Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3667

Experiment: Zinc 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_3665 and PfGW456L13_3666 are separated by 32 nucleotidesPfGW456L13_3666 and PfGW456L13_3667 are separated by 205 nucleotidesPfGW456L13_3667 and PfGW456L13_3668 are separated by 428 nucleotides PfGW456L13_3665 - Lipase, at 4,125,979 to 4,126,992 _3665 PfGW456L13_3666 - Organic hydroperoxide resistance protein, at 4,127,025 to 4,127,444 _3666 PfGW456L13_3667 - hypothetical protein, at 4,127,650 to 4,127,787 _3667 PfGW456L13_3668 - FIG002283: Isochorismatase family protein, at 4,128,216 to 4,128,902 _3668 Position (kb) 4127 4128Strain fitness (log2 ratio) -1 0 1 2at 4126.682 kb on + strand, within PfGW456L13_3665at 4126.682 kb on + strand, within PfGW456L13_3665at 4126.682 kb on + strandat 4126.683 kb on - strand, within PfGW456L13_3665at 4126.683 kb on - strand, within PfGW456L13_3665at 4126.683 kb on - strand, within PfGW456L13_3665at 4126.683 kb on - strand, within PfGW456L13_3665at 4126.683 kb on - strand, within PfGW456L13_3665at 4126.683 kb on - strand, within PfGW456L13_3665at 4126.867 kb on - strand, within PfGW456L13_3665at 4126.997 kb on + strandat 4126.997 kb on + strandat 4126.998 kb on - strandat 4126.998 kb on - strandat 4127.431 kb on + strandat 4127.491 kb on + strandat 4127.492 kb on - strandat 4127.569 kb on + strandat 4127.727 kb on + strand, within PfGW456L13_3667at 4127.727 kb on + strand, within PfGW456L13_3667at 4127.803 kb on + strandat 4127.803 kb on + strandat 4127.804 kb on - strandat 4127.977 kb on + strandat 4127.978 kb on - strandat 4127.978 kb on - strandat 4128.051 kb on + strandat 4128.051 kb on + strandat 4128.051 kb on + strandat 4128.051 kb on + strandat 4128.051 kb on + strandat 4128.051 kb on + strandat 4128.052 kb on - strandat 4128.052 kb on - strandat 4128.052 kb on - strandat 4128.052 kb on - strandat 4128.052 kb on - strandat 4128.063 kb on - strandat 4128.289 kb on + strand, within PfGW456L13_3668at 4128.289 kb on + strand, within PfGW456L13_3668at 4128.289 kb on + strand, within PfGW456L13_3668at 4128.289 kb on + strand, within PfGW456L13_3668at 4128.290 kb on - strand, within PfGW456L13_3668at 4128.290 kb on - strand, within PfGW456L13_3668at 4128.290 kb on - strand, within PfGW456L13_3668at 4128.290 kb on - strand, within PfGW456L13_3668at 4128.295 kb on + strand, within PfGW456L13_3668at 4128.313 kb on + strand, within PfGW456L13_3668at 4128.313 kb on + strand, within PfGW456L13_3668at 4128.313 kb on + strand, within PfGW456L13_3668at 4128.314 kb on - strand, within PfGW456L13_3668at 4128.333 kb on + strand, within PfGW456L13_3668at 4128.334 kb on - strand, within PfGW456L13_3668at 4128.355 kb on + strand, within PfGW456L13_3668at 4128.355 kb on + strand, within PfGW456L13_3668at 4128.356 kb on - strand, within PfGW456L13_3668at 4128.356 kb on - strand, within PfGW456L13_3668at 4128.356 kb on - strand, within PfGW456L13_3668at 4128.356 kb on - strand, within PfGW456L13_3668at 4128.451 kb on + strand, within PfGW456L13_3668at 4128.497 kb on + strand, within PfGW456L13_3668at 4128.497 kb on + strand, within PfGW456L13_3668at 4128.498 kb on - strand, within PfGW456L13_3668at 4128.499 kb on + strand, within PfGW456L13_3668at 4128.499 kb on + strand, within PfGW456L13_3668at 4128.499 kb on + strand, within PfGW456L13_3668at 4128.499 kb on + strand, within PfGW456L13_3668at 4128.499 kb on + strand, within PfGW456L13_3668at 4128.499 kb on + strand, within PfGW456L13_3668at 4128.499 kb on + strand, within PfGW456L13_3668at 4128.499 kb on + strand, within PfGW456L13_3668at 4128.499 kb on + strand, within PfGW456L13_3668at 4128.499 kb on + strand, within PfGW456L13_3668at 4128.500 kb on - strand, within PfGW456L13_3668at 4128.500 kb on - strand, within PfGW456L13_3668at 4128.500 kb on - strand, within PfGW456L13_3668at 4128.500 kb on - strand, within PfGW456L13_3668at 4128.500 kb on - strand, within PfGW456L13_3668at 4128.500 kb on - strand, within PfGW456L13_3668at 4128.552 kb on + strand, within PfGW456L13_3668at 4128.552 kb on + strand, within PfGW456L13_3668at 4128.552 kb on + strand, within PfGW456L13_3668at 4128.553 kb on - strand, within PfGW456L13_3668at 4128.553 kb on - strand, within PfGW456L13_3668at 4128.615 kb on + strand, within PfGW456L13_3668at 4128.684 kb on + strand, within PfGW456L13_3668at 4128.685 kb on - strand, within PfGW456L13_3668at 4128.694 kb on + strand, within PfGW456L13_3668at 4128.694 kb on + strand, within PfGW456L13_3668at 4128.695 kb on - strand, within PfGW456L13_3668at 4128.749 kb on + strand, within PfGW456L13_3668at 4128.783 kb on - strand, within PfGW456L13_3668

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
remove
4,126,682 + PfGW456L13_3665 0.69 -0.9
4,126,682 + PfGW456L13_3665 0.69 -0.3
4,126,682 + -0.7
4,126,683 - PfGW456L13_3665 0.69 +0.6
4,126,683 - PfGW456L13_3665 0.69 -0.7
4,126,683 - PfGW456L13_3665 0.69 -0.4
4,126,683 - PfGW456L13_3665 0.69 -0.2
4,126,683 - PfGW456L13_3665 0.69 +1.1
4,126,683 - PfGW456L13_3665 0.69 +1.5
4,126,867 - PfGW456L13_3665 0.88 +1.0
4,126,997 + +0.6
4,126,997 + -0.0
4,126,998 - -1.2
4,126,998 - -0.2
4,127,431 + +0.0
4,127,491 + +0.0
4,127,492 - -0.1
4,127,569 + +0.2
4,127,727 + PfGW456L13_3667 0.56 +0.2
4,127,727 + PfGW456L13_3667 0.56 +0.8
4,127,803 + +0.3
4,127,803 + -0.1
4,127,804 - +1.8
4,127,977 + +0.8
4,127,978 - -0.4
4,127,978 - -0.3
4,128,051 + +0.0
4,128,051 + -0.4
4,128,051 + +0.4
4,128,051 + -0.9
4,128,051 + +0.5
4,128,051 + +0.0
4,128,052 - +0.0
4,128,052 - +0.4
4,128,052 - -1.7
4,128,052 - +0.1
4,128,052 - +0.0
4,128,063 - -0.3
4,128,289 + PfGW456L13_3668 0.11 -0.7
4,128,289 + PfGW456L13_3668 0.11 -0.5
4,128,289 + PfGW456L13_3668 0.11 -0.9
4,128,289 + PfGW456L13_3668 0.11 -0.1
4,128,290 - PfGW456L13_3668 0.11 +0.6
4,128,290 - PfGW456L13_3668 0.11 -0.2
4,128,290 - PfGW456L13_3668 0.11 -0.3
4,128,290 - PfGW456L13_3668 0.11 +0.4
4,128,295 + PfGW456L13_3668 0.11 -1.0
4,128,313 + PfGW456L13_3668 0.14 -0.8
4,128,313 + PfGW456L13_3668 0.14 -0.8
4,128,313 + PfGW456L13_3668 0.14 +1.1
4,128,314 - PfGW456L13_3668 0.14 -0.4
4,128,333 + PfGW456L13_3668 0.17 +0.5
4,128,334 - PfGW456L13_3668 0.17 -0.1
4,128,355 + PfGW456L13_3668 0.20 -0.4
4,128,355 + PfGW456L13_3668 0.20 -0.6
4,128,356 - PfGW456L13_3668 0.20 -0.3
4,128,356 - PfGW456L13_3668 0.20 +0.7
4,128,356 - PfGW456L13_3668 0.20 -1.1
4,128,356 - PfGW456L13_3668 0.20 +1.3
4,128,451 + PfGW456L13_3668 0.34 -0.1
4,128,497 + PfGW456L13_3668 0.41 -1.5
4,128,497 + PfGW456L13_3668 0.41 +0.3
4,128,498 - PfGW456L13_3668 0.41 -0.5
4,128,499 + PfGW456L13_3668 0.41 -0.6
4,128,499 + PfGW456L13_3668 0.41 +0.1
4,128,499 + PfGW456L13_3668 0.41 +0.1
4,128,499 + PfGW456L13_3668 0.41 -0.2
4,128,499 + PfGW456L13_3668 0.41 +0.2
4,128,499 + PfGW456L13_3668 0.41 +0.1
4,128,499 + PfGW456L13_3668 0.41 +0.0
4,128,499 + PfGW456L13_3668 0.41 +0.1
4,128,499 + PfGW456L13_3668 0.41 +0.2
4,128,499 + PfGW456L13_3668 0.41 +1.4
4,128,500 - PfGW456L13_3668 0.41 -0.0
4,128,500 - PfGW456L13_3668 0.41 +0.4
4,128,500 - PfGW456L13_3668 0.41 -0.1
4,128,500 - PfGW456L13_3668 0.41 -0.2
4,128,500 - PfGW456L13_3668 0.41 -0.9
4,128,500 - PfGW456L13_3668 0.41 +0.3
4,128,552 + PfGW456L13_3668 0.49 -0.3
4,128,552 + PfGW456L13_3668 0.49 -0.4
4,128,552 + PfGW456L13_3668 0.49 -0.2
4,128,553 - PfGW456L13_3668 0.49 -1.0
4,128,553 - PfGW456L13_3668 0.49 -0.6
4,128,615 + PfGW456L13_3668 0.58 -0.7
4,128,684 + PfGW456L13_3668 0.68 +0.1
4,128,685 - PfGW456L13_3668 0.68 +0.2
4,128,694 + PfGW456L13_3668 0.70 +0.8
4,128,694 + PfGW456L13_3668 0.70 +0.1
4,128,695 - PfGW456L13_3668 0.70 -1.1
4,128,749 + PfGW456L13_3668 0.78 +2.5
4,128,783 - PfGW456L13_3668 0.83 +0.5

Or see this region's nucleotide sequence