Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4200

Experiment: Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4199 and PfGW456L13_4200 overlap by 14 nucleotidesPfGW456L13_4200 and PfGW456L13_4201 overlap by 9 nucleotidesPfGW456L13_4201 and PfGW456L13_4202 overlap by 4 nucleotides PfGW456L13_4199 - ABC-type Fe3+ transport system, periplasmic component, at 4,711,557 to 4,712,621 _4199 PfGW456L13_4200 - hypothetical protein, at 4,712,608 to 4,712,808 _4200 PfGW456L13_4201 - FIG00956482: hypothetical protein, at 4,712,800 to 4,713,606 _4201 PfGW456L13_4202 - ABC transporter permease protein, at 4,713,603 to 4,714,448 _4202 Position (kb) 4712 4713Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4711.740 kb on + strand, within PfGW456L13_4199at 4711.741 kb on - strand, within PfGW456L13_4199at 4711.741 kb on - strand, within PfGW456L13_4199at 4711.741 kb on - strand, within PfGW456L13_4199at 4711.887 kb on + strand, within PfGW456L13_4199at 4711.887 kb on + strand, within PfGW456L13_4199at 4711.887 kb on + strand, within PfGW456L13_4199at 4711.887 kb on + strand, within PfGW456L13_4199at 4711.887 kb on + strand, within PfGW456L13_4199at 4711.888 kb on - strand, within PfGW456L13_4199at 4711.888 kb on - strand, within PfGW456L13_4199at 4711.888 kb on - strand, within PfGW456L13_4199at 4711.888 kb on - strand, within PfGW456L13_4199at 4711.888 kb on - strand, within PfGW456L13_4199at 4711.956 kb on + strand, within PfGW456L13_4199at 4711.956 kb on + strand, within PfGW456L13_4199at 4712.046 kb on + strand, within PfGW456L13_4199at 4712.046 kb on + strand, within PfGW456L13_4199at 4712.046 kb on + strand, within PfGW456L13_4199at 4712.046 kb on + strand, within PfGW456L13_4199at 4712.046 kb on + strand, within PfGW456L13_4199at 4712.046 kb on + strand, within PfGW456L13_4199at 4712.046 kb on + strand, within PfGW456L13_4199at 4712.046 kb on + strand, within PfGW456L13_4199at 4712.047 kb on - strandat 4712.047 kb on - strand, within PfGW456L13_4199at 4712.047 kb on - strand, within PfGW456L13_4199at 4712.099 kb on - strand, within PfGW456L13_4199at 4712.099 kb on - strand, within PfGW456L13_4199at 4712.271 kb on + strand, within PfGW456L13_4199at 4712.271 kb on + strand, within PfGW456L13_4199at 4712.271 kb on + strand, within PfGW456L13_4199at 4712.271 kb on + strand, within PfGW456L13_4199at 4712.272 kb on - strand, within PfGW456L13_4199at 4712.272 kb on - strand, within PfGW456L13_4199at 4712.272 kb on - strand, within PfGW456L13_4199at 4712.272 kb on - strand, within PfGW456L13_4199at 4712.272 kb on - strand, within PfGW456L13_4199at 4712.301 kb on + strand, within PfGW456L13_4199at 4712.301 kb on + strand, within PfGW456L13_4199at 4712.301 kb on + strand, within PfGW456L13_4199at 4712.301 kb on + strand, within PfGW456L13_4199at 4712.301 kb on + strand, within PfGW456L13_4199at 4712.301 kb on + strand, within PfGW456L13_4199at 4712.301 kb on + strand, within PfGW456L13_4199at 4712.302 kb on - strand, within PfGW456L13_4199at 4712.302 kb on - strand, within PfGW456L13_4199at 4712.302 kb on - strand, within PfGW456L13_4199at 4712.302 kb on - strand, within PfGW456L13_4199at 4712.302 kb on - strand, within PfGW456L13_4199at 4712.364 kb on + strandat 4712.403 kb on + strand, within PfGW456L13_4199at 4712.403 kb on + strand, within PfGW456L13_4199at 4712.403 kb on + strand, within PfGW456L13_4199at 4712.403 kb on + strand, within PfGW456L13_4199at 4712.404 kb on - strand, within PfGW456L13_4199at 4712.404 kb on - strand, within PfGW456L13_4199at 4712.404 kb on - strand, within PfGW456L13_4199at 4712.404 kb on - strand, within PfGW456L13_4199at 4712.404 kb on - strand, within PfGW456L13_4199at 4712.404 kb on - strand, within PfGW456L13_4199at 4712.404 kb on - strand, within PfGW456L13_4199at 4712.404 kb on - strand, within PfGW456L13_4199at 4712.520 kb on + strandat 4712.520 kb on + strandat 4712.521 kb on - strandat 4712.521 kb on - strandat 4712.521 kb on - strandat 4712.521 kb on - strandat 4712.612 kb on + strandat 4712.612 kb on + strandat 4712.613 kb on - strandat 4712.613 kb on - strandat 4712.613 kb on - strandat 4712.613 kb on - strandat 4712.764 kb on + strand, within PfGW456L13_4200at 4712.764 kb on + strand, within PfGW456L13_4200at 4712.765 kb on - strand, within PfGW456L13_4200at 4712.765 kb on - strandat 4712.765 kb on - strand, within PfGW456L13_4200at 4712.765 kb on - strand, within PfGW456L13_4200at 4712.765 kb on - strand, within PfGW456L13_4200at 4712.765 kb on - strand, within PfGW456L13_4200at 4712.799 kb on + strandat 4712.799 kb on + strandat 4712.842 kb on + strandat 4712.842 kb on + strandat 4712.843 kb on - strandat 4712.843 kb on - strandat 4712.881 kb on + strand, within PfGW456L13_4201at 4712.881 kb on + strand, within PfGW456L13_4201at 4712.881 kb on + strand, within PfGW456L13_4201at 4712.882 kb on - strand, within PfGW456L13_4201at 4712.908 kb on + strand, within PfGW456L13_4201at 4712.908 kb on + strand, within PfGW456L13_4201at 4712.909 kb on - strand, within PfGW456L13_4201at 4712.909 kb on - strand, within PfGW456L13_4201at 4712.909 kb on - strand, within PfGW456L13_4201at 4712.909 kb on - strand, within PfGW456L13_4201at 4712.950 kb on + strandat 4712.950 kb on + strand, within PfGW456L13_4201at 4712.950 kb on + strand, within PfGW456L13_4201at 4712.951 kb on - strand, within PfGW456L13_4201at 4713.037 kb on + strand, within PfGW456L13_4201at 4713.037 kb on + strand, within PfGW456L13_4201at 4713.037 kb on + strand, within PfGW456L13_4201at 4713.037 kb on + strand, within PfGW456L13_4201at 4713.037 kb on + strand, within PfGW456L13_4201at 4713.037 kb on + strand, within PfGW456L13_4201at 4713.037 kb on + strand, within PfGW456L13_4201at 4713.038 kb on - strand, within PfGW456L13_4201at 4713.038 kb on - strand, within PfGW456L13_4201at 4713.038 kb on - strand, within PfGW456L13_4201at 4713.038 kb on - strand, within PfGW456L13_4201at 4713.038 kb on - strand, within PfGW456L13_4201at 4713.038 kb on - strand, within PfGW456L13_4201at 4713.038 kb on - strand, within PfGW456L13_4201at 4713.043 kb on + strand, within PfGW456L13_4201at 4713.044 kb on - strand, within PfGW456L13_4201at 4713.083 kb on - strand, within PfGW456L13_4201at 4713.103 kb on + strand, within PfGW456L13_4201at 4713.104 kb on - strand, within PfGW456L13_4201at 4713.104 kb on - strand, within PfGW456L13_4201at 4713.104 kb on - strand, within PfGW456L13_4201at 4713.104 kb on - strand, within PfGW456L13_4201at 4713.104 kb on - strand, within PfGW456L13_4201at 4713.364 kb on + strand, within PfGW456L13_4201at 4713.470 kb on + strand, within PfGW456L13_4201at 4713.470 kb on + strand, within PfGW456L13_4201at 4713.470 kb on + strand, within PfGW456L13_4201at 4713.777 kb on + strand, within PfGW456L13_4202at 4713.777 kb on + strand, within PfGW456L13_4202at 4713.778 kb on - strand, within PfGW456L13_4202at 4713.796 kb on - strand, within PfGW456L13_4202

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
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4,711,740 + PfGW456L13_4199 0.17 -0.2
4,711,741 - PfGW456L13_4199 0.17 -0.6
4,711,741 - PfGW456L13_4199 0.17 +1.2
4,711,741 - PfGW456L13_4199 0.17 -0.6
4,711,887 + PfGW456L13_4199 0.31 +0.4
4,711,887 + PfGW456L13_4199 0.31 +0.5
4,711,887 + PfGW456L13_4199 0.31 +0.5
4,711,887 + PfGW456L13_4199 0.31 +0.7
4,711,887 + PfGW456L13_4199 0.31 +0.1
4,711,888 - PfGW456L13_4199 0.31 +0.5
4,711,888 - PfGW456L13_4199 0.31 +0.9
4,711,888 - PfGW456L13_4199 0.31 +0.2
4,711,888 - PfGW456L13_4199 0.31 +0.3
4,711,888 - PfGW456L13_4199 0.31 -1.2
4,711,956 + PfGW456L13_4199 0.37 -0.2
4,711,956 + PfGW456L13_4199 0.37 +0.5
4,712,046 + PfGW456L13_4199 0.46 -0.1
4,712,046 + PfGW456L13_4199 0.46 -0.7
4,712,046 + PfGW456L13_4199 0.46 -0.2
4,712,046 + PfGW456L13_4199 0.46 -0.1
4,712,046 + PfGW456L13_4199 0.46 -0.2
4,712,046 + PfGW456L13_4199 0.46 +1.8
4,712,046 + PfGW456L13_4199 0.46 +0.7
4,712,046 + PfGW456L13_4199 0.46 -0.2
4,712,047 - +2.3
4,712,047 - PfGW456L13_4199 0.46 -0.5
4,712,047 - PfGW456L13_4199 0.46 +0.5
4,712,099 - PfGW456L13_4199 0.51 +1.6
4,712,099 - PfGW456L13_4199 0.51 -0.1
4,712,271 + PfGW456L13_4199 0.67 +0.3
4,712,271 + PfGW456L13_4199 0.67 +0.2
4,712,271 + PfGW456L13_4199 0.67 -0.2
4,712,271 + PfGW456L13_4199 0.67 +0.4
4,712,272 - PfGW456L13_4199 0.67 +0.3
4,712,272 - PfGW456L13_4199 0.67 +0.7
4,712,272 - PfGW456L13_4199 0.67 +0.6
4,712,272 - PfGW456L13_4199 0.67 -0.2
4,712,272 - PfGW456L13_4199 0.67 -0.5
4,712,301 + PfGW456L13_4199 0.70 -1.0
4,712,301 + PfGW456L13_4199 0.70 +0.3
4,712,301 + PfGW456L13_4199 0.70 +0.4
4,712,301 + PfGW456L13_4199 0.70 +0.6
4,712,301 + PfGW456L13_4199 0.70 +0.1
4,712,301 + PfGW456L13_4199 0.70 +0.3
4,712,301 + PfGW456L13_4199 0.70 +1.2
4,712,302 - PfGW456L13_4199 0.70 -1.1
4,712,302 - PfGW456L13_4199 0.70 +0.2
4,712,302 - PfGW456L13_4199 0.70 +0.5
4,712,302 - PfGW456L13_4199 0.70 -1.3
4,712,302 - PfGW456L13_4199 0.70 +0.0
4,712,364 + -0.2
4,712,403 + PfGW456L13_4199 0.79 +0.8
4,712,403 + PfGW456L13_4199 0.79 +0.4
4,712,403 + PfGW456L13_4199 0.79 +1.0
4,712,403 + PfGW456L13_4199 0.79 +1.3
4,712,404 - PfGW456L13_4199 0.80 +0.6
4,712,404 - PfGW456L13_4199 0.80 +1.2
4,712,404 - PfGW456L13_4199 0.80 -0.4
4,712,404 - PfGW456L13_4199 0.80 -0.0
4,712,404 - PfGW456L13_4199 0.80 +1.0
4,712,404 - PfGW456L13_4199 0.80 -0.4
4,712,404 - PfGW456L13_4199 0.80 -2.1
4,712,404 - PfGW456L13_4199 0.80 +0.3
4,712,520 + +0.3
4,712,520 + +3.1
4,712,521 - -0.5
4,712,521 - -0.6
4,712,521 - +1.0
4,712,521 - -0.8
4,712,612 + -0.4
4,712,612 + +0.8
4,712,613 - +0.0
4,712,613 - +0.4
4,712,613 - +0.4
4,712,613 - +1.0
4,712,764 + PfGW456L13_4200 0.78 -0.2
4,712,764 + PfGW456L13_4200 0.78 +1.6
4,712,765 - PfGW456L13_4200 0.78 +0.3
4,712,765 - +0.3
4,712,765 - PfGW456L13_4200 0.78 +0.5
4,712,765 - PfGW456L13_4200 0.78 -0.1
4,712,765 - PfGW456L13_4200 0.78 +0.9
4,712,765 - PfGW456L13_4200 0.78 +0.3
4,712,799 + +0.6
4,712,799 + +0.8
4,712,842 + -0.4
4,712,842 + -0.4
4,712,843 - -1.0
4,712,843 - -0.6
4,712,881 + PfGW456L13_4201 0.10 +0.7
4,712,881 + PfGW456L13_4201 0.10 -1.5
4,712,881 + PfGW456L13_4201 0.10 +0.2
4,712,882 - PfGW456L13_4201 0.10 +0.4
4,712,908 + PfGW456L13_4201 0.13 +0.9
4,712,908 + PfGW456L13_4201 0.13 -0.9
4,712,909 - PfGW456L13_4201 0.14 +0.2
4,712,909 - PfGW456L13_4201 0.14 +1.9
4,712,909 - PfGW456L13_4201 0.14 -0.2
4,712,909 - PfGW456L13_4201 0.14 +0.5
4,712,950 + +0.3
4,712,950 + PfGW456L13_4201 0.19 -2.6
4,712,950 + PfGW456L13_4201 0.19 +1.2
4,712,951 - PfGW456L13_4201 0.19 -0.3
4,713,037 + PfGW456L13_4201 0.29 -0.8
4,713,037 + PfGW456L13_4201 0.29 +0.4
4,713,037 + PfGW456L13_4201 0.29 +1.1
4,713,037 + PfGW456L13_4201 0.29 +2.1
4,713,037 + PfGW456L13_4201 0.29 -0.0
4,713,037 + PfGW456L13_4201 0.29 -0.4
4,713,037 + PfGW456L13_4201 0.29 +0.7
4,713,038 - PfGW456L13_4201 0.29 +0.4
4,713,038 - PfGW456L13_4201 0.29 +1.0
4,713,038 - PfGW456L13_4201 0.29 +0.8
4,713,038 - PfGW456L13_4201 0.29 +0.3
4,713,038 - PfGW456L13_4201 0.29 -1.0
4,713,038 - PfGW456L13_4201 0.29 +0.3
4,713,038 - PfGW456L13_4201 0.29 -0.8
4,713,043 + PfGW456L13_4201 0.30 +0.4
4,713,044 - PfGW456L13_4201 0.30 -0.0
4,713,083 - PfGW456L13_4201 0.35 -0.1
4,713,103 + PfGW456L13_4201 0.38 -1.9
4,713,104 - PfGW456L13_4201 0.38 +0.2
4,713,104 - PfGW456L13_4201 0.38 +0.5
4,713,104 - PfGW456L13_4201 0.38 +0.5
4,713,104 - PfGW456L13_4201 0.38 +0.9
4,713,104 - PfGW456L13_4201 0.38 -0.4
4,713,364 + PfGW456L13_4201 0.70 +0.9
4,713,470 + PfGW456L13_4201 0.83 +0.2
4,713,470 + PfGW456L13_4201 0.83 +0.5
4,713,470 + PfGW456L13_4201 0.83 -1.1
4,713,777 + PfGW456L13_4202 0.21 +0.9
4,713,777 + PfGW456L13_4202 0.21 -0.3
4,713,778 - PfGW456L13_4202 0.21 -0.0
4,713,796 - PfGW456L13_4202 0.23 -0.1

Or see this region's nucleotide sequence