Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2445

Experiment: Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2444 and PfGW456L13_2445 are separated by 111 nucleotidesPfGW456L13_2445 and PfGW456L13_2446 are separated by 121 nucleotides PfGW456L13_2444 - Diaminopimelate epimerase (EC 5.1.1.7), at 2,710,259 to 2,711,251 _2444 PfGW456L13_2445 - Cytosine deaminase (EC 3.5.4.1), at 2,711,363 to 2,712,607 _2445 PfGW456L13_2446 - Possible oxidoreductase, at 2,712,729 to 2,713,550 _2446 Position (kb) 2711 2712 2713Strain fitness (log2 ratio) -3 -2 -1 0 1at 2710.439 kb on - strand, within PfGW456L13_2444at 2710.819 kb on + strand, within PfGW456L13_2444at 2710.956 kb on - strand, within PfGW456L13_2444at 2711.241 kb on + strandat 2711.297 kb on - strandat 2711.297 kb on - strandat 2711.297 kb on - strandat 2711.297 kb on - strandat 2711.377 kb on + strandat 2711.378 kb on - strandat 2711.433 kb on + strandat 2711.433 kb on + strandat 2711.433 kb on + strandat 2711.433 kb on + strandat 2711.466 kb on + strandat 2711.466 kb on + strandat 2711.555 kb on - strand, within PfGW456L13_2445at 2712.060 kb on + strand, within PfGW456L13_2445at 2712.083 kb on + strand, within PfGW456L13_2445at 2712.083 kb on + strand, within PfGW456L13_2445at 2712.083 kb on + strandat 2712.083 kb on + strand, within PfGW456L13_2445at 2712.084 kb on - strand, within PfGW456L13_2445at 2712.084 kb on - strand, within PfGW456L13_2445at 2712.084 kb on - strand, within PfGW456L13_2445at 2712.084 kb on - strand, within PfGW456L13_2445at 2712.641 kb on + strandat 2712.641 kb on + strandat 2712.641 kb on + strandat 2712.641 kb on + strandat 2712.642 kb on - strandat 2712.647 kb on + strandat 2712.647 kb on + strandat 2712.647 kb on + strandat 2712.647 kb on + strandat 2712.647 kb on + strandat 2712.648 kb on - strandat 2712.648 kb on - strandat 2712.648 kb on - strandat 2712.648 kb on - strandat 2712.648 kb on - strandat 2712.648 kb on - strandat 2712.648 kb on - strandat 2712.652 kb on + strandat 2712.652 kb on + strandat 2712.731 kb on - strandat 2712.817 kb on + strand, within PfGW456L13_2446at 2712.925 kb on + strand, within PfGW456L13_2446at 2712.926 kb on - strand, within PfGW456L13_2446at 2712.947 kb on + strand, within PfGW456L13_2446at 2712.947 kb on + strand, within PfGW456L13_2446at 2712.947 kb on + strand, within PfGW456L13_2446at 2712.947 kb on + strand, within PfGW456L13_2446at 2712.948 kb on - strand, within PfGW456L13_2446at 2712.948 kb on - strand, within PfGW456L13_2446at 2712.948 kb on - strand, within PfGW456L13_2446at 2712.949 kb on + strand, within PfGW456L13_2446at 2712.949 kb on + strand, within PfGW456L13_2446at 2712.950 kb on - strand, within PfGW456L13_2446at 2713.021 kb on + strand, within PfGW456L13_2446at 2713.022 kb on - strand, within PfGW456L13_2446at 2713.072 kb on + strand, within PfGW456L13_2446at 2713.072 kb on + strand, within PfGW456L13_2446at 2713.073 kb on - strand, within PfGW456L13_2446at 2713.073 kb on - strand, within PfGW456L13_2446at 2713.099 kb on + strand, within PfGW456L13_2446at 2713.099 kb on + strand, within PfGW456L13_2446at 2713.099 kb on + strand, within PfGW456L13_2446at 2713.099 kb on + strand, within PfGW456L13_2446at 2713.099 kb on + strand, within PfGW456L13_2446at 2713.100 kb on - strand, within PfGW456L13_2446at 2713.100 kb on - strand, within PfGW456L13_2446at 2713.100 kb on - strand, within PfGW456L13_2446at 2713.384 kb on + strand, within PfGW456L13_2446at 2713.384 kb on + strand, within PfGW456L13_2446at 2713.385 kb on - strand, within PfGW456L13_2446at 2713.385 kb on - strand, within PfGW456L13_2446at 2713.435 kb on + strand, within PfGW456L13_2446at 2713.435 kb on + strand, within PfGW456L13_2446at 2713.435 kb on + strand, within PfGW456L13_2446at 2713.435 kb on + strand, within PfGW456L13_2446at 2713.435 kb on + strand, within PfGW456L13_2446at 2713.435 kb on + strand, within PfGW456L13_2446at 2713.435 kb on + strand, within PfGW456L13_2446at 2713.435 kb on + strand, within PfGW456L13_2446at 2713.436 kb on - strand, within PfGW456L13_2446at 2713.436 kb on - strand, within PfGW456L13_2446at 2713.436 kb on - strand, within PfGW456L13_2446at 2713.436 kb on - strand, within PfGW456L13_2446at 2713.436 kb on - strand, within PfGW456L13_2446at 2713.436 kb on - strand, within PfGW456L13_2446at 2713.523 kb on - strandat 2713.550 kb on + strandat 2713.550 kb on + strandat 2713.550 kb on + strandat 2713.550 kb on + strandat 2713.550 kb on + strandat 2713.550 kb on + strandat 2713.550 kb on + strandat 2713.550 kb on + strandat 2713.551 kb on - strandat 2713.551 kb on - strandat 2713.551 kb on - strandat 2713.551 kb on - strandat 2713.551 kb on - strandat 2713.551 kb on - strandat 2713.551 kb on - strandat 2713.551 kb on - strandat 2713.587 kb on + strandat 2713.587 kb on + strandat 2713.587 kb on + strandat 2713.588 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
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2,710,439 - PfGW456L13_2444 0.18 +0.3
2,710,819 + PfGW456L13_2444 0.56 -0.7
2,710,956 - PfGW456L13_2444 0.70 +0.2
2,711,241 + +0.1
2,711,297 - -1.7
2,711,297 - +0.8
2,711,297 - +0.1
2,711,297 - +0.4
2,711,377 + -0.3
2,711,378 - -1.7
2,711,433 + -1.3
2,711,433 + +0.2
2,711,433 + +0.4
2,711,433 + +0.1
2,711,466 + +0.8
2,711,466 + +0.3
2,711,555 - PfGW456L13_2445 0.15 +0.6
2,712,060 + PfGW456L13_2445 0.56 +0.1
2,712,083 + PfGW456L13_2445 0.58 +0.5
2,712,083 + PfGW456L13_2445 0.58 +0.2
2,712,083 + +0.7
2,712,083 + PfGW456L13_2445 0.58 +0.2
2,712,084 - PfGW456L13_2445 0.58 +0.1
2,712,084 - PfGW456L13_2445 0.58 +1.0
2,712,084 - PfGW456L13_2445 0.58 +1.4
2,712,084 - PfGW456L13_2445 0.58 -0.8
2,712,641 + +0.1
2,712,641 + +0.5
2,712,641 + +0.9
2,712,641 + +0.1
2,712,642 - +0.8
2,712,647 + -2.5
2,712,647 + -0.0
2,712,647 + +0.1
2,712,647 + +0.8
2,712,647 + +0.5
2,712,648 - -1.3
2,712,648 - +0.2
2,712,648 - +0.7
2,712,648 - +0.4
2,712,648 - -0.3
2,712,648 - +0.3
2,712,648 - +0.1
2,712,652 + -0.3
2,712,652 + +0.6
2,712,731 - -3.3
2,712,817 + PfGW456L13_2446 0.11 -1.9
2,712,925 + PfGW456L13_2446 0.24 +0.1
2,712,926 - PfGW456L13_2446 0.24 +0.1
2,712,947 + PfGW456L13_2446 0.27 +0.2
2,712,947 + PfGW456L13_2446 0.27 +0.4
2,712,947 + PfGW456L13_2446 0.27 +0.1
2,712,947 + PfGW456L13_2446 0.27 -1.5
2,712,948 - PfGW456L13_2446 0.27 +1.5
2,712,948 - PfGW456L13_2446 0.27 -0.1
2,712,948 - PfGW456L13_2446 0.27 +0.1
2,712,949 + PfGW456L13_2446 0.27 -1.3
2,712,949 + PfGW456L13_2446 0.27 -0.2
2,712,950 - PfGW456L13_2446 0.27 +0.3
2,713,021 + PfGW456L13_2446 0.36 -2.1
2,713,022 - PfGW456L13_2446 0.36 +0.5
2,713,072 + PfGW456L13_2446 0.42 -0.4
2,713,072 + PfGW456L13_2446 0.42 +0.1
2,713,073 - PfGW456L13_2446 0.42 -0.8
2,713,073 - PfGW456L13_2446 0.42 -0.5
2,713,099 + PfGW456L13_2446 0.45 +0.1
2,713,099 + PfGW456L13_2446 0.45 -0.4
2,713,099 + PfGW456L13_2446 0.45 -1.5
2,713,099 + PfGW456L13_2446 0.45 -0.0
2,713,099 + PfGW456L13_2446 0.45 +1.0
2,713,100 - PfGW456L13_2446 0.45 +0.7
2,713,100 - PfGW456L13_2446 0.45 -0.2
2,713,100 - PfGW456L13_2446 0.45 +0.3
2,713,384 + PfGW456L13_2446 0.80 +0.5
2,713,384 + PfGW456L13_2446 0.80 -0.7
2,713,385 - PfGW456L13_2446 0.80 -0.3
2,713,385 - PfGW456L13_2446 0.80 -0.1
2,713,435 + PfGW456L13_2446 0.86 +0.0
2,713,435 + PfGW456L13_2446 0.86 +0.4
2,713,435 + PfGW456L13_2446 0.86 -0.3
2,713,435 + PfGW456L13_2446 0.86 +0.4
2,713,435 + PfGW456L13_2446 0.86 -0.1
2,713,435 + PfGW456L13_2446 0.86 +0.3
2,713,435 + PfGW456L13_2446 0.86 +0.3
2,713,435 + PfGW456L13_2446 0.86 -0.3
2,713,436 - PfGW456L13_2446 0.86 -0.3
2,713,436 - PfGW456L13_2446 0.86 -0.2
2,713,436 - PfGW456L13_2446 0.86 +0.3
2,713,436 - PfGW456L13_2446 0.86 +0.5
2,713,436 - PfGW456L13_2446 0.86 +0.7
2,713,436 - PfGW456L13_2446 0.86 +0.2
2,713,523 - -0.3
2,713,550 + +1.4
2,713,550 + -0.5
2,713,550 + +1.0
2,713,550 + +0.7
2,713,550 + +0.4
2,713,550 + -0.7
2,713,550 + +0.6
2,713,550 + -0.2
2,713,551 - +1.1
2,713,551 - +0.6
2,713,551 - +0.1
2,713,551 - +1.1
2,713,551 - -0.2
2,713,551 - -0.3
2,713,551 - -0.0
2,713,551 - -0.7
2,713,587 + +1.2
2,713,587 + -0.1
2,713,587 + +0.1
2,713,588 - -1.3

Or see this region's nucleotide sequence