Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2434

Experiment: Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2432 and PfGW456L13_2433 are separated by 3 nucleotidesPfGW456L13_2433 and PfGW456L13_2434 are separated by 42 nucleotidesPfGW456L13_2434 and PfGW456L13_2435 are separated by 348 nucleotides PfGW456L13_2432 - 3-hydroxyacyl-CoA dehydrogenase PaaC (EC 1.1.1.-), at 2,695,974 to 2,697,491 _2432 PfGW456L13_2433 - Phenylacetate degradation enoyl-CoA hydratase PaaB (EC 4.2.1.17), at 2,697,495 to 2,698,286 _2433 PfGW456L13_2434 - Phenylacetate degradation enoyl-CoA hydratase PaaA (EC 4.2.1.17), at 2,698,329 to 2,699,102 _2434 PfGW456L13_2435 - Phenylacetic acid degradation protein PaaY, at 2,699,451 to 2,700,047 _2435 Position (kb) 2698 2699 2700Strain fitness (log2 ratio) -1 0 1 2at 2697.554 kb on - strandat 2697.664 kb on + strand, within PfGW456L13_2433at 2697.664 kb on + strand, within PfGW456L13_2433at 2697.664 kb on + strand, within PfGW456L13_2433at 2697.664 kb on + strand, within PfGW456L13_2433at 2697.665 kb on - strand, within PfGW456L13_2433at 2697.665 kb on - strand, within PfGW456L13_2433at 2697.665 kb on - strand, within PfGW456L13_2433at 2697.665 kb on - strand, within PfGW456L13_2433at 2697.665 kb on - strand, within PfGW456L13_2433at 2697.739 kb on + strand, within PfGW456L13_2433at 2697.739 kb on + strand, within PfGW456L13_2433at 2697.912 kb on + strand, within PfGW456L13_2433at 2698.022 kb on - strand, within PfGW456L13_2433at 2698.701 kb on + strand, within PfGW456L13_2434at 2698.701 kb on + strand, within PfGW456L13_2434at 2698.701 kb on + strand, within PfGW456L13_2434at 2698.701 kb on + strand, within PfGW456L13_2434at 2698.702 kb on - strand, within PfGW456L13_2434at 2698.702 kb on - strand, within PfGW456L13_2434at 2698.702 kb on - strand, within PfGW456L13_2434at 2698.745 kb on + strand, within PfGW456L13_2434at 2698.746 kb on - strand, within PfGW456L13_2434at 2698.832 kb on + strand, within PfGW456L13_2434at 2699.182 kb on + strandat 2699.182 kb on + strandat 2699.182 kb on + strandat 2699.182 kb on + strandat 2699.182 kb on + strandat 2699.182 kb on + strandat 2699.182 kb on + strandat 2699.182 kb on + strandat 2699.182 kb on + strandat 2699.182 kb on + strandat 2699.183 kb on - strandat 2699.183 kb on - strandat 2699.183 kb on - strandat 2699.183 kb on - strandat 2699.183 kb on - strandat 2699.183 kb on - strandat 2699.184 kb on + strandat 2699.184 kb on + strandat 2699.184 kb on + strandat 2699.184 kb on + strandat 2699.185 kb on - strandat 2699.185 kb on - strandat 2699.185 kb on - strandat 2699.189 kb on - strandat 2699.189 kb on - strandat 2699.189 kb on - strandat 2699.189 kb on - strandat 2699.202 kb on + strandat 2699.202 kb on + strandat 2699.203 kb on - strandat 2699.225 kb on + strandat 2699.225 kb on + strandat 2699.226 kb on - strandat 2699.314 kb on + strandat 2699.314 kb on + strandat 2699.314 kb on + strandat 2699.314 kb on + strandat 2699.314 kb on + strandat 2699.314 kb on + strandat 2699.314 kb on + strandat 2699.314 kb on + strandat 2699.315 kb on - strandat 2699.315 kb on - strandat 2699.356 kb on + strandat 2699.377 kb on + strandat 2699.460 kb on + strandat 2699.460 kb on + strandat 2699.502 kb on + strandat 2699.502 kb on + strandat 2699.502 kb on + strandat 2699.503 kb on - strandat 2699.503 kb on - strandat 2699.503 kb on - strandat 2699.503 kb on - strandat 2699.503 kb on - strandat 2699.556 kb on + strand, within PfGW456L13_2435at 2699.556 kb on + strand, within PfGW456L13_2435at 2699.556 kb on + strand, within PfGW456L13_2435at 2699.556 kb on + strand, within PfGW456L13_2435at 2699.557 kb on - strand, within PfGW456L13_2435at 2699.557 kb on - strand, within PfGW456L13_2435at 2699.557 kb on - strand, within PfGW456L13_2435at 2699.925 kb on + strand, within PfGW456L13_2435at 2700.038 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
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2,697,554 - +0.4
2,697,664 + PfGW456L13_2433 0.21 -0.3
2,697,664 + PfGW456L13_2433 0.21 -0.6
2,697,664 + PfGW456L13_2433 0.21 -1.1
2,697,664 + PfGW456L13_2433 0.21 +0.7
2,697,665 - PfGW456L13_2433 0.21 -0.5
2,697,665 - PfGW456L13_2433 0.21 -0.0
2,697,665 - PfGW456L13_2433 0.21 -0.8
2,697,665 - PfGW456L13_2433 0.21 +1.9
2,697,665 - PfGW456L13_2433 0.21 -0.2
2,697,739 + PfGW456L13_2433 0.31 +0.9
2,697,739 + PfGW456L13_2433 0.31 +0.1
2,697,912 + PfGW456L13_2433 0.53 +0.3
2,698,022 - PfGW456L13_2433 0.67 +0.2
2,698,701 + PfGW456L13_2434 0.48 +1.6
2,698,701 + PfGW456L13_2434 0.48 +0.1
2,698,701 + PfGW456L13_2434 0.48 +0.5
2,698,701 + PfGW456L13_2434 0.48 +0.2
2,698,702 - PfGW456L13_2434 0.48 +1.3
2,698,702 - PfGW456L13_2434 0.48 -0.4
2,698,702 - PfGW456L13_2434 0.48 +0.2
2,698,745 + PfGW456L13_2434 0.54 -0.1
2,698,746 - PfGW456L13_2434 0.54 +0.7
2,698,832 + PfGW456L13_2434 0.65 -0.3
2,699,182 + +0.3
2,699,182 + -0.1
2,699,182 + +1.8
2,699,182 + +1.2
2,699,182 + +0.2
2,699,182 + +0.1
2,699,182 + +0.2
2,699,182 + +0.2
2,699,182 + -1.4
2,699,182 + +0.4
2,699,183 - +0.8
2,699,183 - -0.3
2,699,183 - +0.2
2,699,183 - -0.2
2,699,183 - -0.0
2,699,183 - -0.2
2,699,184 + -0.0
2,699,184 + +0.3
2,699,184 + +0.3
2,699,184 + +0.5
2,699,185 - -1.5
2,699,185 - -0.5
2,699,185 - -0.5
2,699,189 - +0.5
2,699,189 - +0.6
2,699,189 - -0.1
2,699,189 - -0.5
2,699,202 + -1.0
2,699,202 + +0.1
2,699,203 - +1.4
2,699,225 + +1.2
2,699,225 + +0.3
2,699,226 - -0.6
2,699,314 + -1.3
2,699,314 + -0.2
2,699,314 + +1.1
2,699,314 + +1.4
2,699,314 + +0.2
2,699,314 + -0.2
2,699,314 + -0.0
2,699,314 + +0.6
2,699,315 - -0.9
2,699,315 - -0.5
2,699,356 + +0.7
2,699,377 + -0.2
2,699,460 + -0.9
2,699,460 + +0.0
2,699,502 + -0.2
2,699,502 + -0.4
2,699,502 + +0.3
2,699,503 - -1.1
2,699,503 - +1.2
2,699,503 - +0.7
2,699,503 - -0.8
2,699,503 - -0.2
2,699,556 + PfGW456L13_2435 0.18 +1.1
2,699,556 + PfGW456L13_2435 0.18 +0.4
2,699,556 + PfGW456L13_2435 0.18 +0.7
2,699,556 + PfGW456L13_2435 0.18 +0.8
2,699,557 - PfGW456L13_2435 0.18 +0.7
2,699,557 - PfGW456L13_2435 0.18 +0.3
2,699,557 - PfGW456L13_2435 0.18 +0.4
2,699,925 + PfGW456L13_2435 0.79 +0.6
2,700,038 + +0.9

Or see this region's nucleotide sequence