Experiment: Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_2428 and PfGW456L13_2429 overlap by 21 nucleotides PfGW456L13_2429 and PfGW456L13_2430 overlap by 12 nucleotides PfGW456L13_2430 and PfGW456L13_2431 overlap by 8 nucleotides PfGW456L13_2431 and PfGW456L13_2432 overlap by 8 nucleotides
PfGW456L13_2428 - Phenylacetate-coenzyme A ligase (EC 6.2.1.30) PaaF, at 2,692,903 to 2,694,228
_2428
PfGW456L13_2429 - hypothetical protein, at 2,694,208 to 2,694,339
_2429
PfGW456L13_2430 - Acetyl-CoA acetyltransferase (EC 2.3.1.9) @ Beta-ketoadipyl CoA thiolase (EC 2.3.1.-), at 2,694,328 to 2,695,539
_2430
PfGW456L13_2431 - Phenylacetic acid degradation protein PaaD, thioesterase, at 2,695,532 to 2,695,981
_2431
PfGW456L13_2432 - 3-hydroxyacyl-CoA dehydrogenase PaaC (EC 1.1.1.-), at 2,695,974 to 2,697,491
_2432
Position (kb)
2694
2695
2696 Strain fitness (log2 ratio)
-1
0
1 at 2693.411 kb on + strand, within PfGW456L13_2428 at 2693.498 kb on + strand, within PfGW456L13_2428 at 2693.498 kb on + strand, within PfGW456L13_2428 at 2693.648 kb on + strand at 2693.648 kb on + strand, within PfGW456L13_2428 at 2693.648 kb on + strand, within PfGW456L13_2428 at 2693.648 kb on + strand, within PfGW456L13_2428 at 2693.648 kb on + strand, within PfGW456L13_2428 at 2693.649 kb on - strand, within PfGW456L13_2428 at 2693.649 kb on - strand, within PfGW456L13_2428 at 2693.649 kb on - strand, within PfGW456L13_2428 at 2693.649 kb on - strand, within PfGW456L13_2428 at 2693.649 kb on - strand, within PfGW456L13_2428 at 2693.649 kb on - strand, within PfGW456L13_2428 at 2693.649 kb on - strand, within PfGW456L13_2428 at 2693.739 kb on + strand, within PfGW456L13_2428 at 2693.739 kb on + strand, within PfGW456L13_2428 at 2693.894 kb on + strand, within PfGW456L13_2428 at 2693.984 kb on + strand, within PfGW456L13_2428 at 2693.984 kb on + strand, within PfGW456L13_2428 at 2693.985 kb on - strand, within PfGW456L13_2428 at 2693.985 kb on - strand, within PfGW456L13_2428 at 2694.107 kb on + strand at 2694.107 kb on + strand at 2694.107 kb on + strand at 2694.108 kb on - strand at 2694.297 kb on + strand, within PfGW456L13_2429 at 2694.297 kb on + strand, within PfGW456L13_2429 at 2694.298 kb on - strand, within PfGW456L13_2429 at 2694.298 kb on - strand, within PfGW456L13_2429 at 2694.329 kb on + strand at 2694.338 kb on - strand at 2694.399 kb on - strand at 2694.418 kb on + strand at 2694.419 kb on - strand at 2694.419 kb on - strand at 2694.419 kb on - strand at 2694.419 kb on - strand at 2694.419 kb on - strand at 2694.419 kb on - strand at 2694.849 kb on + strand, within PfGW456L13_2430 at 2694.849 kb on + strand, within PfGW456L13_2430 at 2694.850 kb on - strand, within PfGW456L13_2430 at 2694.850 kb on - strand, within PfGW456L13_2430 at 2695.067 kb on + strand, within PfGW456L13_2430 at 2695.067 kb on + strand, within PfGW456L13_2430 at 2695.068 kb on - strand, within PfGW456L13_2430 at 2695.131 kb on + strand, within PfGW456L13_2430 at 2695.132 kb on - strand, within PfGW456L13_2430 at 2695.379 kb on + strand, within PfGW456L13_2430 at 2695.379 kb on + strand, within PfGW456L13_2430 at 2695.380 kb on - strand, within PfGW456L13_2430 at 2695.380 kb on - strand, within PfGW456L13_2430 at 2695.638 kb on + strand, within PfGW456L13_2431 at 2695.638 kb on + strand, within PfGW456L13_2431 at 2695.638 kb on + strand, within PfGW456L13_2431 at 2695.639 kb on - strand, within PfGW456L13_2431 at 2695.639 kb on - strand, within PfGW456L13_2431 at 2695.639 kb on - strand, within PfGW456L13_2431 at 2695.639 kb on - strand, within PfGW456L13_2431 at 2695.639 kb on - strand, within PfGW456L13_2431 at 2695.716 kb on + strand, within PfGW456L13_2431 at 2695.716 kb on + strand, within PfGW456L13_2431 at 2695.716 kb on + strand, within PfGW456L13_2431 at 2695.717 kb on - strand, within PfGW456L13_2431 at 2695.976 kb on - strand at 2696.048 kb on - strand at 2696.048 kb on - strand at 2696.342 kb on + strand, within PfGW456L13_2432
Per-strain Table
Position Strand Gene LocusTag Fraction Zinc 1 mM remove 2,693,411 + PfGW456L13_2428 0.38 -0.1 2,693,498 + PfGW456L13_2428 0.45 -0.6 2,693,498 + PfGW456L13_2428 0.45 +0.6 2,693,648 + +1.7 2,693,648 + PfGW456L13_2428 0.56 -0.9 2,693,648 + PfGW456L13_2428 0.56 -0.4 2,693,648 + PfGW456L13_2428 0.56 +0.3 2,693,648 + PfGW456L13_2428 0.56 +0.7 2,693,649 - PfGW456L13_2428 0.56 -0.0 2,693,649 - PfGW456L13_2428 0.56 +0.1 2,693,649 - PfGW456L13_2428 0.56 +0.9 2,693,649 - PfGW456L13_2428 0.56 +0.0 2,693,649 - PfGW456L13_2428 0.56 -0.4 2,693,649 - PfGW456L13_2428 0.56 -0.1 2,693,649 - PfGW456L13_2428 0.56 -0.6 2,693,739 + PfGW456L13_2428 0.63 +0.2 2,693,739 + PfGW456L13_2428 0.63 +0.9 2,693,894 + PfGW456L13_2428 0.75 +0.1 2,693,984 + PfGW456L13_2428 0.82 +0.6 2,693,984 + PfGW456L13_2428 0.82 -0.2 2,693,985 - PfGW456L13_2428 0.82 -0.9 2,693,985 - PfGW456L13_2428 0.82 +1.0 2,694,107 + +0.2 2,694,107 + +0.8 2,694,107 + -0.3 2,694,108 - -0.3 2,694,297 + PfGW456L13_2429 0.67 +0.6 2,694,297 + PfGW456L13_2429 0.67 -0.6 2,694,298 - PfGW456L13_2429 0.68 -0.3 2,694,298 - PfGW456L13_2429 0.68 +0.0 2,694,329 + -1.0 2,694,338 - -0.0 2,694,399 - +0.3 2,694,418 + -0.8 2,694,419 - +0.3 2,694,419 - +0.7 2,694,419 - +0.8 2,694,419 - -0.2 2,694,419 - +1.5 2,694,419 - +0.4 2,694,849 + PfGW456L13_2430 0.43 +0.3 2,694,849 + PfGW456L13_2430 0.43 -0.7 2,694,850 - PfGW456L13_2430 0.43 -0.7 2,694,850 - PfGW456L13_2430 0.43 +0.8 2,695,067 + PfGW456L13_2430 0.61 -0.7 2,695,067 + PfGW456L13_2430 0.61 +1.0 2,695,068 - PfGW456L13_2430 0.61 +1.2 2,695,131 + PfGW456L13_2430 0.66 +1.1 2,695,132 - PfGW456L13_2430 0.66 +1.0 2,695,379 + PfGW456L13_2430 0.87 +0.9 2,695,379 + PfGW456L13_2430 0.87 -0.2 2,695,380 - PfGW456L13_2430 0.87 +1.7 2,695,380 - PfGW456L13_2430 0.87 +0.0 2,695,638 + PfGW456L13_2431 0.24 +0.8 2,695,638 + PfGW456L13_2431 0.24 -0.6 2,695,638 + PfGW456L13_2431 0.24 -0.1 2,695,639 - PfGW456L13_2431 0.24 -0.9 2,695,639 - PfGW456L13_2431 0.24 +0.7 2,695,639 - PfGW456L13_2431 0.24 +0.7 2,695,639 - PfGW456L13_2431 0.24 +0.1 2,695,639 - PfGW456L13_2431 0.24 +0.7 2,695,716 + PfGW456L13_2431 0.41 -0.6 2,695,716 + PfGW456L13_2431 0.41 +1.3 2,695,716 + PfGW456L13_2431 0.41 -0.1 2,695,717 - PfGW456L13_2431 0.41 -0.3 2,695,976 - -0.1 2,696,048 - -0.0 2,696,048 - -0.2 2,696,342 + PfGW456L13_2432 0.24 +0.2
Or see this region's nucleotide sequence