Experiment: Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_2432 and PfGW456L13_2433 are separated by 3 nucleotides PfGW456L13_2433 and PfGW456L13_2434 are separated by 42 nucleotides PfGW456L13_2434 and PfGW456L13_2435 are separated by 348 nucleotides
PfGW456L13_2432 - 3-hydroxyacyl-CoA dehydrogenase PaaC (EC 1.1.1.-), at 2,695,974 to 2,697,491
_2432
PfGW456L13_2433 - Phenylacetate degradation enoyl-CoA hydratase PaaB (EC 4.2.1.17), at 2,697,495 to 2,698,286
_2433
PfGW456L13_2434 - Phenylacetate degradation enoyl-CoA hydratase PaaA (EC 4.2.1.17), at 2,698,329 to 2,699,102
_2434
PfGW456L13_2435 - Phenylacetic acid degradation protein PaaY, at 2,699,451 to 2,700,047
_2435
Position (kb)
2698
2699
2700 Strain fitness (log2 ratio)
-1
0
1
2 at 2697.554 kb on - strand at 2697.664 kb on + strand, within PfGW456L13_2433 at 2697.664 kb on + strand, within PfGW456L13_2433 at 2697.664 kb on + strand, within PfGW456L13_2433 at 2697.664 kb on + strand, within PfGW456L13_2433 at 2697.665 kb on - strand, within PfGW456L13_2433 at 2697.665 kb on - strand, within PfGW456L13_2433 at 2697.665 kb on - strand, within PfGW456L13_2433 at 2697.665 kb on - strand, within PfGW456L13_2433 at 2697.665 kb on - strand, within PfGW456L13_2433 at 2697.739 kb on + strand, within PfGW456L13_2433 at 2697.739 kb on + strand, within PfGW456L13_2433 at 2697.912 kb on + strand, within PfGW456L13_2433 at 2698.022 kb on - strand, within PfGW456L13_2433 at 2698.701 kb on + strand, within PfGW456L13_2434 at 2698.701 kb on + strand, within PfGW456L13_2434 at 2698.701 kb on + strand, within PfGW456L13_2434 at 2698.701 kb on + strand, within PfGW456L13_2434 at 2698.702 kb on - strand, within PfGW456L13_2434 at 2698.702 kb on - strand, within PfGW456L13_2434 at 2698.702 kb on - strand, within PfGW456L13_2434 at 2698.745 kb on + strand, within PfGW456L13_2434 at 2698.746 kb on - strand, within PfGW456L13_2434 at 2698.832 kb on + strand, within PfGW456L13_2434 at 2699.182 kb on + strand at 2699.182 kb on + strand at 2699.182 kb on + strand at 2699.182 kb on + strand at 2699.182 kb on + strand at 2699.182 kb on + strand at 2699.182 kb on + strand at 2699.182 kb on + strand at 2699.182 kb on + strand at 2699.182 kb on + strand at 2699.183 kb on - strand at 2699.183 kb on - strand at 2699.183 kb on - strand at 2699.183 kb on - strand at 2699.183 kb on - strand at 2699.183 kb on - strand at 2699.184 kb on + strand at 2699.184 kb on + strand at 2699.184 kb on + strand at 2699.184 kb on + strand at 2699.185 kb on - strand at 2699.185 kb on - strand at 2699.185 kb on - strand at 2699.189 kb on - strand at 2699.189 kb on - strand at 2699.189 kb on - strand at 2699.189 kb on - strand at 2699.202 kb on + strand at 2699.202 kb on + strand at 2699.203 kb on - strand at 2699.225 kb on + strand at 2699.225 kb on + strand at 2699.226 kb on - strand at 2699.314 kb on + strand at 2699.314 kb on + strand at 2699.314 kb on + strand at 2699.314 kb on + strand at 2699.314 kb on + strand at 2699.314 kb on + strand at 2699.314 kb on + strand at 2699.314 kb on + strand at 2699.315 kb on - strand at 2699.315 kb on - strand at 2699.356 kb on + strand at 2699.377 kb on + strand at 2699.460 kb on + strand at 2699.460 kb on + strand at 2699.502 kb on + strand at 2699.502 kb on + strand at 2699.502 kb on + strand at 2699.503 kb on - strand at 2699.503 kb on - strand at 2699.503 kb on - strand at 2699.503 kb on - strand at 2699.503 kb on - strand at 2699.556 kb on + strand, within PfGW456L13_2435 at 2699.556 kb on + strand, within PfGW456L13_2435 at 2699.556 kb on + strand, within PfGW456L13_2435 at 2699.556 kb on + strand, within PfGW456L13_2435 at 2699.557 kb on - strand, within PfGW456L13_2435 at 2699.557 kb on - strand, within PfGW456L13_2435 at 2699.557 kb on - strand, within PfGW456L13_2435 at 2699.925 kb on + strand, within PfGW456L13_2435 at 2700.038 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Zinc 1 mM remove 2,697,554 - +0.4 2,697,664 + PfGW456L13_2433 0.21 -0.3 2,697,664 + PfGW456L13_2433 0.21 -0.6 2,697,664 + PfGW456L13_2433 0.21 -1.1 2,697,664 + PfGW456L13_2433 0.21 +0.7 2,697,665 - PfGW456L13_2433 0.21 -0.5 2,697,665 - PfGW456L13_2433 0.21 -0.0 2,697,665 - PfGW456L13_2433 0.21 -0.8 2,697,665 - PfGW456L13_2433 0.21 +1.9 2,697,665 - PfGW456L13_2433 0.21 -0.2 2,697,739 + PfGW456L13_2433 0.31 +0.9 2,697,739 + PfGW456L13_2433 0.31 +0.1 2,697,912 + PfGW456L13_2433 0.53 +0.3 2,698,022 - PfGW456L13_2433 0.67 +0.2 2,698,701 + PfGW456L13_2434 0.48 +1.6 2,698,701 + PfGW456L13_2434 0.48 +0.1 2,698,701 + PfGW456L13_2434 0.48 +0.5 2,698,701 + PfGW456L13_2434 0.48 +0.2 2,698,702 - PfGW456L13_2434 0.48 +1.3 2,698,702 - PfGW456L13_2434 0.48 -0.4 2,698,702 - PfGW456L13_2434 0.48 +0.2 2,698,745 + PfGW456L13_2434 0.54 -0.1 2,698,746 - PfGW456L13_2434 0.54 +0.7 2,698,832 + PfGW456L13_2434 0.65 -0.3 2,699,182 + +0.3 2,699,182 + -0.1 2,699,182 + +1.8 2,699,182 + +1.2 2,699,182 + +0.2 2,699,182 + +0.1 2,699,182 + +0.2 2,699,182 + +0.2 2,699,182 + -1.4 2,699,182 + +0.4 2,699,183 - +0.8 2,699,183 - -0.3 2,699,183 - +0.2 2,699,183 - -0.2 2,699,183 - -0.0 2,699,183 - -0.2 2,699,184 + -0.0 2,699,184 + +0.3 2,699,184 + +0.3 2,699,184 + +0.5 2,699,185 - -1.5 2,699,185 - -0.5 2,699,185 - -0.5 2,699,189 - +0.5 2,699,189 - +0.6 2,699,189 - -0.1 2,699,189 - -0.5 2,699,202 + -1.0 2,699,202 + +0.1 2,699,203 - +1.4 2,699,225 + +1.2 2,699,225 + +0.3 2,699,226 - -0.6 2,699,314 + -1.3 2,699,314 + -0.2 2,699,314 + +1.1 2,699,314 + +1.4 2,699,314 + +0.2 2,699,314 + -0.2 2,699,314 + -0.0 2,699,314 + +0.6 2,699,315 - -0.9 2,699,315 - -0.5 2,699,356 + +0.7 2,699,377 + -0.2 2,699,460 + -0.9 2,699,460 + +0.0 2,699,502 + -0.2 2,699,502 + -0.4 2,699,502 + +0.3 2,699,503 - -1.1 2,699,503 - +1.2 2,699,503 - +0.7 2,699,503 - -0.8 2,699,503 - -0.2 2,699,556 + PfGW456L13_2435 0.18 +1.1 2,699,556 + PfGW456L13_2435 0.18 +0.4 2,699,556 + PfGW456L13_2435 0.18 +0.7 2,699,556 + PfGW456L13_2435 0.18 +0.8 2,699,557 - PfGW456L13_2435 0.18 +0.7 2,699,557 - PfGW456L13_2435 0.18 +0.3 2,699,557 - PfGW456L13_2435 0.18 +0.4 2,699,925 + PfGW456L13_2435 0.79 +0.6 2,700,038 + +0.9
Or see this region's nucleotide sequence