Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4255

Experiment: Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4253 and PfGW456L13_4254 are separated by 8 nucleotidesPfGW456L13_4254 and PfGW456L13_4255 are separated by 201 nucleotidesPfGW456L13_4255 and PfGW456L13_4256 are separated by 62 nucleotides PfGW456L13_4253 - Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2), at 4,766,954 to 4,767,604 _4253 PfGW456L13_4254 - FIG00955360: hypothetical protein, at 4,767,613 to 4,768,326 _4254 PfGW456L13_4255 - FIG00964480: hypothetical protein, at 4,768,528 to 4,768,944 _4255 PfGW456L13_4256 - Pirin, at 4,769,007 to 4,769,867 _4256 Position (kb) 4768 4769Strain fitness (log2 ratio) -3 -2 -1 0 1at 4767.570 kb on + strandat 4767.602 kb on + strandat 4767.613 kb on - strandat 4767.698 kb on - strand, within PfGW456L13_4254at 4767.698 kb on - strand, within PfGW456L13_4254at 4767.753 kb on + strand, within PfGW456L13_4254at 4767.865 kb on + strand, within PfGW456L13_4254at 4767.865 kb on + strand, within PfGW456L13_4254at 4768.006 kb on + strand, within PfGW456L13_4254at 4768.006 kb on + strand, within PfGW456L13_4254at 4768.007 kb on - strand, within PfGW456L13_4254at 4768.057 kb on + strand, within PfGW456L13_4254at 4768.058 kb on - strand, within PfGW456L13_4254at 4768.086 kb on + strand, within PfGW456L13_4254at 4768.087 kb on - strand, within PfGW456L13_4254at 4768.090 kb on + strand, within PfGW456L13_4254at 4768.090 kb on + strand, within PfGW456L13_4254at 4768.090 kb on + strand, within PfGW456L13_4254at 4768.090 kb on + strand, within PfGW456L13_4254at 4768.090 kb on + strand, within PfGW456L13_4254at 4768.090 kb on + strand, within PfGW456L13_4254at 4768.090 kb on + strand, within PfGW456L13_4254at 4768.091 kb on - strand, within PfGW456L13_4254at 4768.091 kb on - strand, within PfGW456L13_4254at 4768.091 kb on - strand, within PfGW456L13_4254at 4768.091 kb on - strand, within PfGW456L13_4254at 4768.091 kb on - strand, within PfGW456L13_4254at 4768.091 kb on - strand, within PfGW456L13_4254at 4768.091 kb on - strand, within PfGW456L13_4254at 4768.091 kb on - strand, within PfGW456L13_4254at 4768.225 kb on + strand, within PfGW456L13_4254at 4768.270 kb on + strandat 4768.270 kb on + strandat 4768.343 kb on + strandat 4768.344 kb on - strandat 4768.371 kb on + strandat 4768.394 kb on + strandat 4768.395 kb on - strandat 4768.471 kb on - strandat 4768.471 kb on - strandat 4768.471 kb on - strandat 4768.471 kb on - strandat 4768.536 kb on + strandat 4768.657 kb on + strand, within PfGW456L13_4255at 4768.657 kb on + strand, within PfGW456L13_4255at 4768.657 kb on + strand, within PfGW456L13_4255at 4768.705 kb on + strand, within PfGW456L13_4255at 4768.705 kb on + strand, within PfGW456L13_4255at 4768.705 kb on + strand, within PfGW456L13_4255at 4768.706 kb on - strand, within PfGW456L13_4255at 4768.706 kb on - strand, within PfGW456L13_4255at 4768.821 kb on - strand, within PfGW456L13_4255at 4768.821 kb on - strand, within PfGW456L13_4255at 4768.821 kb on - strand, within PfGW456L13_4255at 4768.942 kb on + strandat 4769.202 kb on + strand, within PfGW456L13_4256at 4769.202 kb on + strand, within PfGW456L13_4256at 4769.202 kb on + strand, within PfGW456L13_4256at 4769.202 kb on + strand, within PfGW456L13_4256at 4769.202 kb on + strand, within PfGW456L13_4256at 4769.202 kb on + strand, within PfGW456L13_4256at 4769.202 kb on + strand, within PfGW456L13_4256at 4769.202 kb on + strand, within PfGW456L13_4256at 4769.202 kb on + strand, within PfGW456L13_4256at 4769.202 kb on + strand, within PfGW456L13_4256at 4769.203 kb on - strand, within PfGW456L13_4256at 4769.203 kb on - strand, within PfGW456L13_4256at 4769.203 kb on - strand, within PfGW456L13_4256at 4769.203 kb on - strand, within PfGW456L13_4256at 4769.203 kb on - strand, within PfGW456L13_4256at 4769.203 kb on - strand, within PfGW456L13_4256at 4769.203 kb on - strand, within PfGW456L13_4256at 4769.203 kb on - strand, within PfGW456L13_4256at 4769.203 kb on - strand, within PfGW456L13_4256at 4769.203 kb on - strand, within PfGW456L13_4256at 4769.203 kb on - strand, within PfGW456L13_4256at 4769.410 kb on - strand, within PfGW456L13_4256at 4769.410 kb on - strand, within PfGW456L13_4256at 4769.410 kb on - strand, within PfGW456L13_4256at 4769.522 kb on + strand, within PfGW456L13_4256at 4769.523 kb on - strand, within PfGW456L13_4256at 4769.529 kb on + strand, within PfGW456L13_4256at 4769.530 kb on - strand, within PfGW456L13_4256at 4769.598 kb on + strand, within PfGW456L13_4256at 4769.598 kb on + strand, within PfGW456L13_4256at 4769.598 kb on + strand, within PfGW456L13_4256at 4769.598 kb on + strand, within PfGW456L13_4256at 4769.598 kb on + strand, within PfGW456L13_4256at 4769.598 kb on + strand, within PfGW456L13_4256at 4769.598 kb on + strand, within PfGW456L13_4256at 4769.598 kb on + strand, within PfGW456L13_4256at 4769.599 kb on - strand, within PfGW456L13_4256at 4769.599 kb on - strand, within PfGW456L13_4256at 4769.599 kb on - strand, within PfGW456L13_4256at 4769.599 kb on - strand, within PfGW456L13_4256at 4769.599 kb on - strand, within PfGW456L13_4256at 4769.639 kb on - strand, within PfGW456L13_4256at 4769.639 kb on - strand, within PfGW456L13_4256at 4769.647 kb on - strand, within PfGW456L13_4256at 4769.659 kb on + strand, within PfGW456L13_4256at 4769.884 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
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4,767,570 + +0.9
4,767,602 + -0.4
4,767,613 - +0.0
4,767,698 - PfGW456L13_4254 0.12 -2.2
4,767,698 - PfGW456L13_4254 0.12 -3.2
4,767,753 + PfGW456L13_4254 0.20 -3.0
4,767,865 + PfGW456L13_4254 0.35 -3.5
4,767,865 + PfGW456L13_4254 0.35 -3.1
4,768,006 + PfGW456L13_4254 0.55 -2.2
4,768,006 + PfGW456L13_4254 0.55 -3.5
4,768,007 - PfGW456L13_4254 0.55 -3.5
4,768,057 + PfGW456L13_4254 0.62 -1.5
4,768,058 - PfGW456L13_4254 0.62 -2.5
4,768,086 + PfGW456L13_4254 0.66 -2.1
4,768,087 - PfGW456L13_4254 0.66 -2.7
4,768,090 + PfGW456L13_4254 0.67 -3.4
4,768,090 + PfGW456L13_4254 0.67 -1.7
4,768,090 + PfGW456L13_4254 0.67 -2.5
4,768,090 + PfGW456L13_4254 0.67 -3.7
4,768,090 + PfGW456L13_4254 0.67 -1.8
4,768,090 + PfGW456L13_4254 0.67 -3.0
4,768,090 + PfGW456L13_4254 0.67 -3.1
4,768,091 - PfGW456L13_4254 0.67 -2.4
4,768,091 - PfGW456L13_4254 0.67 -1.0
4,768,091 - PfGW456L13_4254 0.67 -3.1
4,768,091 - PfGW456L13_4254 0.67 +0.3
4,768,091 - PfGW456L13_4254 0.67 -3.5
4,768,091 - PfGW456L13_4254 0.67 -0.2
4,768,091 - PfGW456L13_4254 0.67 -1.5
4,768,091 - PfGW456L13_4254 0.67 -1.5
4,768,225 + PfGW456L13_4254 0.86 -3.5
4,768,270 + -3.5
4,768,270 + -3.2
4,768,343 + +0.8
4,768,344 - +0.1
4,768,371 + -0.3
4,768,394 + +0.7
4,768,395 - -0.6
4,768,471 - +0.0
4,768,471 - -0.3
4,768,471 - -0.9
4,768,471 - -1.2
4,768,536 + +1.0
4,768,657 + PfGW456L13_4255 0.31 +0.0
4,768,657 + PfGW456L13_4255 0.31 -1.4
4,768,657 + PfGW456L13_4255 0.31 +1.0
4,768,705 + PfGW456L13_4255 0.42 +0.9
4,768,705 + PfGW456L13_4255 0.42 +0.9
4,768,705 + PfGW456L13_4255 0.42 +0.7
4,768,706 - PfGW456L13_4255 0.43 -0.1
4,768,706 - PfGW456L13_4255 0.43 +0.4
4,768,821 - PfGW456L13_4255 0.70 +0.6
4,768,821 - PfGW456L13_4255 0.70 +1.2
4,768,821 - PfGW456L13_4255 0.70 -1.2
4,768,942 + -0.8
4,769,202 + PfGW456L13_4256 0.23 -0.3
4,769,202 + PfGW456L13_4256 0.23 +0.4
4,769,202 + PfGW456L13_4256 0.23 +0.6
4,769,202 + PfGW456L13_4256 0.23 -0.1
4,769,202 + PfGW456L13_4256 0.23 +0.8
4,769,202 + PfGW456L13_4256 0.23 +0.4
4,769,202 + PfGW456L13_4256 0.23 +0.6
4,769,202 + PfGW456L13_4256 0.23 +0.8
4,769,202 + PfGW456L13_4256 0.23 +0.4
4,769,202 + PfGW456L13_4256 0.23 -1.4
4,769,203 - PfGW456L13_4256 0.23 -0.1
4,769,203 - PfGW456L13_4256 0.23 -0.4
4,769,203 - PfGW456L13_4256 0.23 -0.4
4,769,203 - PfGW456L13_4256 0.23 +0.8
4,769,203 - PfGW456L13_4256 0.23 +0.1
4,769,203 - PfGW456L13_4256 0.23 -1.0
4,769,203 - PfGW456L13_4256 0.23 -2.3
4,769,203 - PfGW456L13_4256 0.23 +0.0
4,769,203 - PfGW456L13_4256 0.23 +0.1
4,769,203 - PfGW456L13_4256 0.23 +0.4
4,769,203 - PfGW456L13_4256 0.23 -0.6
4,769,410 - PfGW456L13_4256 0.47 -0.9
4,769,410 - PfGW456L13_4256 0.47 -0.1
4,769,410 - PfGW456L13_4256 0.47 +0.2
4,769,522 + PfGW456L13_4256 0.60 -0.5
4,769,523 - PfGW456L13_4256 0.60 -0.2
4,769,529 + PfGW456L13_4256 0.61 +0.1
4,769,530 - PfGW456L13_4256 0.61 +0.7
4,769,598 + PfGW456L13_4256 0.69 +0.6
4,769,598 + PfGW456L13_4256 0.69 -0.4
4,769,598 + PfGW456L13_4256 0.69 +0.4
4,769,598 + PfGW456L13_4256 0.69 -1.0
4,769,598 + PfGW456L13_4256 0.69 -0.4
4,769,598 + PfGW456L13_4256 0.69 -0.5
4,769,598 + PfGW456L13_4256 0.69 +0.6
4,769,598 + PfGW456L13_4256 0.69 -0.1
4,769,599 - PfGW456L13_4256 0.69 -0.7
4,769,599 - PfGW456L13_4256 0.69 -0.4
4,769,599 - PfGW456L13_4256 0.69 -0.2
4,769,599 - PfGW456L13_4256 0.69 +0.6
4,769,599 - PfGW456L13_4256 0.69 +0.4
4,769,639 - PfGW456L13_4256 0.73 +0.6
4,769,639 - PfGW456L13_4256 0.73 +1.2
4,769,647 - PfGW456L13_4256 0.74 +0.0
4,769,659 + PfGW456L13_4256 0.76 -0.7
4,769,884 + -0.6

Or see this region's nucleotide sequence