Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3774

Experiment: Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3772 and PfGW456L13_3773 are separated by 1 nucleotidesPfGW456L13_3773 and PfGW456L13_3774 are separated by 156 nucleotidesPfGW456L13_3774 and PfGW456L13_3775 are separated by 595 nucleotides PfGW456L13_3772 - Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone, at 4,245,736 to 4,246,341 _3772 PfGW456L13_3773 - Copper metallochaperone, bacterial analog of Cox17 protein, at 4,246,343 to 4,246,852 _3773 PfGW456L13_3774 - Organic hydroperoxide resistance protein, at 4,247,009 to 4,247,464 _3774 PfGW456L13_3775 - Putrescine/proton symporter, putrescine/ornithine antiporter PotE, at 4,248,060 to 4,249,445 _3775 Position (kb) 4247 4248Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4246.047 kb on + strand, within PfGW456L13_3772at 4246.048 kb on - strand, within PfGW456L13_3772at 4246.099 kb on + strand, within PfGW456L13_3772at 4246.099 kb on + strand, within PfGW456L13_3772at 4246.100 kb on - strand, within PfGW456L13_3772at 4246.100 kb on - strand, within PfGW456L13_3772at 4246.135 kb on + strand, within PfGW456L13_3772at 4246.209 kb on + strandat 4246.209 kb on + strand, within PfGW456L13_3772at 4246.210 kb on - strand, within PfGW456L13_3772at 4246.213 kb on + strand, within PfGW456L13_3772at 4246.213 kb on + strand, within PfGW456L13_3772at 4246.213 kb on + strand, within PfGW456L13_3772at 4246.213 kb on + strand, within PfGW456L13_3772at 4246.213 kb on + strand, within PfGW456L13_3772at 4246.213 kb on + strand, within PfGW456L13_3772at 4246.213 kb on + strand, within PfGW456L13_3772at 4246.213 kb on + strand, within PfGW456L13_3772at 4246.213 kb on + strand, within PfGW456L13_3772at 4246.213 kb on + strand, within PfGW456L13_3772at 4246.213 kb on + strand, within PfGW456L13_3772at 4246.214 kb on - strand, within PfGW456L13_3772at 4246.214 kb on - strand, within PfGW456L13_3772at 4246.214 kb on - strand, within PfGW456L13_3772at 4246.214 kb on - strand, within PfGW456L13_3772at 4246.214 kb on - strand, within PfGW456L13_3772at 4246.214 kb on - strand, within PfGW456L13_3772at 4246.214 kb on - strand, within PfGW456L13_3772at 4246.214 kb on - strand, within PfGW456L13_3772at 4246.214 kb on - strand, within PfGW456L13_3772at 4246.214 kb on - strand, within PfGW456L13_3772at 4246.214 kb on - strand, within PfGW456L13_3772at 4246.214 kb on - strand, within PfGW456L13_3772at 4246.214 kb on - strand, within PfGW456L13_3772at 4246.214 kb on - strand, within PfGW456L13_3772at 4246.216 kb on - strand, within PfGW456L13_3772at 4246.567 kb on - strand, within PfGW456L13_3773at 4246.567 kb on - strand, within PfGW456L13_3773at 4246.567 kb on - strand, within PfGW456L13_3773at 4246.567 kb on - strand, within PfGW456L13_3773at 4246.567 kb on - strand, within PfGW456L13_3773at 4246.988 kb on - strandat 4246.988 kb on - strandat 4246.988 kb on - strandat 4247.068 kb on - strand, within PfGW456L13_3774at 4247.400 kb on + strandat 4247.400 kb on + strand, within PfGW456L13_3774at 4247.401 kb on - strand, within PfGW456L13_3774at 4247.448 kb on - strandat 4247.448 kb on - strandat 4247.494 kb on + strandat 4247.494 kb on + strandat 4247.494 kb on + strandat 4247.494 kb on + strandat 4247.494 kb on + strandat 4247.494 kb on + strandat 4247.494 kb on + strandat 4247.495 kb on - strandat 4247.495 kb on - strandat 4247.495 kb on - strandat 4247.495 kb on - strandat 4247.495 kb on - strandat 4247.495 kb on - strandat 4247.495 kb on - strandat 4247.495 kb on - strandat 4247.496 kb on + strandat 4247.496 kb on + strandat 4247.496 kb on + strandat 4247.496 kb on + strandat 4247.497 kb on - strandat 4247.497 kb on - strandat 4247.497 kb on - strandat 4247.497 kb on - strandat 4247.497 kb on - strandat 4247.497 kb on - strandat 4247.544 kb on + strandat 4247.544 kb on + strandat 4247.544 kb on + strandat 4247.544 kb on + strandat 4247.545 kb on - strandat 4247.545 kb on - strandat 4247.545 kb on - strandat 4247.545 kb on - strandat 4247.549 kb on + strandat 4247.550 kb on - strandat 4247.550 kb on - strandat 4247.550 kb on - strandat 4247.550 kb on - strandat 4247.553 kb on + strandat 4247.554 kb on - strandat 4247.585 kb on + strandat 4247.585 kb on + strandat 4247.586 kb on - strandat 4247.586 kb on - strandat 4247.599 kb on + strandat 4247.633 kb on + strandat 4247.633 kb on + strandat 4247.633 kb on + strandat 4247.633 kb on + strandat 4247.634 kb on - strandat 4247.634 kb on - strandat 4247.634 kb on - strandat 4247.647 kb on - strandat 4247.647 kb on - strandat 4247.647 kb on - strandat 4247.691 kb on - strandat 4247.786 kb on + strandat 4247.786 kb on + strandat 4247.786 kb on + strandat 4247.786 kb on + strandat 4247.786 kb on + strandat 4247.787 kb on - strandat 4247.787 kb on - strandat 4247.787 kb on - strandat 4247.787 kb on - strandat 4247.787 kb on - strandat 4247.787 kb on - strandat 4247.787 kb on - strandat 4247.787 kb on - strandat 4247.787 kb on - strandat 4247.787 kb on - strandat 4247.787 kb on - strandat 4247.830 kb on + strandat 4247.845 kb on + strandat 4247.846 kb on - strandat 4247.846 kb on - strandat 4247.889 kb on + strandat 4247.890 kb on - strandat 4247.893 kb on + strandat 4247.991 kb on - strandat 4248.018 kb on + strandat 4248.024 kb on + strandat 4248.024 kb on + strandat 4248.024 kb on + strandat 4248.025 kb on - strandat 4248.025 kb on - strandat 4248.025 kb on - strandat 4248.025 kb on - strandat 4248.025 kb on - strandat 4248.025 kb on - strandat 4248.025 kb on - strandat 4248.044 kb on + strandat 4248.044 kb on + strandat 4248.044 kb on + strandat 4248.044 kb on + strandat 4248.044 kb on + strandat 4248.045 kb on - strandat 4248.045 kb on - strandat 4248.045 kb on - strandat 4248.285 kb on + strand, within PfGW456L13_3775at 4248.285 kb on + strand, within PfGW456L13_3775at 4248.285 kb on + strand, within PfGW456L13_3775at 4248.286 kb on - strand, within PfGW456L13_3775at 4248.286 kb on - strand, within PfGW456L13_3775at 4248.305 kb on + strand, within PfGW456L13_3775at 4248.305 kb on + strand, within PfGW456L13_3775at 4248.306 kb on - strand, within PfGW456L13_3775at 4248.306 kb on - strand, within PfGW456L13_3775at 4248.306 kb on - strand, within PfGW456L13_3775at 4248.306 kb on - strand, within PfGW456L13_3775at 4248.306 kb on - strand, within PfGW456L13_3775at 4248.309 kb on + strand, within PfGW456L13_3775at 4248.309 kb on + strand, within PfGW456L13_3775at 4248.309 kb on + strand, within PfGW456L13_3775at 4248.309 kb on + strand, within PfGW456L13_3775at 4248.309 kb on + strand, within PfGW456L13_3775at 4248.309 kb on + strand, within PfGW456L13_3775at 4248.309 kb on + strand, within PfGW456L13_3775at 4248.309 kb on + strand, within PfGW456L13_3775at 4248.309 kb on + strand, within PfGW456L13_3775at 4248.309 kb on + strand, within PfGW456L13_3775at 4248.309 kb on + strand, within PfGW456L13_3775at 4248.310 kb on - strand, within PfGW456L13_3775at 4248.310 kb on - strand, within PfGW456L13_3775at 4248.310 kb on - strand, within PfGW456L13_3775at 4248.310 kb on - strand, within PfGW456L13_3775at 4248.310 kb on - strand, within PfGW456L13_3775at 4248.321 kb on + strand, within PfGW456L13_3775at 4248.321 kb on + strand, within PfGW456L13_3775at 4248.321 kb on + strand, within PfGW456L13_3775at 4248.321 kb on + strand, within PfGW456L13_3775at 4248.321 kb on + strand, within PfGW456L13_3775at 4248.321 kb on + strand, within PfGW456L13_3775at 4248.322 kb on - strand, within PfGW456L13_3775at 4248.322 kb on - strand, within PfGW456L13_3775at 4248.322 kb on - strand, within PfGW456L13_3775at 4248.327 kb on + strand, within PfGW456L13_3775at 4248.327 kb on + strand, within PfGW456L13_3775at 4248.328 kb on - strand, within PfGW456L13_3775at 4248.328 kb on - strand, within PfGW456L13_3775at 4248.328 kb on - strand, within PfGW456L13_3775at 4248.365 kb on + strand, within PfGW456L13_3775at 4248.365 kb on + strand, within PfGW456L13_3775at 4248.366 kb on - strand, within PfGW456L13_3775at 4248.368 kb on + strand, within PfGW456L13_3775at 4248.369 kb on - strand, within PfGW456L13_3775at 4248.369 kb on - strand, within PfGW456L13_3775at 4248.369 kb on - strand, within PfGW456L13_3775at 4248.369 kb on - strand, within PfGW456L13_3775at 4248.369 kb on - strand, within PfGW456L13_3775at 4248.381 kb on + strand, within PfGW456L13_3775at 4248.382 kb on - strand, within PfGW456L13_3775at 4248.382 kb on - strand, within PfGW456L13_3775at 4248.383 kb on + strand, within PfGW456L13_3775at 4248.383 kb on + strand, within PfGW456L13_3775at 4248.383 kb on + strand, within PfGW456L13_3775at 4248.404 kb on - strand, within PfGW456L13_3775at 4248.424 kb on + strand, within PfGW456L13_3775at 4248.425 kb on - strandat 4248.425 kb on - strand, within PfGW456L13_3775at 4248.425 kb on - strand, within PfGW456L13_3775at 4248.425 kb on - strand, within PfGW456L13_3775at 4248.425 kb on - strand, within PfGW456L13_3775at 4248.425 kb on - strand, within PfGW456L13_3775

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
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4,246,047 + PfGW456L13_3772 0.51 +0.0
4,246,048 - PfGW456L13_3772 0.51 +0.3
4,246,099 + PfGW456L13_3772 0.60 +0.6
4,246,099 + PfGW456L13_3772 0.60 -0.3
4,246,100 - PfGW456L13_3772 0.60 +0.6
4,246,100 - PfGW456L13_3772 0.60 +0.4
4,246,135 + PfGW456L13_3772 0.66 +0.4
4,246,209 + +0.9
4,246,209 + PfGW456L13_3772 0.78 -0.1
4,246,210 - PfGW456L13_3772 0.78 -0.4
4,246,213 + PfGW456L13_3772 0.79 +0.7
4,246,213 + PfGW456L13_3772 0.79 -0.4
4,246,213 + PfGW456L13_3772 0.79 -0.2
4,246,213 + PfGW456L13_3772 0.79 -0.5
4,246,213 + PfGW456L13_3772 0.79 +0.3
4,246,213 + PfGW456L13_3772 0.79 -0.4
4,246,213 + PfGW456L13_3772 0.79 -0.3
4,246,213 + PfGW456L13_3772 0.79 -0.4
4,246,213 + PfGW456L13_3772 0.79 -0.3
4,246,213 + PfGW456L13_3772 0.79 +0.2
4,246,213 + PfGW456L13_3772 0.79 +0.0
4,246,214 - PfGW456L13_3772 0.79 -0.6
4,246,214 - PfGW456L13_3772 0.79 +0.2
4,246,214 - PfGW456L13_3772 0.79 +0.5
4,246,214 - PfGW456L13_3772 0.79 +0.1
4,246,214 - PfGW456L13_3772 0.79 -1.9
4,246,214 - PfGW456L13_3772 0.79 +0.4
4,246,214 - PfGW456L13_3772 0.79 +0.6
4,246,214 - PfGW456L13_3772 0.79 +0.4
4,246,214 - PfGW456L13_3772 0.79 -0.2
4,246,214 - PfGW456L13_3772 0.79 +0.7
4,246,214 - PfGW456L13_3772 0.79 -0.1
4,246,214 - PfGW456L13_3772 0.79 +0.4
4,246,214 - PfGW456L13_3772 0.79 -0.1
4,246,214 - PfGW456L13_3772 0.79 -0.0
4,246,216 - PfGW456L13_3772 0.79 +0.2
4,246,567 - PfGW456L13_3773 0.44 -0.6
4,246,567 - PfGW456L13_3773 0.44 +0.6
4,246,567 - PfGW456L13_3773 0.44 +0.3
4,246,567 - PfGW456L13_3773 0.44 +0.0
4,246,567 - PfGW456L13_3773 0.44 -1.3
4,246,988 - -0.1
4,246,988 - -0.9
4,246,988 - +1.1
4,247,068 - PfGW456L13_3774 0.13 +1.2
4,247,400 + +1.6
4,247,400 + PfGW456L13_3774 0.86 -0.1
4,247,401 - PfGW456L13_3774 0.86 +0.3
4,247,448 - +0.4
4,247,448 - -1.7
4,247,494 + +0.7
4,247,494 + +0.6
4,247,494 + +0.6
4,247,494 + +0.1
4,247,494 + +0.8
4,247,494 + -0.6
4,247,494 + +0.3
4,247,495 - -0.3
4,247,495 - +0.8
4,247,495 - -0.2
4,247,495 - +1.9
4,247,495 - +0.0
4,247,495 - -0.0
4,247,495 - +0.2
4,247,495 - -0.2
4,247,496 + +0.7
4,247,496 + +0.7
4,247,496 + -0.2
4,247,496 + -0.9
4,247,497 - +0.2
4,247,497 - -0.2
4,247,497 - +0.6
4,247,497 - -0.1
4,247,497 - +0.5
4,247,497 - +0.3
4,247,544 + +1.1
4,247,544 + -0.6
4,247,544 + -1.1
4,247,544 + +0.3
4,247,545 - -0.1
4,247,545 - +0.1
4,247,545 - -0.1
4,247,545 - +0.7
4,247,549 + -0.9
4,247,550 - +0.7
4,247,550 - -0.2
4,247,550 - +1.6
4,247,550 - -0.4
4,247,553 + +0.2
4,247,554 - +0.6
4,247,585 + +0.6
4,247,585 + -0.1
4,247,586 - +0.9
4,247,586 - +0.5
4,247,599 + -0.0
4,247,633 + -1.0
4,247,633 + -0.1
4,247,633 + +0.4
4,247,633 + -0.6
4,247,634 - +0.3
4,247,634 - +0.2
4,247,634 - -0.2
4,247,647 - +1.1
4,247,647 - +0.7
4,247,647 - +0.2
4,247,691 - -0.7
4,247,786 + -0.5
4,247,786 + -0.3
4,247,786 + -0.6
4,247,786 + +0.9
4,247,786 + +0.1
4,247,787 - +0.8
4,247,787 - +1.2
4,247,787 - +0.7
4,247,787 - +0.2
4,247,787 - +0.1
4,247,787 - +0.5
4,247,787 - +3.0
4,247,787 - +0.6
4,247,787 - -0.2
4,247,787 - +0.3
4,247,787 - +0.8
4,247,830 + -0.0
4,247,845 + +0.4
4,247,846 - +0.1
4,247,846 - -0.6
4,247,889 + -0.9
4,247,890 - +0.1
4,247,893 + +0.0
4,247,991 - +0.6
4,248,018 + -2.0
4,248,024 + -0.6
4,248,024 + +0.2
4,248,024 + -0.3
4,248,025 - +0.2
4,248,025 - -0.6
4,248,025 - +0.8
4,248,025 - -0.2
4,248,025 - +1.2
4,248,025 - +0.6
4,248,025 - +0.8
4,248,044 + +0.1
4,248,044 + -0.6
4,248,044 + -0.1
4,248,044 + -0.2
4,248,044 + +0.0
4,248,045 - -0.4
4,248,045 - -0.1
4,248,045 - +0.7
4,248,285 + PfGW456L13_3775 0.16 -0.3
4,248,285 + PfGW456L13_3775 0.16 -0.9
4,248,285 + PfGW456L13_3775 0.16 +0.9
4,248,286 - PfGW456L13_3775 0.16 +0.1
4,248,286 - PfGW456L13_3775 0.16 +0.2
4,248,305 + PfGW456L13_3775 0.18 +0.5
4,248,305 + PfGW456L13_3775 0.18 -1.0
4,248,306 - PfGW456L13_3775 0.18 +2.4
4,248,306 - PfGW456L13_3775 0.18 +0.5
4,248,306 - PfGW456L13_3775 0.18 -0.1
4,248,306 - PfGW456L13_3775 0.18 +0.4
4,248,306 - PfGW456L13_3775 0.18 -0.8
4,248,309 + PfGW456L13_3775 0.18 +1.0
4,248,309 + PfGW456L13_3775 0.18 +1.1
4,248,309 + PfGW456L13_3775 0.18 +0.4
4,248,309 + PfGW456L13_3775 0.18 +0.4
4,248,309 + PfGW456L13_3775 0.18 +0.5
4,248,309 + PfGW456L13_3775 0.18 +0.8
4,248,309 + PfGW456L13_3775 0.18 -0.4
4,248,309 + PfGW456L13_3775 0.18 +0.6
4,248,309 + PfGW456L13_3775 0.18 +0.4
4,248,309 + PfGW456L13_3775 0.18 -0.4
4,248,309 + PfGW456L13_3775 0.18 +1.3
4,248,310 - PfGW456L13_3775 0.18 -1.2
4,248,310 - PfGW456L13_3775 0.18 +1.0
4,248,310 - PfGW456L13_3775 0.18 -0.1
4,248,310 - PfGW456L13_3775 0.18 -0.2
4,248,310 - PfGW456L13_3775 0.18 +0.3
4,248,321 + PfGW456L13_3775 0.19 +2.4
4,248,321 + PfGW456L13_3775 0.19 +0.5
4,248,321 + PfGW456L13_3775 0.19 +0.5
4,248,321 + PfGW456L13_3775 0.19 +0.6
4,248,321 + PfGW456L13_3775 0.19 +1.0
4,248,321 + PfGW456L13_3775 0.19 +0.7
4,248,322 - PfGW456L13_3775 0.19 +0.2
4,248,322 - PfGW456L13_3775 0.19 -1.0
4,248,322 - PfGW456L13_3775 0.19 +0.6
4,248,327 + PfGW456L13_3775 0.19 -0.1
4,248,327 + PfGW456L13_3775 0.19 +1.6
4,248,328 - PfGW456L13_3775 0.19 +0.8
4,248,328 - PfGW456L13_3775 0.19 +0.2
4,248,328 - PfGW456L13_3775 0.19 -0.1
4,248,365 + PfGW456L13_3775 0.22 +0.6
4,248,365 + PfGW456L13_3775 0.22 -0.7
4,248,366 - PfGW456L13_3775 0.22 +0.7
4,248,368 + PfGW456L13_3775 0.22 -0.1
4,248,369 - PfGW456L13_3775 0.22 -0.6
4,248,369 - PfGW456L13_3775 0.22 -0.6
4,248,369 - PfGW456L13_3775 0.22 -1.0
4,248,369 - PfGW456L13_3775 0.22 -0.2
4,248,369 - PfGW456L13_3775 0.22 +0.8
4,248,381 + PfGW456L13_3775 0.23 -0.6
4,248,382 - PfGW456L13_3775 0.23 -0.6
4,248,382 - PfGW456L13_3775 0.23 +1.4
4,248,383 + PfGW456L13_3775 0.23 +0.6
4,248,383 + PfGW456L13_3775 0.23 -0.2
4,248,383 + PfGW456L13_3775 0.23 -0.9
4,248,404 - PfGW456L13_3775 0.25 -1.1
4,248,424 + PfGW456L13_3775 0.26 -0.6
4,248,425 - +0.9
4,248,425 - PfGW456L13_3775 0.26 +0.1
4,248,425 - PfGW456L13_3775 0.26 +1.6
4,248,425 - PfGW456L13_3775 0.26 +0.2
4,248,425 - PfGW456L13_3775 0.26 +0.2
4,248,425 - PfGW456L13_3775 0.26 +1.1

Or see this region's nucleotide sequence