Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4072

Experiment: Zinc 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_4070 and PfGW456L13_4071 are separated by 90 nucleotidesPfGW456L13_4071 and PfGW456L13_4072 are separated by 80 nucleotidesPfGW456L13_4072 and PfGW456L13_4073 are separated by 139 nucleotides PfGW456L13_4070 - Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22), at 4,568,455 to 4,569,840 _4070 PfGW456L13_4071 - Fumarate and nitrate reduction regulatory protein, at 4,569,931 to 4,570,665 _4071 PfGW456L13_4072 - Adenine phosphoribosyltransferase (EC 2.4.2.7), at 4,570,746 to 4,571,294 _4072 PfGW456L13_4073 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 4,571,434 to 4,572,582 _4073 Position (kb) 4570 4571 4572Strain fitness (log2 ratio) -1 0 1 2at 4569.796 kb on + strandat 4569.838 kb on + strandat 4569.839 kb on - strandat 4569.839 kb on - strandat 4569.839 kb on - strandat 4569.839 kb on - strandat 4569.851 kb on + strandat 4569.851 kb on + strandat 4569.851 kb on + strandat 4569.852 kb on - strandat 4569.852 kb on - strandat 4569.852 kb on - strandat 4569.878 kb on + strandat 4569.878 kb on + strandat 4569.878 kb on + strandat 4569.878 kb on + strandat 4569.878 kb on + strandat 4569.879 kb on - strandat 4569.879 kb on - strandat 4569.888 kb on + strandat 4569.894 kb on + strandat 4569.894 kb on + strandat 4569.902 kb on - strandat 4569.902 kb on - strandat 4569.945 kb on - strandat 4569.960 kb on + strandat 4569.961 kb on - strandat 4569.961 kb on - strandat 4569.961 kb on - strandat 4570.104 kb on + strand, within PfGW456L13_4071at 4570.105 kb on - strand, within PfGW456L13_4071at 4570.121 kb on - strand, within PfGW456L13_4071at 4570.522 kb on + strand, within PfGW456L13_4071at 4570.522 kb on + strand, within PfGW456L13_4071at 4570.522 kb on + strand, within PfGW456L13_4071at 4570.523 kb on - strand, within PfGW456L13_4071at 4570.523 kb on - strand, within PfGW456L13_4071at 4570.523 kb on - strand, within PfGW456L13_4071at 4570.523 kb on - strand, within PfGW456L13_4071at 4570.708 kb on + strandat 4570.708 kb on + strandat 4570.708 kb on + strandat 4570.708 kb on + strandat 4570.708 kb on + strandat 4570.709 kb on - strandat 4570.709 kb on - strandat 4570.709 kb on - strandat 4570.709 kb on - strandat 4570.890 kb on + strand, within PfGW456L13_4072at 4570.890 kb on + strand, within PfGW456L13_4072at 4570.891 kb on - strand, within PfGW456L13_4072at 4570.891 kb on - strand, within PfGW456L13_4072at 4570.891 kb on - strand, within PfGW456L13_4072at 4570.962 kb on + strand, within PfGW456L13_4072at 4570.963 kb on - strand, within PfGW456L13_4072at 4571.046 kb on + strand, within PfGW456L13_4072at 4571.047 kb on - strand, within PfGW456L13_4072at 4571.218 kb on + strand, within PfGW456L13_4072at 4571.218 kb on + strand, within PfGW456L13_4072at 4571.218 kb on + strand, within PfGW456L13_4072at 4571.219 kb on - strand, within PfGW456L13_4072at 4571.219 kb on - strand, within PfGW456L13_4072at 4571.219 kb on - strand, within PfGW456L13_4072at 4571.219 kb on - strand, within PfGW456L13_4072at 4571.219 kb on - strand, within PfGW456L13_4072at 4571.219 kb on - strand, within PfGW456L13_4072at 4571.219 kb on - strand, within PfGW456L13_4072at 4571.219 kb on - strand, within PfGW456L13_4072at 4571.219 kb on - strand, within PfGW456L13_4072at 4571.255 kb on + strandat 4571.255 kb on + strandat 4571.255 kb on + strandat 4571.256 kb on - strandat 4571.256 kb on - strandat 4571.256 kb on - strandat 4571.292 kb on + strandat 4571.292 kb on + strandat 4571.292 kb on + strandat 4571.292 kb on + strandat 4571.292 kb on + strandat 4571.292 kb on + strandat 4571.292 kb on + strandat 4571.292 kb on + strandat 4571.293 kb on - strandat 4571.293 kb on - strandat 4571.293 kb on - strandat 4571.293 kb on - strandat 4571.293 kb on - strandat 4571.293 kb on - strandat 4571.517 kb on - strandat 4571.546 kb on + strandat 4571.546 kb on + strandat 4571.547 kb on - strandat 4571.547 kb on - strandat 4571.547 kb on - strandat 4571.675 kb on + strand, within PfGW456L13_4073at 4571.675 kb on + strand, within PfGW456L13_4073at 4571.676 kb on - strand, within PfGW456L13_4073at 4571.676 kb on - strand, within PfGW456L13_4073at 4571.989 kb on + strand, within PfGW456L13_4073at 4571.990 kb on - strand, within PfGW456L13_4073at 4572.022 kb on + strand, within PfGW456L13_4073at 4572.022 kb on + strand, within PfGW456L13_4073at 4572.023 kb on - strand, within PfGW456L13_4073at 4572.023 kb on - strand, within PfGW456L13_4073at 4572.023 kb on - strand, within PfGW456L13_4073at 4572.074 kb on + strand, within PfGW456L13_4073at 4572.074 kb on + strand, within PfGW456L13_4073at 4572.075 kb on - strand, within PfGW456L13_4073

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
remove
4,569,796 + +0.3
4,569,838 + -0.6
4,569,839 - +0.5
4,569,839 - -0.4
4,569,839 - +0.3
4,569,839 - -0.0
4,569,851 + -0.7
4,569,851 + +0.1
4,569,851 + -0.2
4,569,852 - +0.4
4,569,852 - +0.9
4,569,852 - +1.1
4,569,878 + +1.0
4,569,878 + +0.9
4,569,878 + +0.3
4,569,878 + +0.4
4,569,878 + +0.5
4,569,879 - +0.3
4,569,879 - -0.3
4,569,888 + -0.2
4,569,894 + +0.3
4,569,894 + +1.1
4,569,902 - -0.9
4,569,902 - -1.4
4,569,945 - -0.3
4,569,960 + +0.1
4,569,961 - +0.5
4,569,961 - +0.6
4,569,961 - +1.1
4,570,104 + PfGW456L13_4071 0.24 -1.4
4,570,105 - PfGW456L13_4071 0.24 -1.3
4,570,121 - PfGW456L13_4071 0.26 +0.9
4,570,522 + PfGW456L13_4071 0.80 +0.2
4,570,522 + PfGW456L13_4071 0.80 +1.2
4,570,522 + PfGW456L13_4071 0.80 +0.4
4,570,523 - PfGW456L13_4071 0.81 +1.1
4,570,523 - PfGW456L13_4071 0.81 -0.1
4,570,523 - PfGW456L13_4071 0.81 +1.0
4,570,523 - PfGW456L13_4071 0.81 -1.0
4,570,708 + -0.5
4,570,708 + -0.7
4,570,708 + -1.3
4,570,708 + -0.1
4,570,708 + -0.4
4,570,709 - +0.3
4,570,709 - +1.3
4,570,709 - +0.7
4,570,709 - -1.2
4,570,890 + PfGW456L13_4072 0.26 +1.2
4,570,890 + PfGW456L13_4072 0.26 +1.0
4,570,891 - PfGW456L13_4072 0.26 +0.0
4,570,891 - PfGW456L13_4072 0.26 +1.9
4,570,891 - PfGW456L13_4072 0.26 +0.7
4,570,962 + PfGW456L13_4072 0.39 +1.0
4,570,963 - PfGW456L13_4072 0.40 -0.4
4,571,046 + PfGW456L13_4072 0.55 +1.5
4,571,047 - PfGW456L13_4072 0.55 -0.9
4,571,218 + PfGW456L13_4072 0.86 +1.1
4,571,218 + PfGW456L13_4072 0.86 -0.5
4,571,218 + PfGW456L13_4072 0.86 -0.3
4,571,219 - PfGW456L13_4072 0.86 +0.7
4,571,219 - PfGW456L13_4072 0.86 -0.0
4,571,219 - PfGW456L13_4072 0.86 +2.0
4,571,219 - PfGW456L13_4072 0.86 +0.3
4,571,219 - PfGW456L13_4072 0.86 +0.2
4,571,219 - PfGW456L13_4072 0.86 -0.3
4,571,219 - PfGW456L13_4072 0.86 +0.1
4,571,219 - PfGW456L13_4072 0.86 -0.0
4,571,219 - PfGW456L13_4072 0.86 +0.2
4,571,255 + +0.1
4,571,255 + +0.4
4,571,255 + +0.5
4,571,256 - -0.3
4,571,256 - +0.7
4,571,256 - +1.1
4,571,292 + -0.0
4,571,292 + +2.1
4,571,292 + -0.2
4,571,292 + -0.4
4,571,292 + +0.4
4,571,292 + -0.0
4,571,292 + +0.6
4,571,292 + -0.4
4,571,293 - +0.3
4,571,293 - -0.6
4,571,293 - -0.7
4,571,293 - +0.4
4,571,293 - -0.5
4,571,293 - +0.0
4,571,517 - +0.7
4,571,546 + +0.7
4,571,546 + -0.6
4,571,547 - +0.3
4,571,547 - +1.0
4,571,547 - +0.7
4,571,675 + PfGW456L13_4073 0.21 +0.2
4,571,675 + PfGW456L13_4073 0.21 -0.7
4,571,676 - PfGW456L13_4073 0.21 +0.3
4,571,676 - PfGW456L13_4073 0.21 -0.0
4,571,989 + PfGW456L13_4073 0.48 +0.2
4,571,990 - PfGW456L13_4073 0.48 +0.3
4,572,022 + PfGW456L13_4073 0.51 +0.4
4,572,022 + PfGW456L13_4073 0.51 +0.2
4,572,023 - PfGW456L13_4073 0.51 +0.8
4,572,023 - PfGW456L13_4073 0.51 +2.2
4,572,023 - PfGW456L13_4073 0.51 -0.6
4,572,074 + PfGW456L13_4073 0.56 -0.2
4,572,074 + PfGW456L13_4073 0.56 +0.1
4,572,075 - PfGW456L13_4073 0.56 -0.1

Or see this region's nucleotide sequence