Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3683

Experiment: Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3682 and PfGW456L13_3683 are separated by 491 nucleotidesPfGW456L13_3683 and PfGW456L13_3684 are separated by 288 nucleotides PfGW456L13_3682 - Quinone oxidoreductase (EC 1.6.5.5), at 4,139,494 to 4,140,468 _3682 PfGW456L13_3683 - FIG00957787: hypothetical protein, at 4,140,960 to 4,141,238 _3683 PfGW456L13_3684 - FIG00960959: hypothetical protein, at 4,141,527 to 4,142,168 _3684 Position (kb) 4140 4141 4142Strain fitness (log2 ratio) -1 0 1 2at 4140.033 kb on - strand, within PfGW456L13_3682at 4140.066 kb on - strand, within PfGW456L13_3682at 4140.066 kb on - strand, within PfGW456L13_3682at 4140.066 kb on - strand, within PfGW456L13_3682at 4140.066 kb on - strand, within PfGW456L13_3682at 4140.066 kb on - strand, within PfGW456L13_3682at 4140.083 kb on + strand, within PfGW456L13_3682at 4140.083 kb on + strand, within PfGW456L13_3682at 4140.083 kb on + strand, within PfGW456L13_3682at 4140.084 kb on - strand, within PfGW456L13_3682at 4140.084 kb on - strand, within PfGW456L13_3682at 4140.188 kb on + strand, within PfGW456L13_3682at 4140.188 kb on + strand, within PfGW456L13_3682at 4140.189 kb on - strand, within PfGW456L13_3682at 4140.189 kb on - strand, within PfGW456L13_3682at 4140.189 kb on - strand, within PfGW456L13_3682at 4140.212 kb on + strand, within PfGW456L13_3682at 4140.229 kb on + strand, within PfGW456L13_3682at 4140.355 kb on + strand, within PfGW456L13_3682at 4140.355 kb on + strand, within PfGW456L13_3682at 4140.355 kb on + strand, within PfGW456L13_3682at 4140.355 kb on + strand, within PfGW456L13_3682at 4140.356 kb on - strand, within PfGW456L13_3682at 4140.356 kb on - strand, within PfGW456L13_3682at 4140.356 kb on - strand, within PfGW456L13_3682at 4140.356 kb on - strand, within PfGW456L13_3682at 4140.356 kb on - strand, within PfGW456L13_3682at 4140.376 kb on + strandat 4140.376 kb on + strandat 4140.377 kb on - strandat 4140.377 kb on - strandat 4140.377 kb on - strandat 4140.377 kb on - strandat 4140.425 kb on - strandat 4140.425 kb on - strandat 4140.425 kb on - strandat 4140.463 kb on + strandat 4140.463 kb on + strandat 4140.464 kb on - strandat 4140.464 kb on - strandat 4140.464 kb on - strandat 4140.464 kb on - strandat 4140.464 kb on - strandat 4140.464 kb on - strandat 4140.464 kb on - strandat 4140.532 kb on - strandat 4140.588 kb on - strandat 4140.597 kb on + strandat 4140.597 kb on + strandat 4140.598 kb on - strandat 4140.607 kb on + strandat 4140.607 kb on + strandat 4140.607 kb on + strandat 4140.608 kb on - strandat 4140.610 kb on + strandat 4140.610 kb on + strandat 4140.687 kb on + strandat 4140.687 kb on + strandat 4140.687 kb on + strandat 4140.688 kb on - strandat 4140.688 kb on - strandat 4140.718 kb on + strandat 4140.920 kb on + strandat 4140.920 kb on + strandat 4140.920 kb on + strandat 4140.920 kb on + strandat 4140.921 kb on - strandat 4140.921 kb on - strandat 4140.921 kb on - strandat 4140.921 kb on - strandat 4140.921 kb on - strandat 4140.921 kb on - strandat 4140.921 kb on - strandat 4140.952 kb on - strandat 4140.960 kb on - strandat 4140.960 kb on - strandat 4140.960 kb on - strandat 4141.100 kb on - strand, within PfGW456L13_3683at 4141.115 kb on + strand, within PfGW456L13_3683at 4141.115 kb on + strand, within PfGW456L13_3683at 4141.155 kb on + strand, within PfGW456L13_3683at 4141.223 kb on + strandat 4141.290 kb on - strandat 4141.290 kb on - strandat 4141.410 kb on + strandat 4141.410 kb on + strandat 4141.433 kb on + strandat 4141.433 kb on + strandat 4141.434 kb on - strandat 4141.524 kb on - strandat 4141.551 kb on + strandat 4141.551 kb on + strandat 4141.570 kb on + strandat 4141.825 kb on + strand, within PfGW456L13_3684at 4141.868 kb on - strand, within PfGW456L13_3684at 4141.868 kb on - strand, within PfGW456L13_3684at 4142.074 kb on + strand, within PfGW456L13_3684at 4142.074 kb on + strand, within PfGW456L13_3684at 4142.074 kb on + strand, within PfGW456L13_3684at 4142.074 kb on + strandat 4142.074 kb on + strand, within PfGW456L13_3684at 4142.074 kb on + strand, within PfGW456L13_3684

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
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4,140,033 - PfGW456L13_3682 0.55 -0.7
4,140,066 - PfGW456L13_3682 0.59 -0.6
4,140,066 - PfGW456L13_3682 0.59 +0.4
4,140,066 - PfGW456L13_3682 0.59 +0.4
4,140,066 - PfGW456L13_3682 0.59 -0.8
4,140,066 - PfGW456L13_3682 0.59 -0.9
4,140,083 + PfGW456L13_3682 0.60 -0.4
4,140,083 + PfGW456L13_3682 0.60 +0.3
4,140,083 + PfGW456L13_3682 0.60 -0.1
4,140,084 - PfGW456L13_3682 0.61 -0.4
4,140,084 - PfGW456L13_3682 0.61 +0.6
4,140,188 + PfGW456L13_3682 0.71 -0.9
4,140,188 + PfGW456L13_3682 0.71 -0.3
4,140,189 - PfGW456L13_3682 0.71 +1.1
4,140,189 - PfGW456L13_3682 0.71 +1.0
4,140,189 - PfGW456L13_3682 0.71 -0.2
4,140,212 + PfGW456L13_3682 0.74 +0.7
4,140,229 + PfGW456L13_3682 0.75 -0.6
4,140,355 + PfGW456L13_3682 0.88 -1.7
4,140,355 + PfGW456L13_3682 0.88 -0.4
4,140,355 + PfGW456L13_3682 0.88 +0.6
4,140,355 + PfGW456L13_3682 0.88 +0.2
4,140,356 - PfGW456L13_3682 0.88 +0.3
4,140,356 - PfGW456L13_3682 0.88 +0.2
4,140,356 - PfGW456L13_3682 0.88 +0.0
4,140,356 - PfGW456L13_3682 0.88 -0.1
4,140,356 - PfGW456L13_3682 0.88 -0.1
4,140,376 + -0.3
4,140,376 + +0.5
4,140,377 - +0.7
4,140,377 - +0.1
4,140,377 - -0.3
4,140,377 - +0.1
4,140,425 - +0.1
4,140,425 - -0.8
4,140,425 - +0.1
4,140,463 + +1.1
4,140,463 + -0.9
4,140,464 - -0.4
4,140,464 - -0.4
4,140,464 - +1.7
4,140,464 - -0.9
4,140,464 - -0.5
4,140,464 - +0.3
4,140,464 - -0.3
4,140,532 - +0.4
4,140,588 - +0.4
4,140,597 + +0.0
4,140,597 + +0.3
4,140,598 - +0.3
4,140,607 + +1.1
4,140,607 + +0.2
4,140,607 + -0.8
4,140,608 - -1.1
4,140,610 + -0.2
4,140,610 + -0.2
4,140,687 + -1.1
4,140,687 + +0.9
4,140,687 + +0.4
4,140,688 - -0.1
4,140,688 - +0.4
4,140,718 + -0.3
4,140,920 + +0.7
4,140,920 + -0.2
4,140,920 + -0.8
4,140,920 + +0.4
4,140,921 - -0.7
4,140,921 - +0.3
4,140,921 - +0.0
4,140,921 - +0.3
4,140,921 - -0.1
4,140,921 - +0.7
4,140,921 - +1.6
4,140,952 - +0.1
4,140,960 - +1.2
4,140,960 - +1.2
4,140,960 - +1.4
4,141,100 - PfGW456L13_3683 0.50 +0.5
4,141,115 + PfGW456L13_3683 0.56 +1.2
4,141,115 + PfGW456L13_3683 0.56 +0.4
4,141,155 + PfGW456L13_3683 0.70 +1.0
4,141,223 + +0.9
4,141,290 - +1.0
4,141,290 - -0.2
4,141,410 + -0.5
4,141,410 + -0.4
4,141,433 + -1.1
4,141,433 + -0.1
4,141,434 - +1.2
4,141,524 - -0.3
4,141,551 + -0.5
4,141,551 + -0.2
4,141,570 + -1.1
4,141,825 + PfGW456L13_3684 0.46 -0.3
4,141,868 - PfGW456L13_3684 0.53 -0.1
4,141,868 - PfGW456L13_3684 0.53 +0.3
4,142,074 + PfGW456L13_3684 0.85 +0.4
4,142,074 + PfGW456L13_3684 0.85 +0.7
4,142,074 + PfGW456L13_3684 0.85 -0.2
4,142,074 + +1.8
4,142,074 + PfGW456L13_3684 0.85 -0.5
4,142,074 + PfGW456L13_3684 0.85 +0.4

Or see this region's nucleotide sequence