _4743 PfGW456L13_4744 - Putative lipoprotein in cluster with COG2110, at 5,287,312 to 5,287,641 _4744 Position (kb) 5285 5286 5287Strain fitness (log2 ratio) -2 -1 0 1 2at 5284.975 kb on + strandat 5284.975 kb on + strandat 5284.975 kb on + strandat 5284.976 kb on - strandat 5285.121 kb on + strandat 5285.121 kb on + strandat 5285.121 kb on + strandat 5285.121 kb on + strandat 5285.121 kb on + strandat 5285.122 kb on - strandat 5285.122 kb on - strandat 5285.122 kb on - strandat 5285.122 kb on - strandat 5285.122 kb on - strandat 5285.146 kb on + strandat 5285.146 kb on + strandat 5285.146 kb on + strandat 5285.146 kb on + strandat 5285.147 kb on - strandat 5285.166 kb on + strandat 5285.166 kb on + strandat 5285.179 kb on - strandat 5285.179 kb on - strandat 5285.179 kb on - strandat 5285.185 kb on + strandat 5285.185 kb on + strandat 5285.186 kb on - strandat 5285.186 kb on - strandat 5285.257 kb on - strandat 5285.381 kb on - strand, within PfGW456L13_4741at 5285.381 kb on - strand, within PfGW456L13_4741at 5285.381 kb on - strand, within PfGW456L13_4741at 5285.381 kb on - strand, within PfGW456L13_4741at 5285.381 kb on - strand, within PfGW456L13_4741at 5285.381 kb on - strand, within PfGW456L13_4741at 5285.458 kb on + strand, within PfGW456L13_4741at 5285.605 kb on - strandat 5285.605 kb on - strandat 5285.605 kb on - strandat 5285.623 kb on + strandat 5285.624 kb on - strandat 5285.624 kb on - strandat 5285.624 kb on - strandat 5285.624 kb on - strandat 5285.624 kb on - strandat 5285.679 kb on + strandat 5285.691 kb on - strandat 5285.691 kb on - strandat 5285.728 kb on - strandat 5285.728 kb on - strandat 5285.728 kb on - strandat 5285.728 kb on - strandat 5285.736 kb on + strandat 5285.736 kb on + strandat 5285.736 kb on + strandat 5285.778 kb on - strandat 5285.778 kb on - strandat 5285.778 kb on - strandat 5285.820 kb on + strandat 5285.820 kb on + strandat 5285.821 kb on - strandat 5285.821 kb on - strandat 5285.821 kb on - strandat 5286.178 kb on + strand, within PfGW456L13_4742at 5286.178 kb on + strand, within PfGW456L13_4742at 5286.178 kb on + strand, within PfGW456L13_4742at 5286.328 kb on + strandat 5286.481 kb on + strand, within PfGW456L13_4743at 5286.481 kb on + strand, within PfGW456L13_4743at 5286.574 kb on + strand, within PfGW456L13_4743at 5286.575 kb on - strand, within PfGW456L13_4743at 5286.575 kb on - strand, within PfGW456L13_4743at 5286.575 kb on - strand, within PfGW456L13_4743at 5286.616 kb on + strand, within PfGW456L13_4743at 5286.617 kb on - strand, within PfGW456L13_4743at 5286.617 kb on - strand, within PfGW456L13_4743at 5286.617 kb on - strand, within PfGW456L13_4743at 5286.877 kb on + strand, within PfGW456L13_4743at 5286.877 kb on + strand, within PfGW456L13_4743at 5286.877 kb on + strand, within PfGW456L13_4743at 5286.877 kb on + strand, within PfGW456L13_4743at 5286.878 kb on - strand, within PfGW456L13_4743at 5286.878 kb on - strand, within PfGW456L13_4743at 5286.878 kb on - strand, within PfGW456L13_4743at 5286.882 kb on - strand, within PfGW456L13_4743at 5286.882 kb on - strand, within PfGW456L13_4743at 5286.919 kb on + strand, within PfGW456L13_4743at 5286.919 kb on + strand, within PfGW456L13_4743at 5287.023 kb on + strand, within PfGW456L13_4743at 5287.051 kb on + strand, within PfGW456L13_4743at 5287.126 kb on - strandat 5287.156 kb on - strandat 5287.162 kb on + strandat 5287.162 kb on + strandat 5287.162 kb on + strandat 5287.162 kb on + strandat 5287.163 kb on - strandat 5287.163 kb on - strandat 5287.163 kb on - strandat 5287.163 kb on - strandat 5287.163 kb on - strandat 5287.171 kb on + strandat 5287.224 kb on + strandat 5287.224 kb on + strandat 5287.225 kb on - strandat 5287.250 kb on + strandat 5287.250 kb on + strandat 5287.250 kb on + strandat 5287.250 kb on + strandat 5287.250 kb on + strandat 5287.250 kb on + strandat 5287.251 kb on - strandat 5287.251 kb on - strandat 5287.251 kb on - strandat 5287.292 kb on + strandat 5287.292 kb on + strandat 5287.293 kb on - strandat 5287.293 kb on - strandat 5287.313 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
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5,284,975 + -0.1
5,284,975 + +1.9
5,284,975 + -0.5
5,284,976 - -0.4
5,285,121 + +0.9
5,285,121 + -1.0
5,285,121 + -0.4
5,285,121 + +0.9
5,285,121 + +1.7
5,285,122 - +1.3
5,285,122 - -2.6
5,285,122 - -0.0
5,285,122 - +0.6
5,285,122 - +0.2
5,285,146 + -0.6
5,285,146 + -0.4
5,285,146 + +0.4
5,285,146 + +0.1
5,285,147 - +0.0
5,285,166 + +0.8
5,285,166 + +0.2
5,285,179 - -0.5
5,285,179 - +1.5
5,285,179 - +0.2
5,285,185 + -0.6
5,285,185 + -0.1
5,285,186 - +0.4
5,285,186 - +0.2
5,285,257 - +0.6
5,285,381 - PfGW456L13_4741 0.36 -0.6
5,285,381 - PfGW456L13_4741 0.36 -1.3
5,285,381 - PfGW456L13_4741 0.36 +0.9
5,285,381 - PfGW456L13_4741 0.36 +0.2
5,285,381 - PfGW456L13_4741 0.36 -0.6
5,285,381 - PfGW456L13_4741 0.36 +0.3
5,285,458 + PfGW456L13_4741 0.58 +0.4
5,285,605 - -0.4
5,285,605 - +0.1
5,285,605 - +1.2
5,285,623 + +0.1
5,285,624 - -0.0
5,285,624 - -0.2
5,285,624 - +0.2
5,285,624 - +0.8
5,285,624 - -0.3
5,285,679 + +0.0
5,285,691 - -0.6
5,285,691 - +0.3
5,285,728 - -0.6
5,285,728 - +0.7
5,285,728 - +0.1
5,285,728 - -0.6
5,285,736 + +0.2
5,285,736 + -0.7
5,285,736 + -0.4
5,285,778 - +0.2
5,285,778 - +0.1
5,285,778 - +0.2
5,285,820 + -0.1
5,285,820 + -0.1
5,285,821 - +0.4
5,285,821 - -0.1
5,285,821 - +0.1
5,286,178 + PfGW456L13_4742 0.63 +0.5
5,286,178 + PfGW456L13_4742 0.63 +1.1
5,286,178 + PfGW456L13_4742 0.63 +0.7
5,286,328 + +0.0
5,286,481 + PfGW456L13_4743 0.13 +0.7
5,286,481 + PfGW456L13_4743 0.13 -0.5
5,286,574 + PfGW456L13_4743 0.25 +0.4
5,286,575 - PfGW456L13_4743 0.25 -0.3
5,286,575 - PfGW456L13_4743 0.25 +0.6
5,286,575 - PfGW456L13_4743 0.25 -0.7
5,286,616 + PfGW456L13_4743 0.30 +0.2
5,286,617 - PfGW456L13_4743 0.30 +0.0
5,286,617 - PfGW456L13_4743 0.30 -0.2
5,286,617 - PfGW456L13_4743 0.30 +0.5
5,286,877 + PfGW456L13_4743 0.63 +0.1
5,286,877 + PfGW456L13_4743 0.63 +0.5
5,286,877 + PfGW456L13_4743 0.63 -1.2
5,286,877 + PfGW456L13_4743 0.63 -0.4
5,286,878 - PfGW456L13_4743 0.63 +0.5
5,286,878 - PfGW456L13_4743 0.63 -0.9
5,286,878 - PfGW456L13_4743 0.63 +0.7
5,286,882 - PfGW456L13_4743 0.63 +0.3
5,286,882 - PfGW456L13_4743 0.63 -0.2
5,286,919 + PfGW456L13_4743 0.68 -0.5
5,286,919 + PfGW456L13_4743 0.68 -0.3
5,287,023 + PfGW456L13_4743 0.81 -0.3
5,287,051 + PfGW456L13_4743 0.85 -0.6
5,287,126 - +1.1
5,287,156 - -0.5
5,287,162 + +0.4
5,287,162 + -1.2
5,287,162 + +0.8
5,287,162 + +0.8
5,287,163 - +1.3
5,287,163 - +0.8
5,287,163 - -0.4
5,287,163 - -0.1
5,287,163 - +0.1
5,287,171 + -0.1
5,287,224 + +0.6
5,287,224 + -0.0
5,287,225 - +0.4
5,287,250 + +0.8
5,287,250 + -0.3
5,287,250 + +0.2
5,287,250 + +0.6
5,287,250 + -0.7
5,287,250 + -0.1
5,287,251 - -0.9
5,287,251 - -0.2
5,287,251 - +0.5
5,287,292 + +0.1
5,287,292 + -0.6
5,287,293 - +0.2
5,287,293 - -0.2
5,287,313 + -0.2

Or see this region's nucleotide sequence