Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_392

Experiment: Zinc 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_389 and PfGW456L13_390 overlap by 4 nucleotidesPfGW456L13_390 and PfGW456L13_391 are separated by 218 nucleotidesPfGW456L13_391 and PfGW456L13_392 overlap by 11 nucleotidesPfGW456L13_392 and PfGW456L13_393 are separated by 237 nucleotides PfGW456L13_389 - 2-hydroxychromene-2-carboxylate isomerase/DsbA-like thioredoxin domain, at 449,361 to 450,017 _389 PfGW456L13_390 - 4-oxalocrotonate tautomerase (EC 5.3.2.-), at 450,014 to 450,235 _390 PfGW456L13_391 - Helix-turn-helix motif, at 450,454 to 450,738 _391 PfGW456L13_392 - FIG00459469: hypothetical protein, at 450,728 to 451,051 _392 PfGW456L13_393 - Outer membrane porin, OprD family, at 451,289 to 452,575 _393 Position (kb) 450 451 452Strain fitness (log2 ratio) -2 -1 0 1at 449.822 kb on - strand, within PfGW456L13_389at 449.822 kb on - strand, within PfGW456L13_389at 449.893 kb on + strand, within PfGW456L13_389at 449.893 kb on + strand, within PfGW456L13_389at 449.893 kb on + strand, within PfGW456L13_389at 449.893 kb on + strand, within PfGW456L13_389at 449.894 kb on - strand, within PfGW456L13_389at 449.894 kb on - strand, within PfGW456L13_389at 449.894 kb on - strand, within PfGW456L13_389at 450.075 kb on + strand, within PfGW456L13_390at 450.075 kb on + strand, within PfGW456L13_390at 450.085 kb on + strand, within PfGW456L13_390at 450.196 kb on + strand, within PfGW456L13_390at 450.197 kb on - strand, within PfGW456L13_390at 450.218 kb on + strandat 450.219 kb on - strandat 450.224 kb on + strandat 450.294 kb on + strandat 450.294 kb on + strandat 450.295 kb on - strandat 450.295 kb on - strandat 450.339 kb on + strandat 450.343 kb on + strandat 450.343 kb on + strandat 450.343 kb on + strandat 450.344 kb on - strandat 450.344 kb on - strandat 450.344 kb on - strandat 450.344 kb on - strandat 450.344 kb on - strandat 450.344 kb on - strandat 450.352 kb on + strandat 450.352 kb on + strandat 450.353 kb on - strandat 450.373 kb on + strandat 450.373 kb on + strandat 450.374 kb on - strandat 450.374 kb on - strandat 450.380 kb on + strandat 450.455 kb on + strandat 450.846 kb on + strand, within PfGW456L13_392at 450.846 kb on + strand, within PfGW456L13_392at 450.846 kb on + strand, within PfGW456L13_392at 450.847 kb on - strand, within PfGW456L13_392at 450.847 kb on - strand, within PfGW456L13_392at 450.847 kb on - strand, within PfGW456L13_392at 450.847 kb on - strand, within PfGW456L13_392at 450.847 kb on - strand, within PfGW456L13_392at 450.847 kb on - strand, within PfGW456L13_392at 450.847 kb on - strand, within PfGW456L13_392at 450.847 kb on - strand, within PfGW456L13_392at 450.847 kb on - strand, within PfGW456L13_392at 450.849 kb on + strand, within PfGW456L13_392at 450.849 kb on + strand, within PfGW456L13_392at 450.964 kb on + strand, within PfGW456L13_392at 450.964 kb on + strand, within PfGW456L13_392at 451.097 kb on + strandat 451.097 kb on + strandat 451.097 kb on + strandat 451.097 kb on + strandat 451.097 kb on + strandat 451.097 kb on + strandat 451.098 kb on - strandat 451.098 kb on - strandat 451.098 kb on - strandat 451.309 kb on - strandat 451.348 kb on - strandat 451.348 kb on - strandat 451.431 kb on + strand, within PfGW456L13_393at 451.431 kb on + strand, within PfGW456L13_393at 451.431 kb on + strand, within PfGW456L13_393at 451.431 kb on + strand, within PfGW456L13_393at 451.431 kb on + strand, within PfGW456L13_393at 451.432 kb on - strand, within PfGW456L13_393at 451.432 kb on - strand, within PfGW456L13_393at 451.432 kb on - strand, within PfGW456L13_393at 451.432 kb on - strand, within PfGW456L13_393at 451.432 kb on - strand, within PfGW456L13_393at 451.432 kb on - strand, within PfGW456L13_393at 451.432 kb on - strand, within PfGW456L13_393at 451.483 kb on + strand, within PfGW456L13_393at 451.484 kb on - strand, within PfGW456L13_393at 451.484 kb on - strand, within PfGW456L13_393at 451.484 kb on - strand, within PfGW456L13_393at 451.484 kb on - strand, within PfGW456L13_393at 451.484 kb on - strand, within PfGW456L13_393at 451.506 kb on + strand, within PfGW456L13_393at 451.506 kb on + strand, within PfGW456L13_393at 451.506 kb on + strand, within PfGW456L13_393at 451.506 kb on + strand, within PfGW456L13_393at 451.506 kb on + strand, within PfGW456L13_393at 451.507 kb on - strand, within PfGW456L13_393at 451.507 kb on - strand, within PfGW456L13_393at 451.507 kb on - strand, within PfGW456L13_393at 451.507 kb on - strand, within PfGW456L13_393at 451.518 kb on + strand, within PfGW456L13_393at 451.518 kb on + strand, within PfGW456L13_393at 451.519 kb on - strand, within PfGW456L13_393at 451.533 kb on - strand, within PfGW456L13_393at 451.608 kb on + strand, within PfGW456L13_393at 451.608 kb on + strand, within PfGW456L13_393at 451.609 kb on - strand, within PfGW456L13_393at 451.623 kb on + strand, within PfGW456L13_393at 451.623 kb on + strand, within PfGW456L13_393at 451.623 kb on + strand, within PfGW456L13_393at 451.623 kb on + strand, within PfGW456L13_393at 451.623 kb on + strand, within PfGW456L13_393at 451.623 kb on + strand, within PfGW456L13_393at 451.624 kb on - strand, within PfGW456L13_393at 451.624 kb on - strand, within PfGW456L13_393at 451.624 kb on - strand, within PfGW456L13_393at 451.624 kb on - strand, within PfGW456L13_393at 451.624 kb on - strand, within PfGW456L13_393at 451.624 kb on - strand, within PfGW456L13_393at 451.624 kb on - strand, within PfGW456L13_393at 451.669 kb on - strand, within PfGW456L13_393at 451.684 kb on - strand, within PfGW456L13_393at 451.792 kb on + strand, within PfGW456L13_393at 451.809 kb on + strand, within PfGW456L13_393at 451.809 kb on + strand, within PfGW456L13_393at 451.810 kb on - strand, within PfGW456L13_393at 451.884 kb on + strand, within PfGW456L13_393at 451.884 kb on + strand, within PfGW456L13_393at 451.884 kb on + strand, within PfGW456L13_393at 451.884 kb on + strand, within PfGW456L13_393at 451.884 kb on + strand, within PfGW456L13_393at 451.884 kb on + strand, within PfGW456L13_393at 451.884 kb on + strand, within PfGW456L13_393at 451.884 kb on + strand, within PfGW456L13_393at 451.884 kb on + strand, within PfGW456L13_393at 451.885 kb on - strand, within PfGW456L13_393at 451.885 kb on - strand, within PfGW456L13_393at 451.885 kb on - strand, within PfGW456L13_393at 451.885 kb on - strand, within PfGW456L13_393at 451.885 kb on - strand, within PfGW456L13_393at 451.885 kb on - strand, within PfGW456L13_393at 451.885 kb on - strand, within PfGW456L13_393at 451.885 kb on - strand, within PfGW456L13_393at 451.885 kb on - strand, within PfGW456L13_393at 451.885 kb on - strand, within PfGW456L13_393at 451.899 kb on + strand, within PfGW456L13_393at 451.899 kb on + strand, within PfGW456L13_393at 451.899 kb on + strand, within PfGW456L13_393at 451.899 kb on + strand, within PfGW456L13_393at 451.900 kb on - strand, within PfGW456L13_393at 451.900 kb on - strand, within PfGW456L13_393at 451.900 kb on - strand, within PfGW456L13_393at 451.900 kb on - strand, within PfGW456L13_393at 451.935 kb on + strand, within PfGW456L13_393at 451.935 kb on + strand, within PfGW456L13_393at 451.936 kb on - strand, within PfGW456L13_393at 451.968 kb on + strand, within PfGW456L13_393at 451.968 kb on + strand, within PfGW456L13_393at 451.969 kb on - strand, within PfGW456L13_393at 451.972 kb on + strand, within PfGW456L13_393at 451.972 kb on + strand, within PfGW456L13_393at 451.973 kb on - strand, within PfGW456L13_393at 451.973 kb on - strand, within PfGW456L13_393at 451.973 kb on - strand, within PfGW456L13_393

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
remove
449,822 - PfGW456L13_389 0.70 +0.8
449,822 - PfGW456L13_389 0.70 -0.4
449,893 + PfGW456L13_389 0.81 +0.3
449,893 + PfGW456L13_389 0.81 -0.6
449,893 + PfGW456L13_389 0.81 +0.7
449,893 + PfGW456L13_389 0.81 -0.0
449,894 - PfGW456L13_389 0.81 +0.4
449,894 - PfGW456L13_389 0.81 +0.2
449,894 - PfGW456L13_389 0.81 +1.3
450,075 + PfGW456L13_390 0.27 -0.6
450,075 + PfGW456L13_390 0.27 +0.5
450,085 + PfGW456L13_390 0.32 +0.9
450,196 + PfGW456L13_390 0.82 -0.6
450,197 - PfGW456L13_390 0.82 +0.4
450,218 + -0.4
450,219 - -0.6
450,224 + -1.0
450,294 + +0.1
450,294 + +0.3
450,295 - +1.4
450,295 - -0.4
450,339 + +0.6
450,343 + -0.3
450,343 + +0.0
450,343 + +0.4
450,344 - +1.2
450,344 - +0.4
450,344 - +0.7
450,344 - +1.1
450,344 - +1.2
450,344 - +0.2
450,352 + -0.5
450,352 + -0.8
450,353 - -1.0
450,373 + +0.8
450,373 + -0.0
450,374 - +0.8
450,374 - +0.2
450,380 + +0.5
450,455 + +0.5
450,846 + PfGW456L13_392 0.36 +0.3
450,846 + PfGW456L13_392 0.36 +0.2
450,846 + PfGW456L13_392 0.36 +0.6
450,847 - PfGW456L13_392 0.37 +0.4
450,847 - PfGW456L13_392 0.37 +0.7
450,847 - PfGW456L13_392 0.37 +0.1
450,847 - PfGW456L13_392 0.37 +0.7
450,847 - PfGW456L13_392 0.37 +0.6
450,847 - PfGW456L13_392 0.37 -0.0
450,847 - PfGW456L13_392 0.37 +0.7
450,847 - PfGW456L13_392 0.37 +0.6
450,847 - PfGW456L13_392 0.37 +0.4
450,849 + PfGW456L13_392 0.37 +0.6
450,849 + PfGW456L13_392 0.37 +0.4
450,964 + PfGW456L13_392 0.73 +0.2
450,964 + PfGW456L13_392 0.73 -0.1
451,097 + -0.3
451,097 + -0.3
451,097 + +0.8
451,097 + +1.6
451,097 + +0.2
451,097 + -2.7
451,098 - -0.0
451,098 - -0.7
451,098 - +0.3
451,309 - +0.2
451,348 - +0.3
451,348 - -2.3
451,431 + PfGW456L13_393 0.11 +0.8
451,431 + PfGW456L13_393 0.11 -0.4
451,431 + PfGW456L13_393 0.11 -0.7
451,431 + PfGW456L13_393 0.11 -0.4
451,431 + PfGW456L13_393 0.11 +0.9
451,432 - PfGW456L13_393 0.11 -0.2
451,432 - PfGW456L13_393 0.11 +1.0
451,432 - PfGW456L13_393 0.11 -0.4
451,432 - PfGW456L13_393 0.11 -0.3
451,432 - PfGW456L13_393 0.11 -0.2
451,432 - PfGW456L13_393 0.11 +0.1
451,432 - PfGW456L13_393 0.11 -0.5
451,483 + PfGW456L13_393 0.15 -0.4
451,484 - PfGW456L13_393 0.15 +0.2
451,484 - PfGW456L13_393 0.15 -1.3
451,484 - PfGW456L13_393 0.15 +0.7
451,484 - PfGW456L13_393 0.15 -0.1
451,484 - PfGW456L13_393 0.15 +0.9
451,506 + PfGW456L13_393 0.17 -1.2
451,506 + PfGW456L13_393 0.17 -0.4
451,506 + PfGW456L13_393 0.17 -1.3
451,506 + PfGW456L13_393 0.17 -0.6
451,506 + PfGW456L13_393 0.17 -0.4
451,507 - PfGW456L13_393 0.17 +0.5
451,507 - PfGW456L13_393 0.17 +0.0
451,507 - PfGW456L13_393 0.17 +0.0
451,507 - PfGW456L13_393 0.17 +0.0
451,518 + PfGW456L13_393 0.18 -0.4
451,518 + PfGW456L13_393 0.18 +0.8
451,519 - PfGW456L13_393 0.18 -0.0
451,533 - PfGW456L13_393 0.19 -0.0
451,608 + PfGW456L13_393 0.25 +0.6
451,608 + PfGW456L13_393 0.25 -1.4
451,609 - PfGW456L13_393 0.25 +0.4
451,623 + PfGW456L13_393 0.26 +0.1
451,623 + PfGW456L13_393 0.26 -0.1
451,623 + PfGW456L13_393 0.26 +0.1
451,623 + PfGW456L13_393 0.26 -1.0
451,623 + PfGW456L13_393 0.26 +0.6
451,623 + PfGW456L13_393 0.26 +1.0
451,624 - PfGW456L13_393 0.26 -0.7
451,624 - PfGW456L13_393 0.26 +0.6
451,624 - PfGW456L13_393 0.26 +0.5
451,624 - PfGW456L13_393 0.26 -1.4
451,624 - PfGW456L13_393 0.26 +0.1
451,624 - PfGW456L13_393 0.26 +1.2
451,624 - PfGW456L13_393 0.26 +0.6
451,669 - PfGW456L13_393 0.30 -0.8
451,684 - PfGW456L13_393 0.31 +0.1
451,792 + PfGW456L13_393 0.39 -0.2
451,809 + PfGW456L13_393 0.40 +0.2
451,809 + PfGW456L13_393 0.40 -0.3
451,810 - PfGW456L13_393 0.40 +0.3
451,884 + PfGW456L13_393 0.46 +0.2
451,884 + PfGW456L13_393 0.46 -0.4
451,884 + PfGW456L13_393 0.46 -0.2
451,884 + PfGW456L13_393 0.46 -0.5
451,884 + PfGW456L13_393 0.46 +0.5
451,884 + PfGW456L13_393 0.46 -0.7
451,884 + PfGW456L13_393 0.46 +0.7
451,884 + PfGW456L13_393 0.46 +0.4
451,884 + PfGW456L13_393 0.46 +0.2
451,885 - PfGW456L13_393 0.46 -0.5
451,885 - PfGW456L13_393 0.46 -0.4
451,885 - PfGW456L13_393 0.46 +0.0
451,885 - PfGW456L13_393 0.46 +0.3
451,885 - PfGW456L13_393 0.46 +0.8
451,885 - PfGW456L13_393 0.46 +0.0
451,885 - PfGW456L13_393 0.46 -0.7
451,885 - PfGW456L13_393 0.46 +0.8
451,885 - PfGW456L13_393 0.46 +0.0
451,885 - PfGW456L13_393 0.46 -0.8
451,899 + PfGW456L13_393 0.47 +1.1
451,899 + PfGW456L13_393 0.47 +0.7
451,899 + PfGW456L13_393 0.47 -0.5
451,899 + PfGW456L13_393 0.47 +0.7
451,900 - PfGW456L13_393 0.47 -0.4
451,900 - PfGW456L13_393 0.47 -1.4
451,900 - PfGW456L13_393 0.47 -0.3
451,900 - PfGW456L13_393 0.47 -0.3
451,935 + PfGW456L13_393 0.50 +1.2
451,935 + PfGW456L13_393 0.50 +1.2
451,936 - PfGW456L13_393 0.50 +0.6
451,968 + PfGW456L13_393 0.53 +0.3
451,968 + PfGW456L13_393 0.53 +0.1
451,969 - PfGW456L13_393 0.53 +0.5
451,972 + PfGW456L13_393 0.53 -0.7
451,972 + PfGW456L13_393 0.53 -0.2
451,973 - PfGW456L13_393 0.53 +0.3
451,973 - PfGW456L13_393 0.53 +0.6
451,973 - PfGW456L13_393 0.53 +0.6

Or see this region's nucleotide sequence