Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2889

Experiment: Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2888 and PfGW456L13_2889 are separated by 817 nucleotides PfGW456L13_2888 - Mobile element protein, at 3,218,068 to 3,218,295 _2888 PfGW456L13_2889 - hypothetical protein, at 3,219,113 to 3,219,292 _2889 Position (kb) 3219 3220Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3218.125 kb on + strand, within PfGW456L13_2888at 3218.125 kb on + strand, within PfGW456L13_2888at 3218.125 kb on + strand, within PfGW456L13_2888at 3218.125 kb on - strand, within PfGW456L13_2888at 3218.126 kb on - strandat 3218.126 kb on - strand, within PfGW456L13_2888at 3218.126 kb on - strand, within PfGW456L13_2888at 3218.136 kb on + strand, within PfGW456L13_2888at 3218.137 kb on - strand, within PfGW456L13_2888at 3218.137 kb on - strand, within PfGW456L13_2888at 3218.210 kb on - strand, within PfGW456L13_2888at 3218.278 kb on + strandat 3218.279 kb on - strandat 3218.279 kb on - strandat 3218.356 kb on + strandat 3218.359 kb on + strandat 3218.360 kb on - strandat 3218.397 kb on - strandat 3218.476 kb on - strandat 3218.491 kb on - strandat 3218.491 kb on - strandat 3218.491 kb on - strandat 3218.491 kb on - strandat 3218.577 kb on + strandat 3218.578 kb on - strandat 3218.653 kb on - strandat 3218.687 kb on + strandat 3218.687 kb on + strandat 3218.687 kb on + strandat 3218.688 kb on - strandat 3218.688 kb on - strandat 3218.688 kb on - strandat 3218.688 kb on - strandat 3218.694 kb on + strandat 3218.726 kb on + strandat 3218.727 kb on - strandat 3218.759 kb on + strandat 3218.759 kb on + strandat 3218.760 kb on - strandat 3218.777 kb on - strandat 3218.833 kb on + strandat 3218.833 kb on + strandat 3218.833 kb on + strandat 3218.833 kb on + strandat 3218.833 kb on + strandat 3218.833 kb on + strandat 3218.833 kb on + strandat 3218.833 kb on + strandat 3218.833 kb on + strandat 3218.833 kb on + strandat 3218.834 kb on - strandat 3218.834 kb on - strandat 3218.834 kb on - strandat 3218.834 kb on - strandat 3218.834 kb on - strandat 3218.848 kb on + strandat 3218.849 kb on - strandat 3218.871 kb on + strandat 3218.871 kb on + strandat 3218.872 kb on - strandat 3218.912 kb on + strandat 3218.912 kb on + strandat 3218.913 kb on - strandat 3218.915 kb on + strandat 3218.915 kb on + strandat 3218.916 kb on - strandat 3218.942 kb on + strandat 3218.942 kb on + strandat 3218.942 kb on + strandat 3218.943 kb on - strandat 3219.080 kb on - strandat 3219.115 kb on - strandat 3219.184 kb on - strand, within PfGW456L13_2889at 3219.222 kb on + strand, within PfGW456L13_2889at 3219.222 kb on + strand, within PfGW456L13_2889at 3219.294 kb on + strandat 3219.294 kb on + strandat 3219.294 kb on + strandat 3219.294 kb on + strandat 3219.294 kb on + strandat 3219.295 kb on - strandat 3219.335 kb on + strandat 3219.336 kb on - strandat 3219.336 kb on - strandat 3219.344 kb on + strandat 3219.345 kb on - strandat 3219.345 kb on - strandat 3219.345 kb on - strandat 3219.345 kb on - strandat 3219.345 kb on - strandat 3219.369 kb on + strandat 3219.370 kb on - strandat 3219.370 kb on - strandat 3219.409 kb on + strandat 3219.409 kb on + strandat 3219.449 kb on + strandat 3219.449 kb on + strandat 3219.450 kb on - strandat 3219.461 kb on + strandat 3219.462 kb on - strandat 3219.526 kb on - strandat 3219.526 kb on - strandat 3219.526 kb on - strandat 3219.538 kb on + strandat 3219.539 kb on - strandat 3219.539 kb on - strandat 3219.632 kb on + strandat 3219.632 kb on + strandat 3219.632 kb on + strandat 3219.632 kb on + strandat 3219.633 kb on - strandat 3219.633 kb on - strandat 3219.633 kb on - strandat 3219.633 kb on - strandat 3219.633 kb on - strandat 3219.660 kb on + strandat 3219.661 kb on - strandat 3219.661 kb on - strandat 3219.711 kb on + strandat 3219.711 kb on + strandat 3219.712 kb on - strandat 3219.898 kb on + strandat 3219.898 kb on + strandat 3219.899 kb on - strandat 3219.899 kb on - strandat 3219.986 kb on + strandat 3219.987 kb on - strandat 3219.987 kb on - strandat 3220.000 kb on + strandat 3220.027 kb on + strandat 3220.135 kb on + strandat 3220.157 kb on + strandat 3220.157 kb on + strandat 3220.158 kb on - strandat 3220.158 kb on - strandat 3220.158 kb on - strandat 3220.158 kb on - strandat 3220.158 kb on - strandat 3220.158 kb on - strandat 3220.231 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
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3,218,125 + PfGW456L13_2888 0.25 -0.8
3,218,125 + PfGW456L13_2888 0.25 +0.5
3,218,125 + PfGW456L13_2888 0.25 +0.9
3,218,125 - PfGW456L13_2888 0.25 +0.7
3,218,126 - +0.5
3,218,126 - PfGW456L13_2888 0.25 +2.8
3,218,126 - PfGW456L13_2888 0.25 -0.7
3,218,136 + PfGW456L13_2888 0.30 -0.2
3,218,137 - PfGW456L13_2888 0.30 -0.1
3,218,137 - PfGW456L13_2888 0.30 -0.9
3,218,210 - PfGW456L13_2888 0.62 -0.2
3,218,278 + +0.1
3,218,279 - +0.6
3,218,279 - +0.2
3,218,356 + +0.7
3,218,359 + -0.8
3,218,360 - -3.1
3,218,397 - -0.9
3,218,476 - -1.2
3,218,491 - +1.3
3,218,491 - +0.3
3,218,491 - +0.9
3,218,491 - +1.0
3,218,577 + +0.5
3,218,578 - +0.3
3,218,653 - +0.1
3,218,687 + +2.5
3,218,687 + +0.1
3,218,687 + -0.3
3,218,688 - +0.5
3,218,688 - -0.3
3,218,688 - -0.1
3,218,688 - +1.3
3,218,694 + +1.1
3,218,726 + -1.0
3,218,727 - -0.9
3,218,759 + +0.8
3,218,759 + -0.5
3,218,760 - -0.4
3,218,777 - +0.5
3,218,833 + -1.2
3,218,833 + -0.2
3,218,833 + +0.3
3,218,833 + +0.4
3,218,833 + +0.3
3,218,833 + -0.0
3,218,833 + -0.3
3,218,833 + -0.1
3,218,833 + +0.1
3,218,833 + +0.4
3,218,834 - -0.2
3,218,834 - +0.4
3,218,834 - +2.5
3,218,834 - +0.2
3,218,834 - -0.2
3,218,848 + +0.3
3,218,849 - -1.2
3,218,871 + -1.6
3,218,871 + +1.1
3,218,872 - -0.0
3,218,912 + -0.1
3,218,912 + -0.5
3,218,913 - -0.2
3,218,915 + +0.2
3,218,915 + +0.2
3,218,916 - +1.4
3,218,942 + -0.5
3,218,942 + +0.8
3,218,942 + +0.1
3,218,943 - -0.3
3,219,080 - -0.5
3,219,115 - -0.1
3,219,184 - PfGW456L13_2889 0.39 +0.2
3,219,222 + PfGW456L13_2889 0.61 +0.6
3,219,222 + PfGW456L13_2889 0.61 +1.8
3,219,294 + -0.3
3,219,294 + -1.2
3,219,294 + +0.1
3,219,294 + +0.6
3,219,294 + +0.5
3,219,295 - +0.5
3,219,335 + +0.5
3,219,336 - -0.5
3,219,336 - +0.1
3,219,344 + -0.7
3,219,345 - -1.2
3,219,345 - -0.1
3,219,345 - +0.7
3,219,345 - +0.7
3,219,345 - +0.5
3,219,369 + -0.6
3,219,370 - -0.0
3,219,370 - +1.0
3,219,409 + +0.0
3,219,409 + -1.9
3,219,449 + -0.3
3,219,449 + +0.2
3,219,450 - -0.8
3,219,461 + -0.8
3,219,462 - -0.3
3,219,526 - +0.7
3,219,526 - +0.2
3,219,526 - -1.6
3,219,538 + +0.4
3,219,539 - -0.3
3,219,539 - +0.6
3,219,632 + +0.1
3,219,632 + -0.2
3,219,632 + +0.2
3,219,632 + +0.3
3,219,633 - -0.0
3,219,633 - +0.8
3,219,633 - -0.2
3,219,633 - -0.5
3,219,633 - +0.7
3,219,660 + +0.5
3,219,661 - +1.8
3,219,661 - +0.6
3,219,711 + +0.1
3,219,711 + +1.2
3,219,712 - +1.4
3,219,898 + -0.1
3,219,898 + +0.1
3,219,899 - -0.3
3,219,899 - -0.3
3,219,986 + +1.0
3,219,987 - -0.1
3,219,987 - -1.7
3,220,000 + +0.5
3,220,027 + +0.1
3,220,135 + +0.4
3,220,157 + -0.6
3,220,157 + -0.3
3,220,158 - -0.1
3,220,158 - -0.3
3,220,158 - +0.7
3,220,158 - +0.6
3,220,158 - +0.3
3,220,158 - -0.2
3,220,231 - -0.4

Or see this region's nucleotide sequence