Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3846

Experiment: Zinc 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_3844 and PfGW456L13_3845 overlap by 14 nucleotidesPfGW456L13_3845 and PfGW456L13_3846 are separated by 13 nucleotidesPfGW456L13_3846 and PfGW456L13_3847 overlap by 20 nucleotides PfGW456L13_3844 - Predicted secretion system X transmembrane protein 2, at 4,308,270 to 4,308,818 _3844 PfGW456L13_3845 - Predicted secretion system X transmembrane protein 1, at 4,308,805 to 4,309,338 _3845 PfGW456L13_3846 - Predicted secretion system X FIG084745: hypothetical protein, at 4,309,352 to 4,310,155 _3846 PfGW456L13_3847 - Predicted secretion system X protein GspE-like, at 4,310,136 to 4,311,842 _3847 Position (kb) 4309 4310 4311Strain fitness (log2 ratio) -1 0 1at 4308.426 kb on + strand, within PfGW456L13_3844at 4308.446 kb on - strand, within PfGW456L13_3844at 4308.484 kb on + strand, within PfGW456L13_3844at 4308.484 kb on + strand, within PfGW456L13_3844at 4308.485 kb on - strand, within PfGW456L13_3844at 4308.485 kb on - strand, within PfGW456L13_3844at 4308.485 kb on - strand, within PfGW456L13_3844at 4308.529 kb on + strand, within PfGW456L13_3844at 4308.529 kb on + strand, within PfGW456L13_3844at 4308.530 kb on - strand, within PfGW456L13_3844at 4308.649 kb on + strand, within PfGW456L13_3844at 4308.650 kb on - strand, within PfGW456L13_3844at 4308.724 kb on + strand, within PfGW456L13_3844at 4308.724 kb on + strand, within PfGW456L13_3844at 4308.724 kb on + strand, within PfGW456L13_3844at 4308.725 kb on - strand, within PfGW456L13_3844at 4308.725 kb on - strand, within PfGW456L13_3844at 4308.725 kb on - strand, within PfGW456L13_3844at 4308.787 kb on + strandat 4308.788 kb on - strandat 4308.901 kb on + strand, within PfGW456L13_3845at 4309.377 kb on + strandat 4309.377 kb on + strandat 4309.377 kb on + strandat 4309.378 kb on - strandat 4309.699 kb on - strand, within PfGW456L13_3846at 4309.817 kb on + strand, within PfGW456L13_3846at 4309.849 kb on - strand, within PfGW456L13_3846at 4310.145 kb on - strandat 4310.767 kb on + strand, within PfGW456L13_3847at 4310.768 kb on - strand, within PfGW456L13_3847at 4310.887 kb on + strand, within PfGW456L13_3847at 4310.887 kb on + strand, within PfGW456L13_3847

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
remove
4,308,426 + PfGW456L13_3844 0.28 +0.8
4,308,446 - PfGW456L13_3844 0.32 -0.9
4,308,484 + PfGW456L13_3844 0.39 +0.5
4,308,484 + PfGW456L13_3844 0.39 -0.1
4,308,485 - PfGW456L13_3844 0.39 -0.5
4,308,485 - PfGW456L13_3844 0.39 +0.2
4,308,485 - PfGW456L13_3844 0.39 +0.1
4,308,529 + PfGW456L13_3844 0.47 -1.5
4,308,529 + PfGW456L13_3844 0.47 +0.6
4,308,530 - PfGW456L13_3844 0.47 -1.5
4,308,649 + PfGW456L13_3844 0.69 -0.5
4,308,650 - PfGW456L13_3844 0.69 +0.2
4,308,724 + PfGW456L13_3844 0.83 +0.7
4,308,724 + PfGW456L13_3844 0.83 +0.4
4,308,724 + PfGW456L13_3844 0.83 -0.0
4,308,725 - PfGW456L13_3844 0.83 +1.1
4,308,725 - PfGW456L13_3844 0.83 +0.6
4,308,725 - PfGW456L13_3844 0.83 +0.8
4,308,787 + +0.0
4,308,788 - -1.1
4,308,901 + PfGW456L13_3845 0.18 -0.8
4,309,377 + -0.4
4,309,377 + +0.7
4,309,377 + +1.6
4,309,378 - +0.3
4,309,699 - PfGW456L13_3846 0.43 +0.4
4,309,817 + PfGW456L13_3846 0.58 +0.5
4,309,849 - PfGW456L13_3846 0.62 +1.2
4,310,145 - -0.4
4,310,767 + PfGW456L13_3847 0.37 -0.5
4,310,768 - PfGW456L13_3847 0.37 +0.0
4,310,887 + PfGW456L13_3847 0.44 +0.4
4,310,887 + PfGW456L13_3847 0.44 -0.4

Or see this region's nucleotide sequence