Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3012

Experiment: Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3009 and PfGW456L13_3010 are separated by 61 nucleotidesPfGW456L13_3010 and PfGW456L13_3011 overlap by 18 nucleotidesPfGW456L13_3011 and PfGW456L13_3012 are separated by 15 nucleotidesPfGW456L13_3012 and PfGW456L13_3013 are separated by 1 nucleotidesPfGW456L13_3013 and PfGW456L13_3014 are separated by 357 nucleotides PfGW456L13_3009 - Fap protein with C39 domain, at 3,352,617 to 3,353,297 _3009 PfGW456L13_3010 - Fap amyloid fibril major component, at 3,353,359 to 3,354,174 _3010 PfGW456L13_3011 - hypothetical protein, at 3,354,157 to 3,354,273 _3011 PfGW456L13_3012 - Fap amyloid fibril minor component, at 3,354,289 to 3,354,867 _3012 PfGW456L13_3013 - Fap unknown function protein, at 3,354,869 to 3,355,306 _3013 PfGW456L13_3014 - Ribosylnicotinamide kinase (EC 2.7.1.22), at 3,355,664 to 3,356,188 _3014 Position (kb) 3354 3355Strain fitness (log2 ratio) -1 0 1at 3353.291 kb on + strandat 3353.291 kb on + strandat 3353.291 kb on + strandat 3353.292 kb on - strandat 3353.292 kb on - strandat 3353.292 kb on - strandat 3353.361 kb on - strandat 3353.428 kb on + strandat 3353.428 kb on + strandat 3353.428 kb on + strandat 3353.428 kb on + strandat 3353.428 kb on + strandat 3353.428 kb on + strandat 3353.429 kb on - strandat 3353.429 kb on - strandat 3353.429 kb on - strandat 3353.429 kb on - strandat 3353.429 kb on - strandat 3353.536 kb on + strand, within PfGW456L13_3010at 3353.536 kb on + strand, within PfGW456L13_3010at 3353.537 kb on - strand, within PfGW456L13_3010at 3353.555 kb on - strand, within PfGW456L13_3010at 3353.659 kb on + strand, within PfGW456L13_3010at 3353.754 kb on + strand, within PfGW456L13_3010at 3353.754 kb on + strand, within PfGW456L13_3010at 3353.964 kb on + strand, within PfGW456L13_3010at 3353.973 kb on + strand, within PfGW456L13_3010at 3353.974 kb on - strand, within PfGW456L13_3010at 3354.001 kb on + strand, within PfGW456L13_3010at 3354.001 kb on + strand, within PfGW456L13_3010at 3354.057 kb on + strand, within PfGW456L13_3010at 3354.057 kb on + strand, within PfGW456L13_3010at 3354.058 kb on - strand, within PfGW456L13_3010at 3354.245 kb on + strand, within PfGW456L13_3011at 3354.245 kb on + strand, within PfGW456L13_3011at 3354.245 kb on + strand, within PfGW456L13_3011at 3354.245 kb on + strand, within PfGW456L13_3011at 3354.246 kb on - strand, within PfGW456L13_3011at 3354.263 kb on + strandat 3354.263 kb on + strandat 3354.263 kb on + strandat 3354.263 kb on + strandat 3354.264 kb on - strandat 3354.264 kb on - strandat 3354.264 kb on - strandat 3354.264 kb on - strandat 3354.264 kb on - strandat 3354.264 kb on - strandat 3354.264 kb on - strandat 3354.264 kb on - strandat 3354.264 kb on - strandat 3354.264 kb on - strandat 3354.319 kb on - strandat 3354.477 kb on + strand, within PfGW456L13_3012at 3354.582 kb on + strand, within PfGW456L13_3012at 3354.582 kb on + strand, within PfGW456L13_3012at 3354.640 kb on - strand, within PfGW456L13_3012at 3354.765 kb on + strand, within PfGW456L13_3012at 3354.847 kb on + strandat 3354.847 kb on + strandat 3354.848 kb on - strandat 3354.848 kb on - strandat 3354.848 kb on - strandat 3354.848 kb on - strandat 3354.848 kb on - strandat 3354.848 kb on - strandat 3354.848 kb on - strandat 3354.848 kb on - strandat 3354.848 kb on - strandat 3354.848 kb on - strandat 3354.985 kb on + strand, within PfGW456L13_3013at 3354.985 kb on + strand, within PfGW456L13_3013at 3355.524 kb on - strandat 3355.535 kb on - strandat 3355.535 kb on - strandat 3355.535 kb on - strandat 3355.568 kb on + strandat 3355.568 kb on + strandat 3355.733 kb on + strand, within PfGW456L13_3014at 3355.734 kb on - strand, within PfGW456L13_3014at 3355.734 kb on - strand, within PfGW456L13_3014

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
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3,353,291 + -0.4
3,353,291 + -0.7
3,353,291 + -0.9
3,353,292 - +0.6
3,353,292 - -0.1
3,353,292 - -1.1
3,353,361 - +0.2
3,353,428 + +0.2
3,353,428 + +0.7
3,353,428 + +0.4
3,353,428 + -0.3
3,353,428 + +0.2
3,353,428 + -0.1
3,353,429 - -0.6
3,353,429 - +0.8
3,353,429 - +0.4
3,353,429 - -0.7
3,353,429 - +0.2
3,353,536 + PfGW456L13_3010 0.22 -0.2
3,353,536 + PfGW456L13_3010 0.22 +0.2
3,353,537 - PfGW456L13_3010 0.22 -0.4
3,353,555 - PfGW456L13_3010 0.24 -0.0
3,353,659 + PfGW456L13_3010 0.37 +0.1
3,353,754 + PfGW456L13_3010 0.48 -0.9
3,353,754 + PfGW456L13_3010 0.48 -0.1
3,353,964 + PfGW456L13_3010 0.74 +0.2
3,353,973 + PfGW456L13_3010 0.75 -0.4
3,353,974 - PfGW456L13_3010 0.75 +0.2
3,354,001 + PfGW456L13_3010 0.79 +0.2
3,354,001 + PfGW456L13_3010 0.79 +0.9
3,354,057 + PfGW456L13_3010 0.86 +0.3
3,354,057 + PfGW456L13_3010 0.86 +1.1
3,354,058 - PfGW456L13_3010 0.86 +0.2
3,354,245 + PfGW456L13_3011 0.75 +0.9
3,354,245 + PfGW456L13_3011 0.75 -1.5
3,354,245 + PfGW456L13_3011 0.75 +0.2
3,354,245 + PfGW456L13_3011 0.75 -0.3
3,354,246 - PfGW456L13_3011 0.76 -0.3
3,354,263 + -0.1
3,354,263 + -0.5
3,354,263 + +0.7
3,354,263 + -1.6
3,354,264 - -0.3
3,354,264 - -1.1
3,354,264 - -0.8
3,354,264 - +0.2
3,354,264 - +0.7
3,354,264 - +0.6
3,354,264 - -1.3
3,354,264 - -0.2
3,354,264 - -0.1
3,354,264 - -0.1
3,354,319 - -0.5
3,354,477 + PfGW456L13_3012 0.32 +1.0
3,354,582 + PfGW456L13_3012 0.51 +1.0
3,354,582 + PfGW456L13_3012 0.51 -0.6
3,354,640 - PfGW456L13_3012 0.61 +1.0
3,354,765 + PfGW456L13_3012 0.82 -1.7
3,354,847 + +0.4
3,354,847 + -0.1
3,354,848 - -1.2
3,354,848 - -1.1
3,354,848 - -0.4
3,354,848 - -0.2
3,354,848 - +0.1
3,354,848 - +0.3
3,354,848 - +0.6
3,354,848 - +1.4
3,354,848 - -0.6
3,354,848 - -0.9
3,354,985 + PfGW456L13_3013 0.26 +1.1
3,354,985 + PfGW456L13_3013 0.26 +0.6
3,355,524 - +0.2
3,355,535 - +1.1
3,355,535 - -0.1
3,355,535 - +0.9
3,355,568 + +0.2
3,355,568 + -0.4
3,355,733 + PfGW456L13_3014 0.13 +1.3
3,355,734 - PfGW456L13_3014 0.13 +0.8
3,355,734 - PfGW456L13_3014 0.13 -0.3

Or see this region's nucleotide sequence