Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2866

Experiment: Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2864 and PfGW456L13_2865 are separated by 307 nucleotidesPfGW456L13_2865 and PfGW456L13_2866 are separated by 156 nucleotidesPfGW456L13_2866 and PfGW456L13_2867 are separated by 39 nucleotides PfGW456L13_2864 - UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14), at 3,189,154 to 3,190,305 _2864 PfGW456L13_2865 - Bona fide RidA/YjgF/TdcF/RutC subgroup, at 3,190,613 to 3,191,002 _2865 PfGW456L13_2866 - Transcriptional regulator, IclR family, at 3,191,159 to 3,191,938 _2866 PfGW456L13_2867 - D-glucosaminate dehydratase (EC 4.3.1.9) (from data), at 3,191,978 to 3,193,195 _2867 Position (kb) 3191 3192Strain fitness (log2 ratio) -3 -2 -1 0 1at 3190.213 kb on + strandat 3190.214 kb on - strandat 3190.214 kb on - strandat 3190.214 kb on - strandat 3190.215 kb on + strandat 3190.215 kb on + strandat 3190.215 kb on + strandat 3190.215 kb on + strandat 3190.215 kb on + strandat 3190.215 kb on + strandat 3190.215 kb on + strandat 3190.216 kb on - strandat 3190.216 kb on - strandat 3190.216 kb on - strandat 3190.216 kb on - strandat 3190.371 kb on + strandat 3190.371 kb on + strandat 3190.371 kb on + strandat 3190.371 kb on + strandat 3190.371 kb on + strandat 3190.371 kb on + strandat 3190.371 kb on + strandat 3190.371 kb on + strandat 3190.371 kb on + strandat 3190.372 kb on - strandat 3190.372 kb on - strandat 3190.372 kb on - strandat 3190.372 kb on - strandat 3190.372 kb on - strandat 3190.372 kb on - strandat 3190.372 kb on - strandat 3190.372 kb on - strandat 3190.372 kb on - strandat 3190.376 kb on + strandat 3190.377 kb on - strandat 3190.621 kb on + strandat 3190.622 kb on - strandat 3190.985 kb on + strandat 3190.986 kb on - strandat 3190.986 kb on - strandat 3191.139 kb on + strandat 3191.139 kb on + strandat 3191.312 kb on + strand, within PfGW456L13_2866at 3191.378 kb on + strand, within PfGW456L13_2866at 3191.378 kb on + strand, within PfGW456L13_2866at 3191.379 kb on - strand, within PfGW456L13_2866at 3191.396 kb on + strand, within PfGW456L13_2866at 3191.397 kb on - strand, within PfGW456L13_2866at 3191.397 kb on - strand, within PfGW456L13_2866at 3191.519 kb on + strand, within PfGW456L13_2866at 3191.520 kb on - strand, within PfGW456L13_2866at 3191.780 kb on - strand, within PfGW456L13_2866at 3191.873 kb on + strandat 3191.873 kb on + strandat 3191.873 kb on + strandat 3191.873 kb on + strandat 3191.874 kb on - strandat 3191.874 kb on - strandat 3191.874 kb on - strandat 3191.874 kb on - strandat 3191.874 kb on - strandat 3191.874 kb on - strandat 3191.874 kb on - strandat 3192.350 kb on + strand, within PfGW456L13_2867at 3192.350 kb on + strand, within PfGW456L13_2867at 3192.350 kb on + strand, within PfGW456L13_2867at 3192.350 kb on + strand, within PfGW456L13_2867at 3192.351 kb on - strand, within PfGW456L13_2867at 3192.351 kb on - strand, within PfGW456L13_2867at 3192.351 kb on - strand, within PfGW456L13_2867at 3192.351 kb on - strand, within PfGW456L13_2867at 3192.351 kb on - strand, within PfGW456L13_2867at 3192.351 kb on - strand, within PfGW456L13_2867at 3192.395 kb on + strand, within PfGW456L13_2867at 3192.395 kb on + strand, within PfGW456L13_2867at 3192.395 kb on + strand, within PfGW456L13_2867at 3192.395 kb on + strand, within PfGW456L13_2867at 3192.396 kb on - strand, within PfGW456L13_2867at 3192.438 kb on - strand, within PfGW456L13_2867at 3192.545 kb on + strand, within PfGW456L13_2867at 3192.689 kb on + strand, within PfGW456L13_2867at 3192.689 kb on + strand, within PfGW456L13_2867at 3192.690 kb on - strand, within PfGW456L13_2867at 3192.690 kb on - strand, within PfGW456L13_2867at 3192.764 kb on + strand, within PfGW456L13_2867at 3192.764 kb on + strand, within PfGW456L13_2867at 3192.764 kb on + strand, within PfGW456L13_2867at 3192.765 kb on - strand, within PfGW456L13_2867at 3192.765 kb on - strand, within PfGW456L13_2867at 3192.765 kb on - strand, within PfGW456L13_2867at 3192.788 kb on + strand, within PfGW456L13_2867at 3192.788 kb on + strand, within PfGW456L13_2867at 3192.789 kb on - strand, within PfGW456L13_2867at 3192.789 kb on - strand, within PfGW456L13_2867at 3192.789 kb on - strand, within PfGW456L13_2867at 3192.789 kb on - strand, within PfGW456L13_2867at 3192.789 kb on - strand, within PfGW456L13_2867at 3192.789 kb on - strand, within PfGW456L13_2867at 3192.789 kb on - strand, within PfGW456L13_2867at 3192.810 kb on + strand, within PfGW456L13_2867

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
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3,190,213 + +1.2
3,190,214 - -1.3
3,190,214 - +0.1
3,190,214 - -0.0
3,190,215 + +0.5
3,190,215 + +0.3
3,190,215 + -0.1
3,190,215 + -1.3
3,190,215 + -1.3
3,190,215 + +0.2
3,190,215 + +0.2
3,190,216 - +0.9
3,190,216 - +0.5
3,190,216 - -1.5
3,190,216 - +0.5
3,190,371 + +0.7
3,190,371 + -1.1
3,190,371 + +0.5
3,190,371 + -0.1
3,190,371 + -2.3
3,190,371 + -0.1
3,190,371 + -0.0
3,190,371 + -1.9
3,190,371 + +0.5
3,190,372 - +0.7
3,190,372 - -0.8
3,190,372 - -0.5
3,190,372 - +0.8
3,190,372 - +0.1
3,190,372 - +1.5
3,190,372 - +0.8
3,190,372 - -0.5
3,190,372 - +0.3
3,190,376 + -0.2
3,190,377 - +0.7
3,190,621 + +0.1
3,190,622 - -0.3
3,190,985 + -0.3
3,190,986 - -0.7
3,190,986 - -0.1
3,191,139 + -0.3
3,191,139 + -0.4
3,191,312 + PfGW456L13_2866 0.20 +0.2
3,191,378 + PfGW456L13_2866 0.28 -0.1
3,191,378 + PfGW456L13_2866 0.28 -0.2
3,191,379 - PfGW456L13_2866 0.28 +0.3
3,191,396 + PfGW456L13_2866 0.30 +1.0
3,191,397 - PfGW456L13_2866 0.31 +0.5
3,191,397 - PfGW456L13_2866 0.31 +0.8
3,191,519 + PfGW456L13_2866 0.46 +0.7
3,191,520 - PfGW456L13_2866 0.46 +0.0
3,191,780 - PfGW456L13_2866 0.80 +0.2
3,191,873 + -0.9
3,191,873 + -2.0
3,191,873 + -0.3
3,191,873 + -0.2
3,191,874 - +0.6
3,191,874 - +0.7
3,191,874 - -0.2
3,191,874 - -0.2
3,191,874 - -0.3
3,191,874 - -0.4
3,191,874 - +1.1
3,192,350 + PfGW456L13_2867 0.31 -0.1
3,192,350 + PfGW456L13_2867 0.31 -0.2
3,192,350 + PfGW456L13_2867 0.31 -0.4
3,192,350 + PfGW456L13_2867 0.31 -0.4
3,192,351 - PfGW456L13_2867 0.31 +0.1
3,192,351 - PfGW456L13_2867 0.31 +0.6
3,192,351 - PfGW456L13_2867 0.31 -0.1
3,192,351 - PfGW456L13_2867 0.31 +0.0
3,192,351 - PfGW456L13_2867 0.31 +0.0
3,192,351 - PfGW456L13_2867 0.31 -0.9
3,192,395 + PfGW456L13_2867 0.34 +0.3
3,192,395 + PfGW456L13_2867 0.34 -0.3
3,192,395 + PfGW456L13_2867 0.34 +0.7
3,192,395 + PfGW456L13_2867 0.34 +0.2
3,192,396 - PfGW456L13_2867 0.34 +0.5
3,192,438 - PfGW456L13_2867 0.38 -0.1
3,192,545 + PfGW456L13_2867 0.47 -1.3
3,192,689 + PfGW456L13_2867 0.58 -2.9
3,192,689 + PfGW456L13_2867 0.58 -0.4
3,192,690 - PfGW456L13_2867 0.58 -0.5
3,192,690 - PfGW456L13_2867 0.58 +0.4
3,192,764 + PfGW456L13_2867 0.65 +0.9
3,192,764 + PfGW456L13_2867 0.65 +0.3
3,192,764 + PfGW456L13_2867 0.65 +0.3
3,192,765 - PfGW456L13_2867 0.65 +0.6
3,192,765 - PfGW456L13_2867 0.65 -0.6
3,192,765 - PfGW456L13_2867 0.65 -0.1
3,192,788 + PfGW456L13_2867 0.67 +0.7
3,192,788 + PfGW456L13_2867 0.67 -0.2
3,192,789 - PfGW456L13_2867 0.67 -0.0
3,192,789 - PfGW456L13_2867 0.67 +0.1
3,192,789 - PfGW456L13_2867 0.67 -0.5
3,192,789 - PfGW456L13_2867 0.67 +0.2
3,192,789 - PfGW456L13_2867 0.67 -1.2
3,192,789 - PfGW456L13_2867 0.67 -1.0
3,192,789 - PfGW456L13_2867 0.67 -0.1
3,192,810 + PfGW456L13_2867 0.68 +0.1

Or see this region's nucleotide sequence