Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2702

Experiment: Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2700 and PfGW456L13_2701 are separated by 235 nucleotidesPfGW456L13_2701 and PfGW456L13_2702 are separated by 0 nucleotidesPfGW456L13_2702 and PfGW456L13_2703 are separated by 134 nucleotides PfGW456L13_2700 - Arsenate reductase (EC 1.20.4.1), at 2,998,398 to 2,998,841 _2700 PfGW456L13_2701 - Cytochrome c2, at 2,999,077 to 2,999,466 _2701 PfGW456L13_2702 - Glycine cleavage system transcriptional activator, at 2,999,467 to 3,000,342 _2702 PfGW456L13_2703 - Agmatine deiminase (EC 3.5.3.12), at 3,000,477 to 3,001,529 _2703 Position (kb) 2999 3000 3001Strain fitness (log2 ratio) -1 0 1 2at 2998.629 kb on + strand, within PfGW456L13_2700at 2998.860 kb on + strandat 2998.948 kb on + strandat 2998.948 kb on + strandat 2998.948 kb on + strandat 2998.948 kb on + strandat 2998.948 kb on + strandat 2998.949 kb on - strandat 2998.949 kb on - strandat 2998.949 kb on - strandat 2998.949 kb on - strandat 2998.961 kb on + strandat 2999.043 kb on + strandat 2999.043 kb on + strandat 2999.043 kb on + strandat 2999.047 kb on + strandat 2999.048 kb on - strandat 2999.287 kb on + strand, within PfGW456L13_2701at 2999.287 kb on + strand, within PfGW456L13_2701at 2999.287 kb on + strand, within PfGW456L13_2701at 2999.288 kb on - strand, within PfGW456L13_2701at 2999.288 kb on - strand, within PfGW456L13_2701at 2999.288 kb on - strand, within PfGW456L13_2701at 2999.288 kb on - strand, within PfGW456L13_2701at 2999.288 kb on - strand, within PfGW456L13_2701at 2999.288 kb on - strand, within PfGW456L13_2701at 2999.288 kb on - strand, within PfGW456L13_2701at 2999.351 kb on - strand, within PfGW456L13_2701at 2999.441 kb on - strandat 2999.740 kb on + strand, within PfGW456L13_2702at 2999.740 kb on + strand, within PfGW456L13_2702at 2999.740 kb on + strand, within PfGW456L13_2702at 2999.740 kb on + strand, within PfGW456L13_2702at 2999.740 kb on + strand, within PfGW456L13_2702at 2999.741 kb on - strand, within PfGW456L13_2702at 2999.741 kb on - strand, within PfGW456L13_2702at 2999.741 kb on - strand, within PfGW456L13_2702at 2999.741 kb on - strand, within PfGW456L13_2702at 2999.741 kb on - strand, within PfGW456L13_2702at 2999.741 kb on - strand, within PfGW456L13_2702at 2999.741 kb on - strandat 2999.741 kb on - strand, within PfGW456L13_2702at 3000.053 kb on - strand, within PfGW456L13_2702at 3000.342 kb on + strandat 3000.408 kb on + strandat 3000.408 kb on + strandat 3000.408 kb on + strandat 3000.408 kb on + strandat 3000.408 kb on + strandat 3000.408 kb on + strandat 3000.408 kb on + strandat 3000.408 kb on + strandat 3000.408 kb on + strandat 3000.408 kb on + strandat 3000.408 kb on + strandat 3000.408 kb on + strandat 3000.408 kb on + strandat 3000.408 kb on + strandat 3000.408 kb on + strandat 3000.409 kb on - strandat 3000.409 kb on - strandat 3000.409 kb on - strandat 3000.409 kb on - strandat 3000.409 kb on - strandat 3000.409 kb on - strandat 3000.409 kb on - strandat 3000.409 kb on - strandat 3000.409 kb on - strandat 3000.409 kb on - strandat 3000.409 kb on - strandat 3000.409 kb on - strandat 3000.409 kb on - strandat 3000.409 kb on - strandat 3000.409 kb on - strandat 3000.409 kb on - strandat 3000.491 kb on - strandat 3001.092 kb on + strand, within PfGW456L13_2703at 3001.092 kb on + strand, within PfGW456L13_2703at 3001.092 kb on + strand, within PfGW456L13_2703at 3001.093 kb on - strand, within PfGW456L13_2703at 3001.093 kb on - strand, within PfGW456L13_2703at 3001.093 kb on - strand, within PfGW456L13_2703at 3001.093 kb on - strand, within PfGW456L13_2703at 3001.093 kb on - strand, within PfGW456L13_2703at 3001.194 kb on + strand, within PfGW456L13_2703at 3001.195 kb on - strand, within PfGW456L13_2703at 3001.329 kb on + strand, within PfGW456L13_2703at 3001.329 kb on + strand, within PfGW456L13_2703at 3001.330 kb on - strand, within PfGW456L13_2703at 3001.341 kb on + strand, within PfGW456L13_2703at 3001.341 kb on + strand, within PfGW456L13_2703at 3001.342 kb on - strand, within PfGW456L13_2703at 3001.342 kb on - strand, within PfGW456L13_2703at 3001.342 kb on - strand, within PfGW456L13_2703at 3001.342 kb on - strand, within PfGW456L13_2703at 3001.342 kb on - strand, within PfGW456L13_2703

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
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2,998,629 + PfGW456L13_2700 0.52 -0.7
2,998,860 + +0.4
2,998,948 + +1.5
2,998,948 + -0.6
2,998,948 + -1.4
2,998,948 + +0.0
2,998,948 + +0.5
2,998,949 - -0.8
2,998,949 - +0.3
2,998,949 - +0.8
2,998,949 - -0.5
2,998,961 + -0.6
2,999,043 + -0.4
2,999,043 + -0.9
2,999,043 + -0.4
2,999,047 + +1.0
2,999,048 - -1.0
2,999,287 + PfGW456L13_2701 0.54 +0.1
2,999,287 + PfGW456L13_2701 0.54 -1.5
2,999,287 + PfGW456L13_2701 0.54 +0.1
2,999,288 - PfGW456L13_2701 0.54 -1.1
2,999,288 - PfGW456L13_2701 0.54 +0.7
2,999,288 - PfGW456L13_2701 0.54 +0.1
2,999,288 - PfGW456L13_2701 0.54 +0.5
2,999,288 - PfGW456L13_2701 0.54 -0.3
2,999,288 - PfGW456L13_2701 0.54 -0.1
2,999,288 - PfGW456L13_2701 0.54 -0.4
2,999,351 - PfGW456L13_2701 0.70 -0.3
2,999,441 - +0.3
2,999,740 + PfGW456L13_2702 0.31 +1.7
2,999,740 + PfGW456L13_2702 0.31 +0.7
2,999,740 + PfGW456L13_2702 0.31 +0.1
2,999,740 + PfGW456L13_2702 0.31 +0.8
2,999,740 + PfGW456L13_2702 0.31 +0.8
2,999,741 - PfGW456L13_2702 0.31 -0.7
2,999,741 - PfGW456L13_2702 0.31 +0.5
2,999,741 - PfGW456L13_2702 0.31 +1.4
2,999,741 - PfGW456L13_2702 0.31 +1.4
2,999,741 - PfGW456L13_2702 0.31 +0.1
2,999,741 - PfGW456L13_2702 0.31 -0.4
2,999,741 - +2.7
2,999,741 - PfGW456L13_2702 0.31 -0.7
3,000,053 - PfGW456L13_2702 0.67 +0.6
3,000,342 + -1.2
3,000,408 + +0.1
3,000,408 + -0.4
3,000,408 + +0.4
3,000,408 + -0.0
3,000,408 + -0.5
3,000,408 + +0.8
3,000,408 + +0.5
3,000,408 + -0.3
3,000,408 + +0.4
3,000,408 + +1.2
3,000,408 + -0.2
3,000,408 + -0.5
3,000,408 + +0.1
3,000,408 + -0.2
3,000,408 + -0.0
3,000,409 - +0.6
3,000,409 - +0.1
3,000,409 - +0.7
3,000,409 - +0.4
3,000,409 - -0.4
3,000,409 - +0.6
3,000,409 - +0.3
3,000,409 - +0.5
3,000,409 - -0.2
3,000,409 - -1.5
3,000,409 - +0.5
3,000,409 - -0.6
3,000,409 - -0.5
3,000,409 - +0.6
3,000,409 - -1.0
3,000,409 - +0.3
3,000,491 - +0.4
3,001,092 + PfGW456L13_2703 0.58 -0.1
3,001,092 + PfGW456L13_2703 0.58 -1.1
3,001,092 + PfGW456L13_2703 0.58 -0.5
3,001,093 - PfGW456L13_2703 0.58 -0.7
3,001,093 - PfGW456L13_2703 0.58 -0.5
3,001,093 - PfGW456L13_2703 0.58 -0.8
3,001,093 - PfGW456L13_2703 0.58 -0.1
3,001,093 - PfGW456L13_2703 0.58 -0.1
3,001,194 + PfGW456L13_2703 0.68 -0.8
3,001,195 - PfGW456L13_2703 0.68 +0.1
3,001,329 + PfGW456L13_2703 0.81 -0.6
3,001,329 + PfGW456L13_2703 0.81 +0.9
3,001,330 - PfGW456L13_2703 0.81 -0.2
3,001,341 + PfGW456L13_2703 0.82 -0.6
3,001,341 + PfGW456L13_2703 0.82 +0.3
3,001,342 - PfGW456L13_2703 0.82 +0.0
3,001,342 - PfGW456L13_2703 0.82 +0.6
3,001,342 - PfGW456L13_2703 0.82 +0.2
3,001,342 - PfGW456L13_2703 0.82 +1.1
3,001,342 - PfGW456L13_2703 0.82 -0.1

Or see this region's nucleotide sequence