Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_468

Experiment: Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_467 and PfGW456L13_468 are separated by 55 nucleotidesPfGW456L13_468 and PfGW456L13_469 are separated by 290 nucleotidesPfGW456L13_469 and PfGW456L13_470 are separated by 1 nucleotides PfGW456L13_467 - Functional role page for Anaerobic nitric oxide reductase transcription regulator NorR, at 536,020 to 536,946 _467 PfGW456L13_468 - FIG00953394: hypothetical protein, at 537,002 to 537,583 _468 PfGW456L13_469 - Biopolymer transport protein ExbD/TolR, at 537,874 to 538,275 _469 PfGW456L13_470 - MotA/TolQ/ExbB proton channel family protein, at 538,277 to 539,002 _470 Position (kb) 537 538Strain fitness (log2 ratio) -2 -1 0 1at 536.021 kb on + strandat 536.022 kb on - strandat 536.024 kb on - strandat 536.025 kb on + strandat 536.095 kb on + strandat 536.108 kb on - strandat 536.173 kb on - strand, within PfGW456L13_467at 536.300 kb on + strand, within PfGW456L13_467at 536.300 kb on + strand, within PfGW456L13_467at 536.301 kb on - strand, within PfGW456L13_467at 536.301 kb on - strand, within PfGW456L13_467at 536.301 kb on - strand, within PfGW456L13_467at 536.301 kb on - strand, within PfGW456L13_467at 536.301 kb on - strand, within PfGW456L13_467at 536.315 kb on + strand, within PfGW456L13_467at 536.315 kb on + strand, within PfGW456L13_467at 536.393 kb on + strand, within PfGW456L13_467at 536.394 kb on - strand, within PfGW456L13_467at 536.576 kb on + strand, within PfGW456L13_467at 536.576 kb on + strand, within PfGW456L13_467at 536.576 kb on + strand, within PfGW456L13_467at 536.576 kb on + strand, within PfGW456L13_467at 536.576 kb on + strand, within PfGW456L13_467at 536.576 kb on + strand, within PfGW456L13_467at 536.576 kb on + strand, within PfGW456L13_467at 536.576 kb on + strand, within PfGW456L13_467at 536.576 kb on + strand, within PfGW456L13_467at 536.576 kb on + strand, within PfGW456L13_467at 536.577 kb on - strand, within PfGW456L13_467at 536.577 kb on - strand, within PfGW456L13_467at 536.577 kb on - strand, within PfGW456L13_467at 536.577 kb on - strand, within PfGW456L13_467at 536.577 kb on - strand, within PfGW456L13_467at 536.577 kb on - strand, within PfGW456L13_467at 536.577 kb on - strand, within PfGW456L13_467at 536.578 kb on + strand, within PfGW456L13_467at 536.578 kb on + strand, within PfGW456L13_467at 536.636 kb on + strand, within PfGW456L13_467at 536.637 kb on - strand, within PfGW456L13_467at 536.637 kb on - strand, within PfGW456L13_467at 536.676 kb on - strand, within PfGW456L13_467at 536.700 kb on + strand, within PfGW456L13_467at 536.833 kb on + strand, within PfGW456L13_467at 536.833 kb on + strand, within PfGW456L13_467at 536.833 kb on + strand, within PfGW456L13_467at 536.833 kb on + strand, within PfGW456L13_467at 536.833 kb on + strand, within PfGW456L13_467at 536.833 kb on + strand, within PfGW456L13_467at 536.834 kb on - strand, within PfGW456L13_467at 536.834 kb on - strand, within PfGW456L13_467at 536.834 kb on - strand, within PfGW456L13_467at 536.991 kb on - strandat 536.991 kb on - strandat 537.054 kb on + strandat 537.055 kb on - strandat 537.055 kb on - strandat 537.142 kb on + strand, within PfGW456L13_468at 537.142 kb on + strand, within PfGW456L13_468at 537.623 kb on - strandat 537.624 kb on + strandat 537.624 kb on + strandat 537.624 kb on + strandat 537.624 kb on + strandat 537.625 kb on - strandat 537.625 kb on - strandat 537.625 kb on - strandat 537.625 kb on - strandat 537.625 kb on - strandat 537.625 kb on - strandat 537.625 kb on - strandat 537.625 kb on - strandat 537.638 kb on - strandat 537.675 kb on + strandat 537.822 kb on - strandat 537.885 kb on + strandat 537.903 kb on + strandat 537.903 kb on + strandat 537.951 kb on - strand, within PfGW456L13_469at 538.042 kb on + strand, within PfGW456L13_469at 538.042 kb on + strand, within PfGW456L13_469at 538.043 kb on - strand, within PfGW456L13_469at 538.043 kb on - strand, within PfGW456L13_469at 538.059 kb on + strand, within PfGW456L13_469at 538.060 kb on - strand, within PfGW456L13_469at 538.377 kb on + strand, within PfGW456L13_470at 538.377 kb on + strand, within PfGW456L13_470at 538.377 kb on + strand, within PfGW456L13_470at 538.377 kb on + strand, within PfGW456L13_470at 538.377 kb on + strand, within PfGW456L13_470at 538.377 kb on + strand, within PfGW456L13_470at 538.377 kb on + strand, within PfGW456L13_470at 538.378 kb on - strand, within PfGW456L13_470at 538.378 kb on - strand, within PfGW456L13_470at 538.378 kb on - strand, within PfGW456L13_470at 538.437 kb on + strand, within PfGW456L13_470at 538.443 kb on + strand, within PfGW456L13_470at 538.443 kb on + strand, within PfGW456L13_470at 538.444 kb on - strand, within PfGW456L13_470at 538.444 kb on - strand, within PfGW456L13_470at 538.444 kb on - strand, within PfGW456L13_470at 538.444 kb on - strand, within PfGW456L13_470

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
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536,021 + +0.3
536,022 - -0.3
536,024 - -0.8
536,025 + -0.4
536,095 + -0.8
536,108 - +0.3
536,173 - PfGW456L13_467 0.17 +0.1
536,300 + PfGW456L13_467 0.30 -0.2
536,300 + PfGW456L13_467 0.30 -0.3
536,301 - PfGW456L13_467 0.30 +0.9
536,301 - PfGW456L13_467 0.30 +0.6
536,301 - PfGW456L13_467 0.30 +0.4
536,301 - PfGW456L13_467 0.30 +0.3
536,301 - PfGW456L13_467 0.30 -0.2
536,315 + PfGW456L13_467 0.32 +0.3
536,315 + PfGW456L13_467 0.32 +0.2
536,393 + PfGW456L13_467 0.40 -0.6
536,394 - PfGW456L13_467 0.40 +0.7
536,576 + PfGW456L13_467 0.60 -0.2
536,576 + PfGW456L13_467 0.60 +0.7
536,576 + PfGW456L13_467 0.60 +0.3
536,576 + PfGW456L13_467 0.60 +0.1
536,576 + PfGW456L13_467 0.60 +0.3
536,576 + PfGW456L13_467 0.60 +0.6
536,576 + PfGW456L13_467 0.60 +0.5
536,576 + PfGW456L13_467 0.60 -0.5
536,576 + PfGW456L13_467 0.60 -1.1
536,576 + PfGW456L13_467 0.60 -0.0
536,577 - PfGW456L13_467 0.60 -0.0
536,577 - PfGW456L13_467 0.60 -0.0
536,577 - PfGW456L13_467 0.60 -0.4
536,577 - PfGW456L13_467 0.60 +0.2
536,577 - PfGW456L13_467 0.60 +0.6
536,577 - PfGW456L13_467 0.60 -0.6
536,577 - PfGW456L13_467 0.60 -0.5
536,578 + PfGW456L13_467 0.60 -0.4
536,578 + PfGW456L13_467 0.60 -0.0
536,636 + PfGW456L13_467 0.66 -0.5
536,637 - PfGW456L13_467 0.67 -0.8
536,637 - PfGW456L13_467 0.67 -0.6
536,676 - PfGW456L13_467 0.71 +0.5
536,700 + PfGW456L13_467 0.73 -1.0
536,833 + PfGW456L13_467 0.88 -0.3
536,833 + PfGW456L13_467 0.88 -0.0
536,833 + PfGW456L13_467 0.88 +0.3
536,833 + PfGW456L13_467 0.88 +0.4
536,833 + PfGW456L13_467 0.88 +0.4
536,833 + PfGW456L13_467 0.88 -0.2
536,834 - PfGW456L13_467 0.88 -0.3
536,834 - PfGW456L13_467 0.88 -1.0
536,834 - PfGW456L13_467 0.88 -0.1
536,991 - +1.0
536,991 - +1.1
537,054 + -0.3
537,055 - +0.7
537,055 - +1.7
537,142 + PfGW456L13_468 0.24 +0.1
537,142 + PfGW456L13_468 0.24 +1.6
537,623 - +0.9
537,624 + -0.2
537,624 + +0.4
537,624 + -0.1
537,624 + -0.4
537,625 - +0.3
537,625 - +0.1
537,625 - -0.3
537,625 - +0.6
537,625 - +0.7
537,625 - +0.8
537,625 - -0.2
537,625 - +1.2
537,638 - -0.1
537,675 + -0.2
537,822 - +0.3
537,885 + -0.1
537,903 + +0.5
537,903 + +0.1
537,951 - PfGW456L13_469 0.19 -0.1
538,042 + PfGW456L13_469 0.42 +0.3
538,042 + PfGW456L13_469 0.42 -0.4
538,043 - PfGW456L13_469 0.42 -1.1
538,043 - PfGW456L13_469 0.42 -1.1
538,059 + PfGW456L13_469 0.46 +0.5
538,060 - PfGW456L13_469 0.46 +0.3
538,377 + PfGW456L13_470 0.14 -0.1
538,377 + PfGW456L13_470 0.14 +0.3
538,377 + PfGW456L13_470 0.14 +0.2
538,377 + PfGW456L13_470 0.14 +0.0
538,377 + PfGW456L13_470 0.14 +0.0
538,377 + PfGW456L13_470 0.14 +0.8
538,377 + PfGW456L13_470 0.14 +0.1
538,378 - PfGW456L13_470 0.14 +0.3
538,378 - PfGW456L13_470 0.14 -0.4
538,378 - PfGW456L13_470 0.14 -2.1
538,437 + PfGW456L13_470 0.22 -0.3
538,443 + PfGW456L13_470 0.23 -0.3
538,443 + PfGW456L13_470 0.23 +0.3
538,444 - PfGW456L13_470 0.23 +0.8
538,444 - PfGW456L13_470 0.23 +0.0
538,444 - PfGW456L13_470 0.23 +0.8
538,444 - PfGW456L13_470 0.23 +1.6

Or see this region's nucleotide sequence