Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3326

Experiment: Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3325 and PfGW456L13_3326 are separated by 10 nucleotidesPfGW456L13_3326 and PfGW456L13_3327 overlap by 4 nucleotidesPfGW456L13_3327 and PfGW456L13_3328 are separated by 32 nucleotides PfGW456L13_3325 - Membrane alanine aminopeptidase N (EC 3.4.11.2), at 3,736,432 to 3,739,089 _3325 PfGW456L13_3326 - FIG00953934: hypothetical protein, at 3,739,100 to 3,739,930 _3326 PfGW456L13_3327 - FIG00954117: hypothetical protein, at 3,739,927 to 3,740,187 _3327 PfGW456L13_3328 - GlpG protein (membrane protein of glp regulon), at 3,740,220 to 3,741,089 _3328 Position (kb) 3739 3740Strain fitness (log2 ratio) -2 -1 0 1 2at 3738.176 kb on + strand, within PfGW456L13_3325at 3738.177 kb on - strand, within PfGW456L13_3325at 3738.338 kb on + strand, within PfGW456L13_3325at 3738.339 kb on - strand, within PfGW456L13_3325at 3738.350 kb on + strand, within PfGW456L13_3325at 3738.350 kb on + strand, within PfGW456L13_3325at 3738.431 kb on + strand, within PfGW456L13_3325at 3738.431 kb on + strand, within PfGW456L13_3325at 3738.432 kb on - strand, within PfGW456L13_3325at 3738.432 kb on - strand, within PfGW456L13_3325at 3738.680 kb on + strand, within PfGW456L13_3325at 3738.680 kb on + strand, within PfGW456L13_3325at 3738.681 kb on - strand, within PfGW456L13_3325at 3738.681 kb on - strand, within PfGW456L13_3325at 3738.681 kb on - strand, within PfGW456L13_3325at 3738.681 kb on - strand, within PfGW456L13_3325at 3738.681 kb on - strand, within PfGW456L13_3325at 3738.683 kb on + strand, within PfGW456L13_3325at 3738.683 kb on + strand, within PfGW456L13_3325at 3738.683 kb on + strand, within PfGW456L13_3325at 3738.683 kb on + strand, within PfGW456L13_3325at 3738.683 kb on + strand, within PfGW456L13_3325at 3738.684 kb on - strand, within PfGW456L13_3325at 3738.684 kb on - strand, within PfGW456L13_3325at 3738.684 kb on - strand, within PfGW456L13_3325at 3738.684 kb on - strand, within PfGW456L13_3325at 3738.684 kb on - strand, within PfGW456L13_3325at 3738.684 kb on - strand, within PfGW456L13_3325at 3738.684 kb on - strand, within PfGW456L13_3325at 3738.684 kb on - strand, within PfGW456L13_3325at 3738.743 kb on + strand, within PfGW456L13_3325at 3738.744 kb on - strand, within PfGW456L13_3325at 3738.851 kb on + strandat 3738.851 kb on + strandat 3738.852 kb on - strandat 3738.998 kb on + strandat 3738.998 kb on + strandat 3738.998 kb on + strandat 3738.998 kb on + strandat 3738.998 kb on + strandat 3739.035 kb on - strandat 3739.049 kb on + strandat 3739.049 kb on + strandat 3739.049 kb on + strandat 3739.050 kb on - strandat 3739.050 kb on - strandat 3739.061 kb on + strandat 3739.061 kb on + strandat 3739.061 kb on + strandat 3739.061 kb on + strandat 3739.062 kb on - strandat 3739.062 kb on - strandat 3739.062 kb on - strandat 3739.062 kb on - strandat 3739.123 kb on - strandat 3739.131 kb on + strandat 3739.132 kb on - strandat 3739.132 kb on - strandat 3739.132 kb on - strandat 3739.249 kb on - strand, within PfGW456L13_3326at 3739.596 kb on + strand, within PfGW456L13_3326at 3739.596 kb on + strand, within PfGW456L13_3326at 3739.597 kb on - strand, within PfGW456L13_3326at 3739.597 kb on - strand, within PfGW456L13_3326at 3739.615 kb on + strand, within PfGW456L13_3326at 3739.616 kb on - strand, within PfGW456L13_3326at 3739.616 kb on - strand, within PfGW456L13_3326at 3739.731 kb on + strand, within PfGW456L13_3326at 3739.794 kb on + strand, within PfGW456L13_3326at 3739.863 kb on + strandat 3739.864 kb on - strandat 3739.956 kb on + strand, within PfGW456L13_3327at 3739.957 kb on - strand, within PfGW456L13_3327at 3740.003 kb on + strandat 3740.145 kb on + strand, within PfGW456L13_3327at 3740.145 kb on + strand, within PfGW456L13_3327at 3740.205 kb on - strandat 3740.245 kb on + strandat 3740.245 kb on + strandat 3740.245 kb on + strandat 3740.245 kb on + strandat 3740.246 kb on - strandat 3740.246 kb on - strandat 3740.246 kb on - strandat 3740.246 kb on - strandat 3740.284 kb on - strandat 3740.402 kb on - strand, within PfGW456L13_3328at 3740.455 kb on + strand, within PfGW456L13_3328at 3740.455 kb on + strand, within PfGW456L13_3328at 3740.456 kb on - strand, within PfGW456L13_3328at 3740.504 kb on - strand, within PfGW456L13_3328at 3740.504 kb on - strand, within PfGW456L13_3328at 3740.558 kb on + strand, within PfGW456L13_3328at 3740.559 kb on - strand, within PfGW456L13_3328at 3740.559 kb on - strand, within PfGW456L13_3328at 3740.599 kb on + strand, within PfGW456L13_3328at 3740.600 kb on - strand, within PfGW456L13_3328at 3740.714 kb on - strand, within PfGW456L13_3328at 3740.714 kb on - strand, within PfGW456L13_3328at 3740.714 kb on - strand, within PfGW456L13_3328at 3740.929 kb on + strand, within PfGW456L13_3328at 3740.929 kb on + strand, within PfGW456L13_3328at 3740.930 kb on - strand, within PfGW456L13_3328at 3740.930 kb on - strand, within PfGW456L13_3328

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
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3,738,176 + PfGW456L13_3325 0.66 +0.1
3,738,177 - PfGW456L13_3325 0.66 +0.2
3,738,338 + PfGW456L13_3325 0.72 +1.1
3,738,339 - PfGW456L13_3325 0.72 -0.3
3,738,350 + PfGW456L13_3325 0.72 -0.5
3,738,350 + PfGW456L13_3325 0.72 +0.4
3,738,431 + PfGW456L13_3325 0.75 -0.3
3,738,431 + PfGW456L13_3325 0.75 -0.3
3,738,432 - PfGW456L13_3325 0.75 -0.5
3,738,432 - PfGW456L13_3325 0.75 -0.7
3,738,680 + PfGW456L13_3325 0.85 -1.5
3,738,680 + PfGW456L13_3325 0.85 -0.2
3,738,681 - PfGW456L13_3325 0.85 +0.3
3,738,681 - PfGW456L13_3325 0.85 -1.6
3,738,681 - PfGW456L13_3325 0.85 +0.6
3,738,681 - PfGW456L13_3325 0.85 +0.2
3,738,681 - PfGW456L13_3325 0.85 +0.7
3,738,683 + PfGW456L13_3325 0.85 -0.3
3,738,683 + PfGW456L13_3325 0.85 +0.3
3,738,683 + PfGW456L13_3325 0.85 +0.7
3,738,683 + PfGW456L13_3325 0.85 -0.9
3,738,683 + PfGW456L13_3325 0.85 +0.1
3,738,684 - PfGW456L13_3325 0.85 -1.0
3,738,684 - PfGW456L13_3325 0.85 -0.2
3,738,684 - PfGW456L13_3325 0.85 -0.2
3,738,684 - PfGW456L13_3325 0.85 -0.3
3,738,684 - PfGW456L13_3325 0.85 +0.2
3,738,684 - PfGW456L13_3325 0.85 -0.1
3,738,684 - PfGW456L13_3325 0.85 +0.7
3,738,684 - PfGW456L13_3325 0.85 +0.1
3,738,743 + PfGW456L13_3325 0.87 -0.3
3,738,744 - PfGW456L13_3325 0.87 -0.1
3,738,851 + +0.1
3,738,851 + -0.4
3,738,852 - -0.2
3,738,998 + +0.3
3,738,998 + -0.8
3,738,998 + -0.8
3,738,998 + -0.5
3,738,998 + +0.3
3,739,035 - -0.7
3,739,049 + -0.1
3,739,049 + +0.8
3,739,049 + -0.9
3,739,050 - -0.1
3,739,050 - -0.3
3,739,061 + -0.5
3,739,061 + -0.2
3,739,061 + -0.1
3,739,061 + -0.3
3,739,062 - -0.7
3,739,062 - +0.3
3,739,062 - +1.0
3,739,062 - +0.2
3,739,123 - -2.0
3,739,131 + -0.0
3,739,132 - +0.1
3,739,132 - +0.4
3,739,132 - -0.8
3,739,249 - PfGW456L13_3326 0.18 +0.7
3,739,596 + PfGW456L13_3326 0.60 +1.8
3,739,596 + PfGW456L13_3326 0.60 +0.6
3,739,597 - PfGW456L13_3326 0.60 +0.2
3,739,597 - PfGW456L13_3326 0.60 +1.3
3,739,615 + PfGW456L13_3326 0.62 +0.2
3,739,616 - PfGW456L13_3326 0.62 +0.2
3,739,616 - PfGW456L13_3326 0.62 +1.2
3,739,731 + PfGW456L13_3326 0.76 +0.3
3,739,794 + PfGW456L13_3326 0.84 -0.4
3,739,863 + +0.8
3,739,864 - +0.0
3,739,956 + PfGW456L13_3327 0.11 -0.5
3,739,957 - PfGW456L13_3327 0.11 -0.1
3,740,003 + +0.3
3,740,145 + PfGW456L13_3327 0.84 -1.3
3,740,145 + PfGW456L13_3327 0.84 -0.3
3,740,205 - +0.5
3,740,245 + -0.2
3,740,245 + +0.3
3,740,245 + -0.8
3,740,245 + -0.9
3,740,246 - -0.4
3,740,246 - +0.8
3,740,246 - -0.2
3,740,246 - +0.1
3,740,284 - -0.6
3,740,402 - PfGW456L13_3328 0.21 -0.1
3,740,455 + PfGW456L13_3328 0.27 -0.2
3,740,455 + PfGW456L13_3328 0.27 +0.5
3,740,456 - PfGW456L13_3328 0.27 -0.6
3,740,504 - PfGW456L13_3328 0.33 -1.0
3,740,504 - PfGW456L13_3328 0.33 +0.2
3,740,558 + PfGW456L13_3328 0.39 +0.7
3,740,559 - PfGW456L13_3328 0.39 +0.1
3,740,559 - PfGW456L13_3328 0.39 -0.4
3,740,599 + PfGW456L13_3328 0.44 -0.5
3,740,600 - PfGW456L13_3328 0.44 -1.5
3,740,714 - PfGW456L13_3328 0.57 -0.2
3,740,714 - PfGW456L13_3328 0.57 -1.7
3,740,714 - PfGW456L13_3328 0.57 -0.1
3,740,929 + PfGW456L13_3328 0.81 +0.3
3,740,929 + PfGW456L13_3328 0.81 +1.0
3,740,930 - PfGW456L13_3328 0.82 -0.1
3,740,930 - PfGW456L13_3328 0.82 +0.0

Or see this region's nucleotide sequence