Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_426

Experiment: Zinc 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_425 and PfGW456L13_426 are separated by 130 nucleotidesPfGW456L13_426 and PfGW456L13_427 are separated by 115 nucleotides PfGW456L13_425 - Ribosomal protein S6 glutaminyl transferase, at 488,655 to 489,560 _425 PfGW456L13_426 - Osmolarity sensory histidine kinase EnvZ, at 489,691 to 491,004 _426 PfGW456L13_427 - Two-component system response regulator OmpR, at 491,120 to 491,860 _427 Position (kb) 489 490 491 492Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 488.691 kb on + strandat 488.691 kb on + strandat 488.691 kb on + strandat 488.691 kb on + strandat 488.692 kb on - strandat 488.766 kb on + strand, within PfGW456L13_425at 488.766 kb on + strand, within PfGW456L13_425at 488.766 kb on + strand, within PfGW456L13_425at 488.767 kb on - strand, within PfGW456L13_425at 488.767 kb on - strand, within PfGW456L13_425at 488.767 kb on - strand, within PfGW456L13_425at 488.767 kb on - strand, within PfGW456L13_425at 488.767 kb on - strand, within PfGW456L13_425at 488.767 kb on - strand, within PfGW456L13_425at 488.868 kb on + strand, within PfGW456L13_425at 488.868 kb on + strand, within PfGW456L13_425at 488.868 kb on + strand, within PfGW456L13_425at 488.868 kb on + strand, within PfGW456L13_425at 488.868 kb on + strand, within PfGW456L13_425at 488.869 kb on - strand, within PfGW456L13_425at 488.869 kb on - strand, within PfGW456L13_425at 488.869 kb on - strand, within PfGW456L13_425at 488.869 kb on - strand, within PfGW456L13_425at 488.869 kb on - strand, within PfGW456L13_425at 488.869 kb on - strand, within PfGW456L13_425at 488.908 kb on + strand, within PfGW456L13_425at 488.908 kb on + strand, within PfGW456L13_425at 488.908 kb on + strand, within PfGW456L13_425at 488.908 kb on + strand, within PfGW456L13_425at 488.908 kb on + strand, within PfGW456L13_425at 489.106 kb on + strand, within PfGW456L13_425at 489.107 kb on - strand, within PfGW456L13_425at 489.107 kb on - strand, within PfGW456L13_425at 489.107 kb on - strand, within PfGW456L13_425at 489.189 kb on + strand, within PfGW456L13_425at 489.189 kb on + strand, within PfGW456L13_425at 489.189 kb on + strand, within PfGW456L13_425at 489.189 kb on + strand, within PfGW456L13_425at 489.189 kb on + strand, within PfGW456L13_425at 489.189 kb on + strand, within PfGW456L13_425at 489.189 kb on + strand, within PfGW456L13_425at 489.190 kb on - strand, within PfGW456L13_425at 489.190 kb on - strand, within PfGW456L13_425at 489.190 kb on - strand, within PfGW456L13_425at 489.355 kb on + strand, within PfGW456L13_425at 489.355 kb on + strand, within PfGW456L13_425at 489.437 kb on + strand, within PfGW456L13_425at 489.437 kb on + strand, within PfGW456L13_425at 489.437 kb on + strand, within PfGW456L13_425at 489.438 kb on - strand, within PfGW456L13_425at 489.438 kb on - strand, within PfGW456L13_425at 489.533 kb on + strandat 489.558 kb on + strandat 489.624 kb on - strandat 489.624 kb on - strandat 489.934 kb on + strand, within PfGW456L13_426at 489.934 kb on + strand, within PfGW456L13_426at 489.934 kb on + strand, within PfGW456L13_426at 489.934 kb on + strand, within PfGW456L13_426at 489.935 kb on - strand, within PfGW456L13_426at 489.935 kb on - strand, within PfGW456L13_426at 489.935 kb on - strand, within PfGW456L13_426at 489.935 kb on - strand, within PfGW456L13_426at 489.938 kb on + strand, within PfGW456L13_426at 489.938 kb on + strand, within PfGW456L13_426at 489.938 kb on + strand, within PfGW456L13_426at 489.938 kb on + strand, within PfGW456L13_426at 489.938 kb on + strand, within PfGW456L13_426at 489.939 kb on - strand, within PfGW456L13_426at 489.939 kb on - strand, within PfGW456L13_426at 489.952 kb on - strand, within PfGW456L13_426at 489.962 kb on - strand, within PfGW456L13_426at 489.966 kb on - strand, within PfGW456L13_426at 489.966 kb on - strand, within PfGW456L13_426at 489.966 kb on - strand, within PfGW456L13_426at 489.966 kb on - strand, within PfGW456L13_426at 489.966 kb on - strand, within PfGW456L13_426at 490.417 kb on - strand, within PfGW456L13_426at 490.470 kb on - strand, within PfGW456L13_426at 490.470 kb on - strand, within PfGW456L13_426at 490.542 kb on + strand, within PfGW456L13_426at 490.722 kb on - strand, within PfGW456L13_426at 490.722 kb on - strand, within PfGW456L13_426at 490.722 kb on - strand, within PfGW456L13_426at 490.734 kb on - strand, within PfGW456L13_426at 490.836 kb on - strand, within PfGW456L13_426at 490.937 kb on - strandat 490.937 kb on - strandat 491.107 kb on + strandat 491.107 kb on + strandat 491.108 kb on - strandat 491.108 kb on - strandat 491.108 kb on - strandat 491.154 kb on + strandat 491.182 kb on - strandat 491.340 kb on - strand, within PfGW456L13_427at 491.340 kb on - strand, within PfGW456L13_427at 491.416 kb on - strand, within PfGW456L13_427at 491.889 kb on + strandat 491.897 kb on - strandat 491.897 kb on - strandat 491.898 kb on - strandat 491.906 kb on + strandat 491.908 kb on + strandat 491.908 kb on + strandat 491.908 kb on + strandat 491.908 kb on + strandat 491.908 kb on + strandat 491.909 kb on - strandat 491.909 kb on - strandat 491.909 kb on - strandat 491.909 kb on - strandat 491.909 kb on - strandat 491.909 kb on - strandat 491.909 kb on - strandat 491.909 kb on - strandat 491.928 kb on - strandat 491.943 kb on + strandat 491.943 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
remove
488,691 + +0.7
488,691 + -0.2
488,691 + +0.2
488,691 + +1.1
488,692 - +1.0
488,766 + PfGW456L13_425 0.12 +0.2
488,766 + PfGW456L13_425 0.12 +0.5
488,766 + PfGW456L13_425 0.12 +1.8
488,767 - PfGW456L13_425 0.12 -0.2
488,767 - PfGW456L13_425 0.12 -0.1
488,767 - PfGW456L13_425 0.12 -0.2
488,767 - PfGW456L13_425 0.12 +0.2
488,767 - PfGW456L13_425 0.12 +0.1
488,767 - PfGW456L13_425 0.12 -0.4
488,868 + PfGW456L13_425 0.24 +0.7
488,868 + PfGW456L13_425 0.24 +0.3
488,868 + PfGW456L13_425 0.24 +0.2
488,868 + PfGW456L13_425 0.24 +0.2
488,868 + PfGW456L13_425 0.24 +0.2
488,869 - PfGW456L13_425 0.24 -0.2
488,869 - PfGW456L13_425 0.24 +1.1
488,869 - PfGW456L13_425 0.24 -0.4
488,869 - PfGW456L13_425 0.24 +0.4
488,869 - PfGW456L13_425 0.24 +0.5
488,869 - PfGW456L13_425 0.24 +0.2
488,908 + PfGW456L13_425 0.28 -0.8
488,908 + PfGW456L13_425 0.28 -0.4
488,908 + PfGW456L13_425 0.28 +0.7
488,908 + PfGW456L13_425 0.28 +0.2
488,908 + PfGW456L13_425 0.28 +0.6
489,106 + PfGW456L13_425 0.50 -0.3
489,107 - PfGW456L13_425 0.50 +0.2
489,107 - PfGW456L13_425 0.50 -0.6
489,107 - PfGW456L13_425 0.50 -0.0
489,189 + PfGW456L13_425 0.59 +0.7
489,189 + PfGW456L13_425 0.59 +1.0
489,189 + PfGW456L13_425 0.59 +0.3
489,189 + PfGW456L13_425 0.59 -0.7
489,189 + PfGW456L13_425 0.59 +0.1
489,189 + PfGW456L13_425 0.59 +1.2
489,189 + PfGW456L13_425 0.59 -0.2
489,190 - PfGW456L13_425 0.59 -2.1
489,190 - PfGW456L13_425 0.59 -0.6
489,190 - PfGW456L13_425 0.59 +0.2
489,355 + PfGW456L13_425 0.77 +0.2
489,355 + PfGW456L13_425 0.77 -0.8
489,437 + PfGW456L13_425 0.86 +1.7
489,437 + PfGW456L13_425 0.86 +0.2
489,437 + PfGW456L13_425 0.86 +0.1
489,438 - PfGW456L13_425 0.86 -0.3
489,438 - PfGW456L13_425 0.86 +0.2
489,533 + +1.1
489,558 + +0.7
489,624 - -0.1
489,624 - +0.8
489,934 + PfGW456L13_426 0.18 -1.2
489,934 + PfGW456L13_426 0.18 -0.3
489,934 + PfGW456L13_426 0.18 -0.0
489,934 + PfGW456L13_426 0.18 +0.2
489,935 - PfGW456L13_426 0.19 -1.3
489,935 - PfGW456L13_426 0.19 -1.5
489,935 - PfGW456L13_426 0.19 -1.2
489,935 - PfGW456L13_426 0.19 -2.8
489,938 + PfGW456L13_426 0.19 -1.0
489,938 + PfGW456L13_426 0.19 -0.8
489,938 + PfGW456L13_426 0.19 -1.5
489,938 + PfGW456L13_426 0.19 -2.6
489,938 + PfGW456L13_426 0.19 -0.2
489,939 - PfGW456L13_426 0.19 -0.2
489,939 - PfGW456L13_426 0.19 -1.3
489,952 - PfGW456L13_426 0.20 -0.9
489,962 - PfGW456L13_426 0.21 -2.2
489,966 - PfGW456L13_426 0.21 -0.1
489,966 - PfGW456L13_426 0.21 -0.6
489,966 - PfGW456L13_426 0.21 -1.6
489,966 - PfGW456L13_426 0.21 -1.7
489,966 - PfGW456L13_426 0.21 -0.6
490,417 - PfGW456L13_426 0.55 +0.9
490,470 - PfGW456L13_426 0.59 -1.1
490,470 - PfGW456L13_426 0.59 -1.9
490,542 + PfGW456L13_426 0.65 -2.1
490,722 - PfGW456L13_426 0.78 -0.6
490,722 - PfGW456L13_426 0.78 -3.1
490,722 - PfGW456L13_426 0.78 -1.2
490,734 - PfGW456L13_426 0.79 -0.0
490,836 - PfGW456L13_426 0.87 -1.5
490,937 - +0.7
490,937 - -1.8
491,107 + +0.5
491,107 + -0.7
491,108 - +2.2
491,108 - +0.5
491,108 - +1.1
491,154 + +0.6
491,182 - -0.5
491,340 - PfGW456L13_427 0.30 -0.2
491,340 - PfGW456L13_427 0.30 -0.8
491,416 - PfGW456L13_427 0.40 -1.2
491,889 + +0.2
491,897 - +0.6
491,897 - +0.1
491,898 - -2.8
491,906 + -0.6
491,908 + -2.0
491,908 + -0.5
491,908 + -0.8
491,908 + -1.8
491,908 + -0.9
491,909 - -0.8
491,909 - -0.1
491,909 - +1.2
491,909 - +0.0
491,909 - +0.5
491,909 - -1.3
491,909 - +0.6
491,909 - +1.5
491,928 - +0.4
491,943 + +0.4
491,943 + +1.8

Or see this region's nucleotide sequence