Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2529

Experiment: Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2528 and PfGW456L13_2529 are separated by 138 nucleotidesPfGW456L13_2529 and PfGW456L13_2530 are separated by 477 nucleotides PfGW456L13_2528 - Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme, at 2,795,300 to 2,796,484 _2528 PfGW456L13_2529 - Alkanal monooxygenase alpha chain (EC 1.14.14.3), at 2,796,623 to 2,797,744 _2529 PfGW456L13_2530 - 2,3-dihydroxybiphenyl 1,2-dioxygenase, at 2,798,222 to 2,799,118 _2530 Position (kb) 2796 2797 2798Strain fitness (log2 ratio) -1 0 1 2 3at 2795.654 kb on + strand, within PfGW456L13_2528at 2795.654 kb on + strand, within PfGW456L13_2528at 2795.654 kb on + strand, within PfGW456L13_2528at 2795.654 kb on + strand, within PfGW456L13_2528at 2795.654 kb on + strand, within PfGW456L13_2528at 2795.654 kb on + strand, within PfGW456L13_2528at 2795.654 kb on + strand, within PfGW456L13_2528at 2795.654 kb on + strand, within PfGW456L13_2528at 2795.654 kb on + strand, within PfGW456L13_2528at 2795.654 kb on + strand, within PfGW456L13_2528at 2795.654 kb on + strand, within PfGW456L13_2528at 2795.654 kb on + strand, within PfGW456L13_2528at 2795.654 kb on + strand, within PfGW456L13_2528at 2795.654 kb on + strand, within PfGW456L13_2528at 2795.655 kb on - strand, within PfGW456L13_2528at 2795.655 kb on - strand, within PfGW456L13_2528at 2795.655 kb on - strand, within PfGW456L13_2528at 2795.655 kb on - strand, within PfGW456L13_2528at 2795.655 kb on - strand, within PfGW456L13_2528at 2795.656 kb on + strand, within PfGW456L13_2528at 2795.657 kb on - strand, within PfGW456L13_2528at 2795.799 kb on - strand, within PfGW456L13_2528at 2795.800 kb on + strand, within PfGW456L13_2528at 2795.801 kb on - strand, within PfGW456L13_2528at 2796.269 kb on + strand, within PfGW456L13_2528at 2796.383 kb on - strandat 2796.426 kb on - strandat 2796.426 kb on - strandat 2796.426 kb on - strandat 2796.494 kb on - strandat 2796.494 kb on - strandat 2796.582 kb on - strandat 2796.605 kb on + strandat 2796.605 kb on + strandat 2796.606 kb on - strandat 2796.606 kb on - strandat 2797.034 kb on + strand, within PfGW456L13_2529at 2797.034 kb on + strand, within PfGW456L13_2529at 2797.035 kb on - strand, within PfGW456L13_2529at 2797.148 kb on + strand, within PfGW456L13_2529at 2797.259 kb on + strand, within PfGW456L13_2529at 2797.260 kb on - strand, within PfGW456L13_2529at 2797.260 kb on - strand, within PfGW456L13_2529at 2797.271 kb on + strand, within PfGW456L13_2529at 2797.398 kb on - strand, within PfGW456L13_2529at 2797.398 kb on - strand, within PfGW456L13_2529at 2797.425 kb on - strand, within PfGW456L13_2529at 2797.581 kb on - strand, within PfGW456L13_2529at 2797.745 kb on + strandat 2797.745 kb on + strandat 2797.746 kb on - strandat 2797.746 kb on - strandat 2797.746 kb on - strandat 2797.755 kb on + strandat 2797.783 kb on + strandat 2797.784 kb on - strandat 2797.805 kb on - strandat 2797.877 kb on + strandat 2797.962 kb on + strandat 2798.043 kb on - strandat 2798.156 kb on + strandat 2798.156 kb on + strandat 2798.156 kb on + strandat 2798.157 kb on - strandat 2798.157 kb on - strandat 2798.160 kb on + strandat 2798.160 kb on + strandat 2798.161 kb on - strandat 2798.161 kb on - strandat 2798.161 kb on - strandat 2798.161 kb on - strandat 2798.285 kb on + strandat 2798.342 kb on + strand, within PfGW456L13_2530at 2798.342 kb on + strand, within PfGW456L13_2530at 2798.343 kb on - strand, within PfGW456L13_2530at 2798.661 kb on + strand, within PfGW456L13_2530at 2798.661 kb on + strand, within PfGW456L13_2530at 2798.662 kb on - strand, within PfGW456L13_2530at 2798.662 kb on - strand, within PfGW456L13_2530at 2798.662 kb on - strand, within PfGW456L13_2530at 2798.703 kb on - strand, within PfGW456L13_2530at 2798.703 kb on - strand, within PfGW456L13_2530

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
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2,795,654 + PfGW456L13_2528 0.30 -0.5
2,795,654 + PfGW456L13_2528 0.30 -0.2
2,795,654 + PfGW456L13_2528 0.30 -0.4
2,795,654 + PfGW456L13_2528 0.30 +1.7
2,795,654 + PfGW456L13_2528 0.30 +0.9
2,795,654 + PfGW456L13_2528 0.30 -0.1
2,795,654 + PfGW456L13_2528 0.30 +0.3
2,795,654 + PfGW456L13_2528 0.30 -0.6
2,795,654 + PfGW456L13_2528 0.30 -0.4
2,795,654 + PfGW456L13_2528 0.30 -0.2
2,795,654 + PfGW456L13_2528 0.30 -0.6
2,795,654 + PfGW456L13_2528 0.30 -0.4
2,795,654 + PfGW456L13_2528 0.30 -0.6
2,795,654 + PfGW456L13_2528 0.30 -0.3
2,795,655 - PfGW456L13_2528 0.30 +0.2
2,795,655 - PfGW456L13_2528 0.30 +0.1
2,795,655 - PfGW456L13_2528 0.30 +0.4
2,795,655 - PfGW456L13_2528 0.30 -0.8
2,795,655 - PfGW456L13_2528 0.30 +0.0
2,795,656 + PfGW456L13_2528 0.30 -0.4
2,795,657 - PfGW456L13_2528 0.30 +0.8
2,795,799 - PfGW456L13_2528 0.42 +0.4
2,795,800 + PfGW456L13_2528 0.42 -0.2
2,795,801 - PfGW456L13_2528 0.42 +0.5
2,796,269 + PfGW456L13_2528 0.82 -0.9
2,796,383 - +0.5
2,796,426 - +0.6
2,796,426 - -0.1
2,796,426 - +0.3
2,796,494 - +1.3
2,796,494 - -1.6
2,796,582 - -0.1
2,796,605 + +0.5
2,796,605 + +0.3
2,796,606 - +0.1
2,796,606 - -0.4
2,797,034 + PfGW456L13_2529 0.37 +0.5
2,797,034 + PfGW456L13_2529 0.37 -0.8
2,797,035 - PfGW456L13_2529 0.37 +1.3
2,797,148 + PfGW456L13_2529 0.47 +0.4
2,797,259 + PfGW456L13_2529 0.57 +0.5
2,797,260 - PfGW456L13_2529 0.57 +0.1
2,797,260 - PfGW456L13_2529 0.57 +0.6
2,797,271 + PfGW456L13_2529 0.58 -0.3
2,797,398 - PfGW456L13_2529 0.69 +0.3
2,797,398 - PfGW456L13_2529 0.69 +0.6
2,797,425 - PfGW456L13_2529 0.71 -0.1
2,797,581 - PfGW456L13_2529 0.85 +1.7
2,797,745 + +0.1
2,797,745 + -1.2
2,797,746 - +0.3
2,797,746 - +1.1
2,797,746 - -1.1
2,797,755 + -0.1
2,797,783 + -0.4
2,797,784 - +0.3
2,797,805 - -0.8
2,797,877 + +0.5
2,797,962 + +0.4
2,798,043 - -1.0
2,798,156 + +2.9
2,798,156 + -0.4
2,798,156 + -0.4
2,798,157 - +0.7
2,798,157 - +0.4
2,798,160 + +0.3
2,798,160 + -0.3
2,798,161 - +0.6
2,798,161 - +0.2
2,798,161 - +0.3
2,798,161 - -0.7
2,798,285 + +0.5
2,798,342 + PfGW456L13_2530 0.13 -0.9
2,798,342 + PfGW456L13_2530 0.13 +0.1
2,798,343 - PfGW456L13_2530 0.13 -0.7
2,798,661 + PfGW456L13_2530 0.49 -0.3
2,798,661 + PfGW456L13_2530 0.49 -1.5
2,798,662 - PfGW456L13_2530 0.49 -0.4
2,798,662 - PfGW456L13_2530 0.49 +0.4
2,798,662 - PfGW456L13_2530 0.49 -0.7
2,798,703 - PfGW456L13_2530 0.54 -1.1
2,798,703 - PfGW456L13_2530 0.54 -0.3

Or see this region's nucleotide sequence