Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3997

Experiment: Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3996 and PfGW456L13_3997 are separated by 161 nucleotidesPfGW456L13_3997 and PfGW456L13_3998 overlap by 47 nucleotides PfGW456L13_3996 - UDP-glucose dehydrogenase (EC 1.1.1.22), at 4,484,547 to 4,485,815 _3996 PfGW456L13_3997 - hypothetical protein, at 4,485,977 to 4,487,410 _3997 PfGW456L13_3998 - membrane protein, putative, at 4,487,364 to 4,488,539 _3998 Position (kb) 4485 4486 4487 4488Strain fitness (log2 ratio) -1 0 1at 4485.028 kb on + strand, within PfGW456L13_3996at 4485.092 kb on + strand, within PfGW456L13_3996at 4485.397 kb on + strandat 4485.429 kb on - strand, within PfGW456L13_3996at 4485.446 kb on - strandat 4485.673 kb on + strand, within PfGW456L13_3996at 4485.737 kb on + strandat 4486.076 kb on + strandat 4486.248 kb on - strand, within PfGW456L13_3997at 4486.504 kb on - strand, within PfGW456L13_3997at 4486.507 kb on - strand, within PfGW456L13_3997at 4486.777 kb on - strand, within PfGW456L13_3997at 4486.825 kb on - strand, within PfGW456L13_3997at 4486.951 kb on + strand, within PfGW456L13_3997at 4487.005 kb on + strand, within PfGW456L13_3997at 4487.005 kb on + strand, within PfGW456L13_3997at 4487.162 kb on - strand, within PfGW456L13_3997at 4487.194 kb on + strand, within PfGW456L13_3997at 4487.195 kb on - strand, within PfGW456L13_3997at 4487.262 kb on + strand, within PfGW456L13_3997at 4487.269 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
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4,485,028 + PfGW456L13_3996 0.38 -0.5
4,485,092 + PfGW456L13_3996 0.43 -1.1
4,485,397 + -0.3
4,485,429 - PfGW456L13_3996 0.70 +0.1
4,485,446 - +1.3
4,485,673 + PfGW456L13_3996 0.89 +0.1
4,485,737 + -0.1
4,486,076 + +0.0
4,486,248 - PfGW456L13_3997 0.19 +0.3
4,486,504 - PfGW456L13_3997 0.37 +0.4
4,486,507 - PfGW456L13_3997 0.37 +0.1
4,486,777 - PfGW456L13_3997 0.56 +0.1
4,486,825 - PfGW456L13_3997 0.59 +1.0
4,486,951 + PfGW456L13_3997 0.68 +0.7
4,487,005 + PfGW456L13_3997 0.72 +1.0
4,487,005 + PfGW456L13_3997 0.72 -0.0
4,487,162 - PfGW456L13_3997 0.83 -0.3
4,487,194 + PfGW456L13_3997 0.85 +1.3
4,487,195 - PfGW456L13_3997 0.85 +0.7
4,487,262 + PfGW456L13_3997 0.90 -0.7
4,487,269 + -0.8

Or see this region's nucleotide sequence