Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3709

Experiment: Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3708 and PfGW456L13_3709 overlap by 4 nucleotidesPfGW456L13_3709 and PfGW456L13_3710 are separated by 297 nucleotides PfGW456L13_3708 - Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA, at 4,170,382 to 4,173,540 _3708 PfGW456L13_3709 - Cation efflux system protein CusF precursor, at 4,173,537 to 4,173,887 _3709 PfGW456L13_3710 - Glycine-rich RNA-binding protein GRP1A, at 4,174,185 to 4,175,198 _3710 Position (kb) 4173 4174Strain fitness (log2 ratio) -2 -1 0 1 2at 4172.690 kb on + strand, within PfGW456L13_3708at 4172.690 kb on + strand, within PfGW456L13_3708at 4172.690 kb on + strand, within PfGW456L13_3708at 4172.690 kb on + strand, within PfGW456L13_3708at 4172.690 kb on + strand, within PfGW456L13_3708at 4172.691 kb on - strand, within PfGW456L13_3708at 4172.691 kb on - strand, within PfGW456L13_3708at 4172.691 kb on - strand, within PfGW456L13_3708at 4172.691 kb on - strand, within PfGW456L13_3708at 4172.691 kb on - strand, within PfGW456L13_3708at 4172.691 kb on - strand, within PfGW456L13_3708at 4172.691 kb on - strand, within PfGW456L13_3708at 4172.691 kb on - strand, within PfGW456L13_3708at 4172.691 kb on - strand, within PfGW456L13_3708at 4172.691 kb on - strand, within PfGW456L13_3708at 4172.746 kb on + strand, within PfGW456L13_3708at 4172.746 kb on + strand, within PfGW456L13_3708at 4172.746 kb on + strand, within PfGW456L13_3708at 4172.747 kb on - strand, within PfGW456L13_3708at 4172.747 kb on - strand, within PfGW456L13_3708at 4172.854 kb on + strand, within PfGW456L13_3708at 4172.854 kb on + strand, within PfGW456L13_3708at 4172.854 kb on + strand, within PfGW456L13_3708at 4172.854 kb on + strand, within PfGW456L13_3708at 4172.854 kb on + strand, within PfGW456L13_3708at 4172.855 kb on - strand, within PfGW456L13_3708at 4172.855 kb on - strand, within PfGW456L13_3708at 4172.855 kb on - strand, within PfGW456L13_3708at 4172.855 kb on - strand, within PfGW456L13_3708at 4173.043 kb on + strand, within PfGW456L13_3708at 4173.044 kb on - strand, within PfGW456L13_3708at 4173.210 kb on + strand, within PfGW456L13_3708at 4173.210 kb on + strand, within PfGW456L13_3708at 4173.210 kb on + strand, within PfGW456L13_3708at 4173.210 kb on + strand, within PfGW456L13_3708at 4173.210 kb on + strand, within PfGW456L13_3708at 4173.210 kb on + strand, within PfGW456L13_3708at 4173.210 kb on + strand, within PfGW456L13_3708at 4173.210 kb on + strand, within PfGW456L13_3708at 4173.210 kb on + strand, within PfGW456L13_3708at 4173.210 kb on + strand, within PfGW456L13_3708at 4173.210 kb on + strand, within PfGW456L13_3708at 4173.210 kb on + strand, within PfGW456L13_3708at 4173.211 kb on - strand, within PfGW456L13_3708at 4173.211 kb on - strand, within PfGW456L13_3708at 4173.211 kb on - strand, within PfGW456L13_3708at 4173.211 kb on - strand, within PfGW456L13_3708at 4173.211 kb on - strand, within PfGW456L13_3708at 4173.221 kb on - strand, within PfGW456L13_3708at 4173.224 kb on + strand, within PfGW456L13_3708at 4173.305 kb on + strandat 4173.528 kb on + strandat 4173.529 kb on - strandat 4173.529 kb on - strandat 4173.529 kb on - strandat 4173.529 kb on - strandat 4173.529 kb on - strandat 4173.536 kb on + strandat 4173.536 kb on + strandat 4173.536 kb on + strandat 4173.537 kb on - strandat 4173.537 kb on - strandat 4173.571 kb on + strandat 4173.572 kb on - strand, within PfGW456L13_3709at 4173.719 kb on + strand, within PfGW456L13_3709at 4173.719 kb on + strand, within PfGW456L13_3709at 4173.720 kb on - strand, within PfGW456L13_3709at 4173.720 kb on - strand, within PfGW456L13_3709at 4173.855 kb on - strandat 4173.879 kb on - strandat 4173.885 kb on + strandat 4173.915 kb on + strandat 4173.915 kb on + strandat 4173.915 kb on + strandat 4173.915 kb on + strandat 4173.915 kb on + strandat 4173.915 kb on + strandat 4173.916 kb on - strandat 4173.916 kb on - strandat 4173.916 kb on - strandat 4173.916 kb on - strandat 4173.916 kb on - strandat 4173.939 kb on + strandat 4174.141 kb on + strandat 4174.141 kb on + strandat 4174.142 kb on - strandat 4174.146 kb on + strandat 4174.146 kb on + strandat 4174.147 kb on - strandat 4174.186 kb on + strandat 4174.186 kb on + strandat 4174.187 kb on - strandat 4174.187 kb on - strandat 4174.187 kb on - strandat 4174.317 kb on + strand, within PfGW456L13_3710at 4174.318 kb on - strand, within PfGW456L13_3710at 4174.318 kb on - strand, within PfGW456L13_3710at 4174.318 kb on - strand, within PfGW456L13_3710at 4174.318 kb on - strand, within PfGW456L13_3710at 4174.685 kb on + strand, within PfGW456L13_3710at 4174.686 kb on - strand, within PfGW456L13_3710at 4174.686 kb on - strand, within PfGW456L13_3710

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
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4,172,690 + PfGW456L13_3708 0.73 +0.2
4,172,690 + PfGW456L13_3708 0.73 -0.3
4,172,690 + PfGW456L13_3708 0.73 -0.2
4,172,690 + PfGW456L13_3708 0.73 -1.1
4,172,690 + PfGW456L13_3708 0.73 -0.4
4,172,691 - PfGW456L13_3708 0.73 +0.0
4,172,691 - PfGW456L13_3708 0.73 -0.1
4,172,691 - PfGW456L13_3708 0.73 -1.0
4,172,691 - PfGW456L13_3708 0.73 +0.3
4,172,691 - PfGW456L13_3708 0.73 +1.3
4,172,691 - PfGW456L13_3708 0.73 +0.1
4,172,691 - PfGW456L13_3708 0.73 -0.6
4,172,691 - PfGW456L13_3708 0.73 +0.7
4,172,691 - PfGW456L13_3708 0.73 +1.0
4,172,691 - PfGW456L13_3708 0.73 +0.5
4,172,746 + PfGW456L13_3708 0.75 +0.6
4,172,746 + PfGW456L13_3708 0.75 +1.2
4,172,746 + PfGW456L13_3708 0.75 +0.0
4,172,747 - PfGW456L13_3708 0.75 -0.5
4,172,747 - PfGW456L13_3708 0.75 +0.1
4,172,854 + PfGW456L13_3708 0.78 +0.2
4,172,854 + PfGW456L13_3708 0.78 +0.1
4,172,854 + PfGW456L13_3708 0.78 -0.5
4,172,854 + PfGW456L13_3708 0.78 -0.2
4,172,854 + PfGW456L13_3708 0.78 +0.6
4,172,855 - PfGW456L13_3708 0.78 +0.1
4,172,855 - PfGW456L13_3708 0.78 -0.4
4,172,855 - PfGW456L13_3708 0.78 -0.6
4,172,855 - PfGW456L13_3708 0.78 +0.1
4,173,043 + PfGW456L13_3708 0.84 -0.1
4,173,044 - PfGW456L13_3708 0.84 +0.5
4,173,210 + PfGW456L13_3708 0.90 -0.3
4,173,210 + PfGW456L13_3708 0.90 +1.9
4,173,210 + PfGW456L13_3708 0.90 -0.5
4,173,210 + PfGW456L13_3708 0.90 -0.9
4,173,210 + PfGW456L13_3708 0.90 +0.8
4,173,210 + PfGW456L13_3708 0.90 +0.5
4,173,210 + PfGW456L13_3708 0.90 -0.2
4,173,210 + PfGW456L13_3708 0.90 -0.6
4,173,210 + PfGW456L13_3708 0.90 -0.5
4,173,210 + PfGW456L13_3708 0.90 -0.2
4,173,210 + PfGW456L13_3708 0.90 -0.1
4,173,210 + PfGW456L13_3708 0.90 -0.4
4,173,211 - PfGW456L13_3708 0.90 -0.2
4,173,211 - PfGW456L13_3708 0.90 +0.2
4,173,211 - PfGW456L13_3708 0.90 -0.7
4,173,211 - PfGW456L13_3708 0.90 +0.5
4,173,211 - PfGW456L13_3708 0.90 +0.4
4,173,221 - PfGW456L13_3708 0.90 -0.1
4,173,224 + PfGW456L13_3708 0.90 -0.9
4,173,305 + +0.6
4,173,528 + -0.5
4,173,529 - +0.5
4,173,529 - +1.2
4,173,529 - +0.9
4,173,529 - -1.0
4,173,529 - +0.8
4,173,536 + +1.1
4,173,536 + -0.7
4,173,536 + -1.8
4,173,537 - -0.6
4,173,537 - -0.1
4,173,571 + -2.3
4,173,572 - PfGW456L13_3709 0.10 +2.3
4,173,719 + PfGW456L13_3709 0.52 -0.1
4,173,719 + PfGW456L13_3709 0.52 +1.7
4,173,720 - PfGW456L13_3709 0.52 -0.3
4,173,720 - PfGW456L13_3709 0.52 +0.7
4,173,855 - -0.3
4,173,879 - +0.3
4,173,885 + +1.1
4,173,915 + +0.4
4,173,915 + +0.5
4,173,915 + -0.1
4,173,915 + +0.8
4,173,915 + +0.2
4,173,915 + +0.1
4,173,916 - -0.9
4,173,916 - -1.8
4,173,916 - +0.0
4,173,916 - -0.6
4,173,916 - +0.5
4,173,939 + -0.2
4,174,141 + -0.1
4,174,141 + -0.6
4,174,142 - -0.0
4,174,146 + +0.4
4,174,146 + -1.0
4,174,147 - +0.4
4,174,186 + +0.5
4,174,186 + -0.5
4,174,187 - +0.0
4,174,187 - -0.2
4,174,187 - -0.8
4,174,317 + PfGW456L13_3710 0.13 -0.5
4,174,318 - PfGW456L13_3710 0.13 -0.9
4,174,318 - PfGW456L13_3710 0.13 -0.4
4,174,318 - PfGW456L13_3710 0.13 -1.0
4,174,318 - PfGW456L13_3710 0.13 +0.5
4,174,685 + PfGW456L13_3710 0.49 +0.7
4,174,686 - PfGW456L13_3710 0.49 +0.4
4,174,686 - PfGW456L13_3710 0.49 -0.1

Or see this region's nucleotide sequence