Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4570

Experiment: Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4568 and PfGW456L13_4569 are separated by 1 nucleotidesPfGW456L13_4569 and PfGW456L13_4570 are separated by 271 nucleotidesPfGW456L13_4570 and PfGW456L13_4571 overlap by 4 nucleotides PfGW456L13_4568 - Cardiolipin synthetase (EC 2.7.8.-), at 5,097,882 to 5,099,039 _4568 PfGW456L13_4569 - FIG00956006: hypothetical protein, at 5,099,041 to 5,099,631 _4569 PfGW456L13_4570 - FIG00953409: hypothetical protein, at 5,099,903 to 5,100,226 _4570 PfGW456L13_4571 - Beta-lactamase class C and other penicillin binding proteins, at 5,100,223 to 5,101,317 _4571 Position (kb) 5099 5100 5101Strain fitness (log2 ratio) -2 -1 0 1at 5098.912 kb on + strand, within PfGW456L13_4568at 5098.912 kb on + strand, within PfGW456L13_4568at 5098.912 kb on + strand, within PfGW456L13_4568at 5098.913 kb on - strand, within PfGW456L13_4568at 5098.913 kb on - strand, within PfGW456L13_4568at 5098.913 kb on - strand, within PfGW456L13_4568at 5099.091 kb on + strandat 5099.091 kb on + strandat 5099.091 kb on + strandat 5099.091 kb on + strandat 5099.091 kb on + strandat 5099.092 kb on - strandat 5099.099 kb on - strandat 5099.231 kb on + strand, within PfGW456L13_4569at 5099.231 kb on + strand, within PfGW456L13_4569at 5099.231 kb on + strand, within PfGW456L13_4569at 5099.232 kb on - strand, within PfGW456L13_4569at 5099.323 kb on + strand, within PfGW456L13_4569at 5099.323 kb on + strand, within PfGW456L13_4569at 5099.323 kb on + strand, within PfGW456L13_4569at 5099.323 kb on + strand, within PfGW456L13_4569at 5099.324 kb on - strand, within PfGW456L13_4569at 5099.324 kb on - strand, within PfGW456L13_4569at 5099.324 kb on - strand, within PfGW456L13_4569at 5099.631 kb on + strandat 5099.631 kb on + strandat 5099.631 kb on + strandat 5099.632 kb on - strandat 5099.632 kb on - strandat 5099.632 kb on - strandat 5099.632 kb on - strandat 5099.650 kb on + strandat 5099.650 kb on + strandat 5099.650 kb on + strandat 5099.650 kb on + strandat 5099.651 kb on - strandat 5099.651 kb on - strandat 5099.669 kb on - strandat 5099.669 kb on - strandat 5099.669 kb on - strandat 5099.797 kb on + strandat 5099.797 kb on + strandat 5099.797 kb on + strandat 5099.797 kb on + strandat 5099.797 kb on + strandat 5099.798 kb on - strandat 5099.798 kb on - strandat 5099.798 kb on - strandat 5099.895 kb on + strandat 5099.895 kb on + strandat 5100.036 kb on + strand, within PfGW456L13_4570at 5100.036 kb on + strand, within PfGW456L13_4570at 5100.036 kb on + strand, within PfGW456L13_4570at 5100.036 kb on + strand, within PfGW456L13_4570at 5100.036 kb on + strand, within PfGW456L13_4570at 5100.036 kb on + strand, within PfGW456L13_4570at 5100.037 kb on - strand, within PfGW456L13_4570at 5100.037 kb on - strand, within PfGW456L13_4570at 5100.048 kb on + strand, within PfGW456L13_4570at 5100.049 kb on - strand, within PfGW456L13_4570at 5100.073 kb on - strand, within PfGW456L13_4570at 5100.073 kb on - strand, within PfGW456L13_4570at 5100.087 kb on + strand, within PfGW456L13_4570at 5100.087 kb on + strand, within PfGW456L13_4570at 5100.087 kb on + strand, within PfGW456L13_4570at 5100.087 kb on + strand, within PfGW456L13_4570at 5100.088 kb on - strand, within PfGW456L13_4570at 5100.088 kb on - strand, within PfGW456L13_4570at 5100.088 kb on - strand, within PfGW456L13_4570at 5100.102 kb on + strand, within PfGW456L13_4570at 5100.103 kb on - strand, within PfGW456L13_4570at 5100.284 kb on + strandat 5100.344 kb on + strand, within PfGW456L13_4571at 5100.344 kb on + strand, within PfGW456L13_4571at 5100.344 kb on + strand, within PfGW456L13_4571at 5100.344 kb on + strand, within PfGW456L13_4571at 5100.344 kb on + strand, within PfGW456L13_4571at 5100.344 kb on + strand, within PfGW456L13_4571at 5100.344 kb on + strand, within PfGW456L13_4571at 5100.344 kb on + strand, within PfGW456L13_4571at 5100.345 kb on - strand, within PfGW456L13_4571at 5100.345 kb on - strand, within PfGW456L13_4571at 5100.345 kb on - strand, within PfGW456L13_4571at 5100.345 kb on - strand, within PfGW456L13_4571at 5100.345 kb on - strand, within PfGW456L13_4571at 5100.345 kb on - strand, within PfGW456L13_4571at 5100.345 kb on - strand, within PfGW456L13_4571at 5100.345 kb on - strand, within PfGW456L13_4571at 5100.479 kb on + strand, within PfGW456L13_4571at 5100.479 kb on + strand, within PfGW456L13_4571at 5100.599 kb on + strand, within PfGW456L13_4571at 5100.599 kb on + strand, within PfGW456L13_4571at 5100.600 kb on - strand, within PfGW456L13_4571at 5100.600 kb on - strand, within PfGW456L13_4571at 5100.600 kb on - strand, within PfGW456L13_4571at 5100.605 kb on + strand, within PfGW456L13_4571at 5100.605 kb on + strand, within PfGW456L13_4571at 5100.605 kb on + strand, within PfGW456L13_4571at 5100.842 kb on + strand, within PfGW456L13_4571at 5100.842 kb on + strand, within PfGW456L13_4571at 5100.842 kb on + strand, within PfGW456L13_4571at 5100.843 kb on - strand, within PfGW456L13_4571at 5100.843 kb on - strand, within PfGW456L13_4571at 5100.843 kb on - strand, within PfGW456L13_4571at 5100.843 kb on - strand, within PfGW456L13_4571at 5100.843 kb on - strand, within PfGW456L13_4571at 5100.879 kb on - strand, within PfGW456L13_4571at 5100.879 kb on - strand, within PfGW456L13_4571at 5100.879 kb on - strand, within PfGW456L13_4571at 5100.884 kb on + strand, within PfGW456L13_4571at 5100.885 kb on - strand, within PfGW456L13_4571at 5100.885 kb on - strand, within PfGW456L13_4571at 5100.948 kb on - strand, within PfGW456L13_4571at 5100.965 kb on + strand, within PfGW456L13_4571at 5100.966 kb on - strand, within PfGW456L13_4571at 5101.010 kb on + strand, within PfGW456L13_4571at 5101.103 kb on + strand, within PfGW456L13_4571at 5101.103 kb on + strand, within PfGW456L13_4571at 5101.104 kb on - strand, within PfGW456L13_4571at 5101.104 kb on - strand, within PfGW456L13_4571at 5101.188 kb on - strand, within PfGW456L13_4571at 5101.188 kb on - strand, within PfGW456L13_4571at 5101.188 kb on - strand, within PfGW456L13_4571

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
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5,098,912 + PfGW456L13_4568 0.89 -0.3
5,098,912 + PfGW456L13_4568 0.89 +0.5
5,098,912 + PfGW456L13_4568 0.89 -1.0
5,098,913 - PfGW456L13_4568 0.89 -0.1
5,098,913 - PfGW456L13_4568 0.89 -0.1
5,098,913 - PfGW456L13_4568 0.89 +0.5
5,099,091 + +0.1
5,099,091 + +0.5
5,099,091 + +0.6
5,099,091 + -2.6
5,099,091 + -0.9
5,099,092 - +0.1
5,099,099 - +0.1
5,099,231 + PfGW456L13_4569 0.32 +0.2
5,099,231 + PfGW456L13_4569 0.32 +0.2
5,099,231 + PfGW456L13_4569 0.32 -1.1
5,099,232 - PfGW456L13_4569 0.32 +0.0
5,099,323 + PfGW456L13_4569 0.48 +0.5
5,099,323 + PfGW456L13_4569 0.48 +0.2
5,099,323 + PfGW456L13_4569 0.48 -0.4
5,099,323 + PfGW456L13_4569 0.48 +1.0
5,099,324 - PfGW456L13_4569 0.48 -0.9
5,099,324 - PfGW456L13_4569 0.48 -0.5
5,099,324 - PfGW456L13_4569 0.48 -0.2
5,099,631 + +0.5
5,099,631 + -0.7
5,099,631 + -0.6
5,099,632 - +1.1
5,099,632 - +0.2
5,099,632 - -0.4
5,099,632 - -1.0
5,099,650 + -0.4
5,099,650 + +0.6
5,099,650 + +0.3
5,099,650 + +0.9
5,099,651 - +1.4
5,099,651 - +0.7
5,099,669 - +1.1
5,099,669 - +1.3
5,099,669 - +0.1
5,099,797 + +0.4
5,099,797 + +0.1
5,099,797 + -0.8
5,099,797 + -0.5
5,099,797 + -0.7
5,099,798 - +0.6
5,099,798 - -0.1
5,099,798 - -1.3
5,099,895 + +0.2
5,099,895 + -0.6
5,100,036 + PfGW456L13_4570 0.41 -0.6
5,100,036 + PfGW456L13_4570 0.41 +0.7
5,100,036 + PfGW456L13_4570 0.41 -0.0
5,100,036 + PfGW456L13_4570 0.41 -0.9
5,100,036 + PfGW456L13_4570 0.41 +1.0
5,100,036 + PfGW456L13_4570 0.41 +1.2
5,100,037 - PfGW456L13_4570 0.41 +0.2
5,100,037 - PfGW456L13_4570 0.41 +0.5
5,100,048 + PfGW456L13_4570 0.45 -0.2
5,100,049 - PfGW456L13_4570 0.45 -0.3
5,100,073 - PfGW456L13_4570 0.52 +0.8
5,100,073 - PfGW456L13_4570 0.52 +1.4
5,100,087 + PfGW456L13_4570 0.57 +0.2
5,100,087 + PfGW456L13_4570 0.57 -0.4
5,100,087 + PfGW456L13_4570 0.57 +0.1
5,100,087 + PfGW456L13_4570 0.57 -0.0
5,100,088 - PfGW456L13_4570 0.57 +0.6
5,100,088 - PfGW456L13_4570 0.57 +0.9
5,100,088 - PfGW456L13_4570 0.57 +1.4
5,100,102 + PfGW456L13_4570 0.61 -0.2
5,100,103 - PfGW456L13_4570 0.62 +0.5
5,100,284 + +0.4
5,100,344 + PfGW456L13_4571 0.11 +0.7
5,100,344 + PfGW456L13_4571 0.11 -0.4
5,100,344 + PfGW456L13_4571 0.11 -0.2
5,100,344 + PfGW456L13_4571 0.11 -0.0
5,100,344 + PfGW456L13_4571 0.11 +0.4
5,100,344 + PfGW456L13_4571 0.11 +0.4
5,100,344 + PfGW456L13_4571 0.11 +1.4
5,100,344 + PfGW456L13_4571 0.11 -0.9
5,100,345 - PfGW456L13_4571 0.11 +0.5
5,100,345 - PfGW456L13_4571 0.11 +1.0
5,100,345 - PfGW456L13_4571 0.11 -0.3
5,100,345 - PfGW456L13_4571 0.11 +0.1
5,100,345 - PfGW456L13_4571 0.11 -0.6
5,100,345 - PfGW456L13_4571 0.11 -0.4
5,100,345 - PfGW456L13_4571 0.11 -1.2
5,100,345 - PfGW456L13_4571 0.11 -0.5
5,100,479 + PfGW456L13_4571 0.23 +1.0
5,100,479 + PfGW456L13_4571 0.23 +1.7
5,100,599 + PfGW456L13_4571 0.34 +1.2
5,100,599 + PfGW456L13_4571 0.34 +0.6
5,100,600 - PfGW456L13_4571 0.34 +0.7
5,100,600 - PfGW456L13_4571 0.34 +0.1
5,100,600 - PfGW456L13_4571 0.34 -0.6
5,100,605 + PfGW456L13_4571 0.35 -0.7
5,100,605 + PfGW456L13_4571 0.35 +0.2
5,100,605 + PfGW456L13_4571 0.35 -1.6
5,100,842 + PfGW456L13_4571 0.57 +1.1
5,100,842 + PfGW456L13_4571 0.57 -1.1
5,100,842 + PfGW456L13_4571 0.57 -0.1
5,100,843 - PfGW456L13_4571 0.57 -0.4
5,100,843 - PfGW456L13_4571 0.57 -1.3
5,100,843 - PfGW456L13_4571 0.57 +0.2
5,100,843 - PfGW456L13_4571 0.57 +0.9
5,100,843 - PfGW456L13_4571 0.57 +1.5
5,100,879 - PfGW456L13_4571 0.60 +0.7
5,100,879 - PfGW456L13_4571 0.60 +1.3
5,100,879 - PfGW456L13_4571 0.60 -0.1
5,100,884 + PfGW456L13_4571 0.60 -0.1
5,100,885 - PfGW456L13_4571 0.60 +0.5
5,100,885 - PfGW456L13_4571 0.60 +0.3
5,100,948 - PfGW456L13_4571 0.66 -0.3
5,100,965 + PfGW456L13_4571 0.68 +0.5
5,100,966 - PfGW456L13_4571 0.68 -1.0
5,101,010 + PfGW456L13_4571 0.72 -1.1
5,101,103 + PfGW456L13_4571 0.80 +0.2
5,101,103 + PfGW456L13_4571 0.80 +0.3
5,101,104 - PfGW456L13_4571 0.80 -0.5
5,101,104 - PfGW456L13_4571 0.80 +0.6
5,101,188 - PfGW456L13_4571 0.88 +0.6
5,101,188 - PfGW456L13_4571 0.88 +0.4
5,101,188 - PfGW456L13_4571 0.88 -0.2

Or see this region's nucleotide sequence