Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3818

Experiment: Zinc 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_3817 and PfGW456L13_3818 are separated by 10 nucleotidesPfGW456L13_3818 and PfGW456L13_3819 overlap by 4 nucleotides PfGW456L13_3817 - Benzoate 1,2-dioxygenase, ferredoxin reductase component, at 4,285,051 to 4,286,064 _3817 PfGW456L13_3818 - Benzoate 1,2-dioxygenase beta subunit (EC 1.14.12.10), at 4,286,075 to 4,286,563 _3818 PfGW456L13_3819 - Benzoate 1,2-dioxygenase alpha subunit (EC 1.14.12.10), at 4,286,560 to 4,287,924 _3819 Position (kb) 4286 4287Strain fitness (log2 ratio) -2 -1 0 1 2at 4285.079 kb on + strandat 4285.080 kb on - strandat 4285.080 kb on - strandat 4285.118 kb on + strandat 4285.118 kb on + strandat 4285.160 kb on + strand, within PfGW456L13_3817at 4285.214 kb on + strand, within PfGW456L13_3817at 4285.214 kb on + strand, within PfGW456L13_3817at 4285.214 kb on + strand, within PfGW456L13_3817at 4285.214 kb on + strand, within PfGW456L13_3817at 4285.214 kb on + strand, within PfGW456L13_3817at 4285.215 kb on - strand, within PfGW456L13_3817at 4285.215 kb on - strand, within PfGW456L13_3817at 4285.460 kb on + strand, within PfGW456L13_3817at 4285.460 kb on + strand, within PfGW456L13_3817at 4285.601 kb on + strand, within PfGW456L13_3817at 4285.643 kb on + strand, within PfGW456L13_3817at 4285.644 kb on - strand, within PfGW456L13_3817at 4285.644 kb on - strand, within PfGW456L13_3817at 4285.644 kb on - strand, within PfGW456L13_3817at 4285.644 kb on - strand, within PfGW456L13_3817at 4285.745 kb on + strand, within PfGW456L13_3817at 4285.746 kb on - strand, within PfGW456L13_3817at 4285.746 kb on - strand, within PfGW456L13_3817at 4285.746 kb on - strand, within PfGW456L13_3817at 4285.746 kb on - strandat 4285.746 kb on - strand, within PfGW456L13_3817at 4285.877 kb on + strand, within PfGW456L13_3817at 4285.877 kb on + strand, within PfGW456L13_3817at 4285.878 kb on - strand, within PfGW456L13_3817at 4285.878 kb on - strand, within PfGW456L13_3817at 4285.878 kb on - strand, within PfGW456L13_3817at 4285.895 kb on + strand, within PfGW456L13_3817at 4285.895 kb on + strand, within PfGW456L13_3817at 4285.895 kb on + strand, within PfGW456L13_3817at 4285.896 kb on - strand, within PfGW456L13_3817at 4285.896 kb on - strand, within PfGW456L13_3817at 4285.896 kb on - strand, within PfGW456L13_3817at 4285.977 kb on - strandat 4286.085 kb on + strandat 4286.085 kb on + strandat 4286.086 kb on - strandat 4286.109 kb on + strandat 4286.109 kb on + strandat 4286.110 kb on - strandat 4286.110 kb on - strandat 4286.176 kb on - strand, within PfGW456L13_3818at 4286.176 kb on - strand, within PfGW456L13_3818at 4286.193 kb on + strand, within PfGW456L13_3818at 4286.193 kb on + strand, within PfGW456L13_3818at 4286.194 kb on - strand, within PfGW456L13_3818at 4286.212 kb on - strand, within PfGW456L13_3818at 4286.472 kb on + strand, within PfGW456L13_3818at 4286.472 kb on + strand, within PfGW456L13_3818at 4286.550 kb on + strandat 4286.550 kb on + strandat 4286.551 kb on - strandat 4286.633 kb on + strandat 4286.633 kb on + strandat 4286.634 kb on - strandat 4286.786 kb on + strand, within PfGW456L13_3819at 4286.787 kb on - strand, within PfGW456L13_3819at 4286.861 kb on + strand, within PfGW456L13_3819at 4286.862 kb on - strand, within PfGW456L13_3819at 4286.918 kb on + strand, within PfGW456L13_3819at 4286.918 kb on + strand, within PfGW456L13_3819at 4286.918 kb on + strand, within PfGW456L13_3819at 4286.918 kb on + strand, within PfGW456L13_3819at 4286.918 kb on + strand, within PfGW456L13_3819at 4286.919 kb on - strand, within PfGW456L13_3819at 4286.919 kb on - strand, within PfGW456L13_3819at 4286.919 kb on - strand, within PfGW456L13_3819at 4286.993 kb on + strand, within PfGW456L13_3819at 4286.993 kb on + strand, within PfGW456L13_3819at 4286.994 kb on - strand, within PfGW456L13_3819at 4286.994 kb on - strand, within PfGW456L13_3819at 4287.005 kb on + strand, within PfGW456L13_3819at 4287.089 kb on + strand, within PfGW456L13_3819at 4287.090 kb on - strand, within PfGW456L13_3819at 4287.090 kb on - strand, within PfGW456L13_3819at 4287.155 kb on + strand, within PfGW456L13_3819at 4287.155 kb on + strand, within PfGW456L13_3819at 4287.155 kb on + strand, within PfGW456L13_3819at 4287.251 kb on + strand, within PfGW456L13_3819at 4287.251 kb on + strand, within PfGW456L13_3819at 4287.252 kb on - strand, within PfGW456L13_3819at 4287.323 kb on + strand, within PfGW456L13_3819at 4287.323 kb on + strand, within PfGW456L13_3819at 4287.323 kb on + strand, within PfGW456L13_3819at 4287.324 kb on - strand, within PfGW456L13_3819at 4287.324 kb on - strand, within PfGW456L13_3819at 4287.324 kb on - strand, within PfGW456L13_3819at 4287.324 kb on - strand, within PfGW456L13_3819at 4287.329 kb on + strand, within PfGW456L13_3819at 4287.329 kb on + strand, within PfGW456L13_3819at 4287.329 kb on + strand, within PfGW456L13_3819at 4287.329 kb on + strand, within PfGW456L13_3819at 4287.329 kb on + strand, within PfGW456L13_3819at 4287.329 kb on + strand, within PfGW456L13_3819at 4287.330 kb on - strand, within PfGW456L13_3819at 4287.330 kb on - strand, within PfGW456L13_3819at 4287.330 kb on - strand, within PfGW456L13_3819at 4287.330 kb on - strand, within PfGW456L13_3819at 4287.330 kb on - strand, within PfGW456L13_3819at 4287.330 kb on - strand, within PfGW456L13_3819

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
remove
4,285,079 + -1.1
4,285,080 - +0.7
4,285,080 - -0.5
4,285,118 + -0.3
4,285,118 + +0.7
4,285,160 + PfGW456L13_3817 0.11 +1.3
4,285,214 + PfGW456L13_3817 0.16 -0.3
4,285,214 + PfGW456L13_3817 0.16 -0.3
4,285,214 + PfGW456L13_3817 0.16 -1.3
4,285,214 + PfGW456L13_3817 0.16 -0.4
4,285,214 + PfGW456L13_3817 0.16 +0.1
4,285,215 - PfGW456L13_3817 0.16 +0.4
4,285,215 - PfGW456L13_3817 0.16 +0.4
4,285,460 + PfGW456L13_3817 0.40 -0.8
4,285,460 + PfGW456L13_3817 0.40 -0.3
4,285,601 + PfGW456L13_3817 0.54 +0.4
4,285,643 + PfGW456L13_3817 0.58 -0.6
4,285,644 - PfGW456L13_3817 0.58 -0.7
4,285,644 - PfGW456L13_3817 0.58 +1.2
4,285,644 - PfGW456L13_3817 0.58 -1.3
4,285,644 - PfGW456L13_3817 0.58 +0.6
4,285,745 + PfGW456L13_3817 0.68 -0.7
4,285,746 - PfGW456L13_3817 0.69 +0.3
4,285,746 - PfGW456L13_3817 0.69 +0.7
4,285,746 - PfGW456L13_3817 0.69 +1.2
4,285,746 - +2.2
4,285,746 - PfGW456L13_3817 0.69 -0.7
4,285,877 + PfGW456L13_3817 0.81 -1.7
4,285,877 + PfGW456L13_3817 0.81 +0.1
4,285,878 - PfGW456L13_3817 0.82 -0.1
4,285,878 - PfGW456L13_3817 0.82 +0.9
4,285,878 - PfGW456L13_3817 0.82 -1.0
4,285,895 + PfGW456L13_3817 0.83 -0.1
4,285,895 + PfGW456L13_3817 0.83 -0.1
4,285,895 + PfGW456L13_3817 0.83 -0.3
4,285,896 - PfGW456L13_3817 0.83 -0.0
4,285,896 - PfGW456L13_3817 0.83 -0.6
4,285,896 - PfGW456L13_3817 0.83 -0.9
4,285,977 - -1.1
4,286,085 + +0.9
4,286,085 + +0.3
4,286,086 - -0.3
4,286,109 + -0.2
4,286,109 + -0.8
4,286,110 - -0.3
4,286,110 - -0.9
4,286,176 - PfGW456L13_3818 0.21 +0.5
4,286,176 - PfGW456L13_3818 0.21 +0.1
4,286,193 + PfGW456L13_3818 0.24 +0.3
4,286,193 + PfGW456L13_3818 0.24 +0.6
4,286,194 - PfGW456L13_3818 0.24 +0.5
4,286,212 - PfGW456L13_3818 0.28 +1.0
4,286,472 + PfGW456L13_3818 0.81 +0.9
4,286,472 + PfGW456L13_3818 0.81 +0.4
4,286,550 + +0.1
4,286,550 + -0.0
4,286,551 - +0.6
4,286,633 + +0.0
4,286,633 + +0.1
4,286,634 - +1.1
4,286,786 + PfGW456L13_3819 0.17 +0.6
4,286,787 - PfGW456L13_3819 0.17 +0.6
4,286,861 + PfGW456L13_3819 0.22 +0.6
4,286,862 - PfGW456L13_3819 0.22 -0.3
4,286,918 + PfGW456L13_3819 0.26 +1.9
4,286,918 + PfGW456L13_3819 0.26 -0.3
4,286,918 + PfGW456L13_3819 0.26 +0.0
4,286,918 + PfGW456L13_3819 0.26 -0.1
4,286,918 + PfGW456L13_3819 0.26 -0.2
4,286,919 - PfGW456L13_3819 0.26 +0.2
4,286,919 - PfGW456L13_3819 0.26 -0.5
4,286,919 - PfGW456L13_3819 0.26 -0.4
4,286,993 + PfGW456L13_3819 0.32 -1.2
4,286,993 + PfGW456L13_3819 0.32 +0.2
4,286,994 - PfGW456L13_3819 0.32 +0.1
4,286,994 - PfGW456L13_3819 0.32 -0.0
4,287,005 + PfGW456L13_3819 0.33 +0.9
4,287,089 + PfGW456L13_3819 0.39 +0.9
4,287,090 - PfGW456L13_3819 0.39 -1.9
4,287,090 - PfGW456L13_3819 0.39 +0.1
4,287,155 + PfGW456L13_3819 0.44 +0.8
4,287,155 + PfGW456L13_3819 0.44 -0.6
4,287,155 + PfGW456L13_3819 0.44 -1.0
4,287,251 + PfGW456L13_3819 0.51 -0.1
4,287,251 + PfGW456L13_3819 0.51 +0.6
4,287,252 - PfGW456L13_3819 0.51 +0.0
4,287,323 + PfGW456L13_3819 0.56 -1.7
4,287,323 + PfGW456L13_3819 0.56 +0.4
4,287,323 + PfGW456L13_3819 0.56 +0.8
4,287,324 - PfGW456L13_3819 0.56 -0.5
4,287,324 - PfGW456L13_3819 0.56 -2.3
4,287,324 - PfGW456L13_3819 0.56 -2.2
4,287,324 - PfGW456L13_3819 0.56 +0.7
4,287,329 + PfGW456L13_3819 0.56 -0.4
4,287,329 + PfGW456L13_3819 0.56 -0.1
4,287,329 + PfGW456L13_3819 0.56 -0.4
4,287,329 + PfGW456L13_3819 0.56 -0.6
4,287,329 + PfGW456L13_3819 0.56 +0.9
4,287,329 + PfGW456L13_3819 0.56 -0.2
4,287,330 - PfGW456L13_3819 0.56 +0.3
4,287,330 - PfGW456L13_3819 0.56 +0.1
4,287,330 - PfGW456L13_3819 0.56 +0.5
4,287,330 - PfGW456L13_3819 0.56 +0.4
4,287,330 - PfGW456L13_3819 0.56 +0.8
4,287,330 - PfGW456L13_3819 0.56 -0.8

Or see this region's nucleotide sequence