Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4104

Experiment: Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4103 and PfGW456L13_4104 are separated by 10 nucleotidesPfGW456L13_4104 and PfGW456L13_4105 are separated by 73 nucleotides PfGW456L13_4103 - Nitrate reductase (EC 1.7.99.4) (from data), at 4,614,363 to 4,617,080 _4103 PfGW456L13_4104 - Uroporphyrinogen-III methyltransferase (EC 2.1.1.107), at 4,617,091 to 4,617,855 _4104 PfGW456L13_4105 - Major porin and structural outer membrane porin OprF, at 4,617,929 to 4,618,960 _4105 Position (kb) 4617 4618Strain fitness (log2 ratio) -3 -2 -1 0 1at 4616.441 kb on + strand, within PfGW456L13_4103at 4616.488 kb on + strand, within PfGW456L13_4103at 4616.488 kb on + strand, within PfGW456L13_4103at 4616.488 kb on + strand, within PfGW456L13_4103at 4616.488 kb on + strand, within PfGW456L13_4103at 4616.489 kb on - strand, within PfGW456L13_4103at 4616.533 kb on + strand, within PfGW456L13_4103at 4616.559 kb on + strand, within PfGW456L13_4103at 4616.559 kb on + strand, within PfGW456L13_4103at 4616.560 kb on - strand, within PfGW456L13_4103at 4616.560 kb on - strand, within PfGW456L13_4103at 4616.618 kb on + strand, within PfGW456L13_4103at 4616.619 kb on - strand, within PfGW456L13_4103at 4616.619 kb on - strand, within PfGW456L13_4103at 4616.694 kb on + strand, within PfGW456L13_4103at 4616.694 kb on + strand, within PfGW456L13_4103at 4616.717 kb on - strand, within PfGW456L13_4103at 4617.090 kb on + strandat 4617.090 kb on + strandat 4617.091 kb on - strandat 4617.091 kb on - strandat 4617.091 kb on - strandat 4617.091 kb on - strandat 4617.091 kb on - strandat 4617.091 kb on - strandat 4617.113 kb on + strandat 4617.114 kb on - strandat 4617.158 kb on + strandat 4617.328 kb on - strand, within PfGW456L13_4104at 4617.495 kb on - strand, within PfGW456L13_4104at 4617.495 kb on - strand, within PfGW456L13_4104at 4617.589 kb on + strand, within PfGW456L13_4104at 4617.589 kb on + strand, within PfGW456L13_4104at 4617.589 kb on + strand, within PfGW456L13_4104at 4617.589 kb on + strand, within PfGW456L13_4104at 4617.589 kb on + strand, within PfGW456L13_4104at 4617.589 kb on + strand, within PfGW456L13_4104at 4617.589 kb on + strand, within PfGW456L13_4104at 4617.590 kb on - strand, within PfGW456L13_4104at 4617.590 kb on - strand, within PfGW456L13_4104at 4617.629 kb on + strand, within PfGW456L13_4104at 4617.630 kb on - strand, within PfGW456L13_4104at 4617.853 kb on + strandat 4617.853 kb on + strandat 4617.853 kb on + strandat 4617.853 kb on + strandat 4617.854 kb on - strandat 4617.854 kb on - strandat 4617.854 kb on - strandat 4617.854 kb on - strandat 4617.854 kb on - strandat 4617.872 kb on - strandat 4617.931 kb on - strandat 4617.931 kb on - strandat 4617.935 kb on - strandat 4618.120 kb on - strand, within PfGW456L13_4105at 4618.215 kb on + strand, within PfGW456L13_4105at 4618.317 kb on - strand, within PfGW456L13_4105

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
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4,616,441 + PfGW456L13_4103 0.76 +0.1
4,616,488 + PfGW456L13_4103 0.78 +0.1
4,616,488 + PfGW456L13_4103 0.78 -0.7
4,616,488 + PfGW456L13_4103 0.78 +1.5
4,616,488 + PfGW456L13_4103 0.78 +1.0
4,616,489 - PfGW456L13_4103 0.78 -3.4
4,616,533 + PfGW456L13_4103 0.80 +0.7
4,616,559 + PfGW456L13_4103 0.81 -0.5
4,616,559 + PfGW456L13_4103 0.81 -1.1
4,616,560 - PfGW456L13_4103 0.81 -1.1
4,616,560 - PfGW456L13_4103 0.81 -0.6
4,616,618 + PfGW456L13_4103 0.83 -0.4
4,616,619 - PfGW456L13_4103 0.83 +0.5
4,616,619 - PfGW456L13_4103 0.83 +0.5
4,616,694 + PfGW456L13_4103 0.86 -0.5
4,616,694 + PfGW456L13_4103 0.86 +0.1
4,616,717 - PfGW456L13_4103 0.87 -0.5
4,617,090 + -1.3
4,617,090 + +0.7
4,617,091 - +0.6
4,617,091 - +0.2
4,617,091 - -0.5
4,617,091 - -0.4
4,617,091 - +0.7
4,617,091 - +0.6
4,617,113 + -0.2
4,617,114 - -0.0
4,617,158 + -0.3
4,617,328 - PfGW456L13_4104 0.31 +0.5
4,617,495 - PfGW456L13_4104 0.53 +1.2
4,617,495 - PfGW456L13_4104 0.53 +0.1
4,617,589 + PfGW456L13_4104 0.65 -0.3
4,617,589 + PfGW456L13_4104 0.65 +0.1
4,617,589 + PfGW456L13_4104 0.65 -0.7
4,617,589 + PfGW456L13_4104 0.65 -1.2
4,617,589 + PfGW456L13_4104 0.65 +1.1
4,617,589 + PfGW456L13_4104 0.65 +0.3
4,617,589 + PfGW456L13_4104 0.65 -1.1
4,617,590 - PfGW456L13_4104 0.65 +0.1
4,617,590 - PfGW456L13_4104 0.65 +1.3
4,617,629 + PfGW456L13_4104 0.70 +0.3
4,617,630 - PfGW456L13_4104 0.70 +1.2
4,617,853 + +0.7
4,617,853 + -0.2
4,617,853 + -0.6
4,617,853 + -0.6
4,617,854 - -1.3
4,617,854 - -1.0
4,617,854 - +0.4
4,617,854 - +0.5
4,617,854 - +0.4
4,617,872 - +1.0
4,617,931 - +0.7
4,617,931 - -3.3
4,617,935 - -2.3
4,618,120 - PfGW456L13_4105 0.19 -0.9
4,618,215 + PfGW456L13_4105 0.28 -2.7
4,618,317 - PfGW456L13_4105 0.38 +0.1

Or see this region's nucleotide sequence