Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3990

Experiment: Zinc 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_3990 and PfGW456L13_3991 are separated by 601 nucleotides PfGW456L13_3990 - Response regulator receiver domain protein (CheY), at 4,476,414 to 4,476,896 _3990 PfGW456L13_3991 - Capsular polysaccharide biosynthesis protein, at 4,477,498 to 4,478,643 _3991 Position (kb) 4476 4477Strain fitness (log2 ratio) -2 -1 0 1 2at 4475.431 kb on + strandat 4475.431 kb on + strandat 4475.477 kb on + strandat 4475.477 kb on + strandat 4475.477 kb on + strandat 4475.477 kb on + strandat 4475.478 kb on - strandat 4475.538 kb on + strandat 4475.539 kb on - strandat 4475.600 kb on + strandat 4475.611 kb on - strandat 4475.611 kb on - strandat 4475.676 kb on - strandat 4475.680 kb on - strandat 4475.680 kb on - strandat 4475.680 kb on - strandat 4475.680 kb on - strandat 4475.745 kb on + strandat 4475.805 kb on + strandat 4475.806 kb on - strandat 4475.859 kb on - strandat 4475.956 kb on + strandat 4476.016 kb on - strandat 4476.073 kb on + strandat 4476.076 kb on - strandat 4476.076 kb on - strandat 4476.107 kb on - strandat 4476.107 kb on - strandat 4476.109 kb on - strandat 4476.109 kb on - strandat 4476.135 kb on - strandat 4476.216 kb on - strandat 4476.271 kb on + strandat 4476.277 kb on + strandat 4476.277 kb on + strandat 4476.278 kb on - strandat 4476.278 kb on - strandat 4476.310 kb on - strandat 4476.311 kb on + strandat 4476.312 kb on - strandat 4476.346 kb on - strandat 4476.383 kb on + strandat 4476.503 kb on + strand, within PfGW456L13_3990at 4476.503 kb on + strand, within PfGW456L13_3990at 4476.504 kb on - strand, within PfGW456L13_3990at 4476.788 kb on - strand, within PfGW456L13_3990at 4476.794 kb on + strand, within PfGW456L13_3990at 4476.801 kb on - strand, within PfGW456L13_3990at 4477.180 kb on + strandat 4477.248 kb on + strandat 4477.249 kb on - strandat 4477.249 kb on - strandat 4477.347 kb on - strandat 4477.352 kb on + strandat 4477.360 kb on + strandat 4477.361 kb on - strandat 4477.388 kb on - strandat 4477.388 kb on - strandat 4477.410 kb on + strandat 4477.411 kb on - strandat 4477.411 kb on - strandat 4477.437 kb on + strandat 4477.437 kb on + strandat 4477.437 kb on + strandat 4477.437 kb on + strandat 4477.437 kb on + strandat 4477.437 kb on + strandat 4477.437 kb on + strandat 4477.438 kb on - strandat 4477.438 kb on - strandat 4477.438 kb on - strandat 4477.438 kb on - strandat 4477.453 kb on + strandat 4477.487 kb on + strandat 4477.487 kb on + strandat 4477.487 kb on + strandat 4477.488 kb on - strandat 4477.494 kb on - strandat 4477.530 kb on + strandat 4477.530 kb on + strandat 4477.531 kb on - strandat 4477.531 kb on - strandat 4477.549 kb on - strandat 4477.587 kb on - strandat 4477.587 kb on - strandat 4477.587 kb on - strandat 4477.604 kb on - strandat 4477.624 kb on + strand, within PfGW456L13_3991at 4477.624 kb on + strand, within PfGW456L13_3991at 4477.624 kb on + strand, within PfGW456L13_3991at 4477.625 kb on - strand, within PfGW456L13_3991at 4477.625 kb on - strand, within PfGW456L13_3991at 4477.625 kb on - strand, within PfGW456L13_3991at 4477.625 kb on - strand, within PfGW456L13_3991at 4477.625 kb on - strand, within PfGW456L13_3991at 4477.652 kb on - strand, within PfGW456L13_3991at 4477.654 kb on + strand, within PfGW456L13_3991at 4477.655 kb on - strand, within PfGW456L13_3991at 4477.655 kb on - strandat 4477.769 kb on + strand, within PfGW456L13_3991at 4477.817 kb on + strand, within PfGW456L13_3991at 4477.818 kb on - strand, within PfGW456L13_3991at 4477.873 kb on + strand, within PfGW456L13_3991at 4477.873 kb on + strand, within PfGW456L13_3991at 4477.874 kb on - strand, within PfGW456L13_3991at 4477.874 kb on - strand, within PfGW456L13_3991at 4477.874 kb on - strand, within PfGW456L13_3991at 4477.874 kb on - strand, within PfGW456L13_3991at 4477.874 kb on - strand, within PfGW456L13_3991at 4477.874 kb on - strand, within PfGW456L13_3991

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
remove
4,475,431 + +0.5
4,475,431 + +1.3
4,475,477 + -0.5
4,475,477 + +0.9
4,475,477 + -0.4
4,475,477 + +0.2
4,475,478 - +1.2
4,475,538 + +0.5
4,475,539 - -0.1
4,475,600 + +0.3
4,475,611 - +0.4
4,475,611 - +1.1
4,475,676 - +1.9
4,475,680 - -0.9
4,475,680 - +1.3
4,475,680 - +0.2
4,475,680 - -0.4
4,475,745 + +0.1
4,475,805 + -0.3
4,475,806 - +0.8
4,475,859 - +1.1
4,475,956 + +0.7
4,476,016 - +0.9
4,476,073 + +0.3
4,476,076 - +1.4
4,476,076 - -0.2
4,476,107 - -0.0
4,476,107 - +0.8
4,476,109 - +1.4
4,476,109 - +0.4
4,476,135 - +0.8
4,476,216 - +0.0
4,476,271 + -0.8
4,476,277 + +0.7
4,476,277 + +0.2
4,476,278 - +1.4
4,476,278 - +0.2
4,476,310 - +1.0
4,476,311 + +0.1
4,476,312 - -0.5
4,476,346 - +1.0
4,476,383 + +1.8
4,476,503 + PfGW456L13_3990 0.18 +1.5
4,476,503 + PfGW456L13_3990 0.18 +0.8
4,476,504 - PfGW456L13_3990 0.19 +1.1
4,476,788 - PfGW456L13_3990 0.77 +1.2
4,476,794 + PfGW456L13_3990 0.79 +0.3
4,476,801 - PfGW456L13_3990 0.80 -0.5
4,477,180 + -0.3
4,477,248 + -0.5
4,477,249 - +0.3
4,477,249 - +0.0
4,477,347 - +0.1
4,477,352 + +0.5
4,477,360 + +1.4
4,477,361 - +1.0
4,477,388 - +0.7
4,477,388 - -0.3
4,477,410 + +0.7
4,477,411 - +0.2
4,477,411 - +0.9
4,477,437 + +0.7
4,477,437 + -1.3
4,477,437 + -0.1
4,477,437 + -0.2
4,477,437 + -1.0
4,477,437 + +0.7
4,477,437 + +0.9
4,477,438 - -0.1
4,477,438 - +0.0
4,477,438 - +0.7
4,477,438 - +0.8
4,477,453 + +0.7
4,477,487 + +0.7
4,477,487 + +0.5
4,477,487 + +0.7
4,477,488 - -0.3
4,477,494 - +0.3
4,477,530 + +0.8
4,477,530 + +1.4
4,477,531 - -0.5
4,477,531 - +0.7
4,477,549 - -2.3
4,477,587 - +0.8
4,477,587 - -0.0
4,477,587 - +1.3
4,477,604 - -2.2
4,477,624 + PfGW456L13_3991 0.11 -0.3
4,477,624 + PfGW456L13_3991 0.11 +0.2
4,477,624 + PfGW456L13_3991 0.11 +0.6
4,477,625 - PfGW456L13_3991 0.11 -1.3
4,477,625 - PfGW456L13_3991 0.11 +0.7
4,477,625 - PfGW456L13_3991 0.11 +0.6
4,477,625 - PfGW456L13_3991 0.11 +1.1
4,477,625 - PfGW456L13_3991 0.11 -0.5
4,477,652 - PfGW456L13_3991 0.13 -0.2
4,477,654 + PfGW456L13_3991 0.14 -0.0
4,477,655 - PfGW456L13_3991 0.14 -0.3
4,477,655 - +0.7
4,477,769 + PfGW456L13_3991 0.24 -0.3
4,477,817 + PfGW456L13_3991 0.28 -0.5
4,477,818 - PfGW456L13_3991 0.28 -0.0
4,477,873 + PfGW456L13_3991 0.33 +0.8
4,477,873 + PfGW456L13_3991 0.33 -0.1
4,477,874 - PfGW456L13_3991 0.33 +0.4
4,477,874 - PfGW456L13_3991 0.33 +0.7
4,477,874 - PfGW456L13_3991 0.33 -0.5
4,477,874 - PfGW456L13_3991 0.33 +0.6
4,477,874 - PfGW456L13_3991 0.33 -0.3
4,477,874 - PfGW456L13_3991 0.33 -0.9

Or see this region's nucleotide sequence