Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3443

Experiment: Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3441 and PfGW456L13_3442 are separated by 60 nucleotidesPfGW456L13_3442 and PfGW456L13_3443 overlap by 4 nucleotidesPfGW456L13_3443 and PfGW456L13_3444 are separated by 340 nucleotides PfGW456L13_3441 - Choline dehydrogenase (EC 1.1.99.1), at 3,863,278 to 3,864,897 _3441 PfGW456L13_3442 - hypothetical protein, at 3,864,958 to 3,865,167 _3442 PfGW456L13_3443 - putative cytochrome P450 hydroxylase, at 3,865,164 to 3,866,444 _3443 PfGW456L13_3444 - Transcriptional regulator, TetR family, at 3,866,785 to 3,867,309 _3444 Position (kb) 3865 3866 3867Strain fitness (log2 ratio) -3 -2 -1 0 1at 3864.458 kb on - strand, within PfGW456L13_3441at 3864.458 kb on - strand, within PfGW456L13_3441at 3864.614 kb on + strand, within PfGW456L13_3441at 3864.614 kb on + strandat 3864.614 kb on + strand, within PfGW456L13_3441at 3864.614 kb on + strand, within PfGW456L13_3441at 3864.615 kb on - strand, within PfGW456L13_3441at 3864.615 kb on - strand, within PfGW456L13_3441at 3864.615 kb on - strand, within PfGW456L13_3441at 3864.705 kb on - strand, within PfGW456L13_3441at 3864.733 kb on - strand, within PfGW456L13_3441at 3864.878 kb on + strandat 3864.878 kb on + strandat 3864.879 kb on - strandat 3864.879 kb on - strandat 3864.884 kb on + strandat 3864.912 kb on + strandat 3864.912 kb on + strandat 3864.913 kb on - strandat 3864.924 kb on + strandat 3864.925 kb on - strandat 3864.978 kb on + strandat 3864.979 kb on - strand, within PfGW456L13_3442at 3865.076 kb on + strand, within PfGW456L13_3442at 3865.098 kb on - strand, within PfGW456L13_3442at 3865.415 kb on + strand, within PfGW456L13_3443at 3865.568 kb on - strand, within PfGW456L13_3443at 3865.777 kb on + strand, within PfGW456L13_3443at 3865.778 kb on - strand, within PfGW456L13_3443at 3866.110 kb on + strand, within PfGW456L13_3443at 3866.187 kb on + strand, within PfGW456L13_3443at 3866.335 kb on + strandat 3866.335 kb on + strandat 3866.403 kb on - strandat 3866.438 kb on - strandat 3866.446 kb on - strandat 3866.446 kb on - strandat 3866.535 kb on + strandat 3866.788 kb on + strandat 3866.812 kb on + strandat 3866.848 kb on - strand, within PfGW456L13_3444at 3866.873 kb on - strand, within PfGW456L13_3444at 3866.955 kb on - strand, within PfGW456L13_3444at 3867.165 kb on - strand, within PfGW456L13_3444at 3867.276 kb on + strandat 3867.277 kb on - strandat 3867.399 kb on + strandat 3867.399 kb on + strandat 3867.400 kb on - strandat 3867.400 kb on - strandat 3867.400 kb on - strandat 3867.419 kb on + strandat 3867.443 kb on + strandat 3867.443 kb on + strandat 3867.444 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
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3,864,458 - PfGW456L13_3441 0.73 -1.3
3,864,458 - PfGW456L13_3441 0.73 -2.6
3,864,614 + PfGW456L13_3441 0.82 -0.8
3,864,614 + +0.4
3,864,614 + PfGW456L13_3441 0.82 +1.0
3,864,614 + PfGW456L13_3441 0.82 -1.0
3,864,615 - PfGW456L13_3441 0.83 -0.1
3,864,615 - PfGW456L13_3441 0.83 -0.6
3,864,615 - PfGW456L13_3441 0.83 +1.5
3,864,705 - PfGW456L13_3441 0.88 +0.6
3,864,733 - PfGW456L13_3441 0.90 +0.2
3,864,878 + -0.5
3,864,878 + +0.4
3,864,879 - +0.1
3,864,879 - -0.2
3,864,884 + -1.4
3,864,912 + +0.4
3,864,912 + -0.5
3,864,913 - +0.1
3,864,924 + -1.4
3,864,925 - -0.5
3,864,978 + +0.5
3,864,979 - PfGW456L13_3442 0.10 +0.1
3,865,076 + PfGW456L13_3442 0.56 -0.3
3,865,098 - PfGW456L13_3442 0.67 -2.0
3,865,415 + PfGW456L13_3443 0.20 +0.2
3,865,568 - PfGW456L13_3443 0.32 -0.1
3,865,777 + PfGW456L13_3443 0.48 -0.1
3,865,778 - PfGW456L13_3443 0.48 +0.2
3,866,110 + PfGW456L13_3443 0.74 +0.8
3,866,187 + PfGW456L13_3443 0.80 +1.0
3,866,335 + -0.1
3,866,335 + -3.0
3,866,403 - +1.2
3,866,438 - -1.5
3,866,446 - -2.2
3,866,446 - +0.1
3,866,535 + -0.2
3,866,788 + -0.6
3,866,812 + +0.1
3,866,848 - PfGW456L13_3444 0.12 -0.4
3,866,873 - PfGW456L13_3444 0.17 -0.3
3,866,955 - PfGW456L13_3444 0.32 +0.2
3,867,165 - PfGW456L13_3444 0.72 +0.9
3,867,276 + +0.5
3,867,277 - +1.2
3,867,399 + -0.2
3,867,399 + +0.9
3,867,400 - -0.2
3,867,400 - +0.0
3,867,400 - +0.8
3,867,419 + -0.5
3,867,443 + +0.2
3,867,443 + -1.3
3,867,444 - -0.4

Or see this region's nucleotide sequence