Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2159

Experiment: Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2158 and PfGW456L13_2159 overlap by 4 nucleotidesPfGW456L13_2159 and PfGW456L13_2160 overlap by 46 nucleotides PfGW456L13_2158 - membrane protein, putative, at 2,362,675 to 2,363,634 _2158 PfGW456L13_2159 - hypothetical protein, at 2,363,631 to 2,363,810 _2159 PfGW456L13_2160 - Fumarate hydratase class II (EC 4.2.1.2), at 2,363,765 to 2,365,159 _2160 Position (kb) 2363 2364Strain fitness (log2 ratio) -2 -1 0 1at 2362.637 kb on + strandat 2362.637 kb on + strandat 2362.778 kb on + strand, within PfGW456L13_2158at 2362.840 kb on + strand, within PfGW456L13_2158at 2362.840 kb on + strand, within PfGW456L13_2158at 2362.841 kb on - strand, within PfGW456L13_2158at 2362.841 kb on - strand, within PfGW456L13_2158at 2362.841 kb on - strand, within PfGW456L13_2158at 2362.933 kb on - strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.936 kb on + strand, within PfGW456L13_2158at 2362.937 kb on - strand, within PfGW456L13_2158at 2362.937 kb on - strand, within PfGW456L13_2158at 2362.937 kb on - strand, within PfGW456L13_2158at 2362.937 kb on - strand, within PfGW456L13_2158at 2362.937 kb on - strand, within PfGW456L13_2158at 2362.937 kb on - strand, within PfGW456L13_2158at 2362.937 kb on - strand, within PfGW456L13_2158at 2362.937 kb on - strand, within PfGW456L13_2158at 2362.937 kb on - strand, within PfGW456L13_2158at 2362.937 kb on - strand, within PfGW456L13_2158at 2362.937 kb on - strand, within PfGW456L13_2158at 2362.937 kb on - strand, within PfGW456L13_2158at 2362.937 kb on - strand, within PfGW456L13_2158at 2362.937 kb on - strand, within PfGW456L13_2158at 2362.937 kb on - strand, within PfGW456L13_2158at 2362.937 kb on - strand, within PfGW456L13_2158at 2362.937 kb on - strand, within PfGW456L13_2158at 2362.945 kb on + strand, within PfGW456L13_2158at 2362.945 kb on + strand, within PfGW456L13_2158at 2362.945 kb on + strand, within PfGW456L13_2158at 2362.945 kb on + strand, within PfGW456L13_2158at 2362.945 kb on + strandat 2362.945 kb on + strand, within PfGW456L13_2158at 2362.945 kb on + strand, within PfGW456L13_2158at 2362.945 kb on + strand, within PfGW456L13_2158at 2362.946 kb on - strand, within PfGW456L13_2158at 2362.991 kb on + strand, within PfGW456L13_2158at 2363.081 kb on + strand, within PfGW456L13_2158at 2363.081 kb on + strand, within PfGW456L13_2158at 2363.149 kb on + strand, within PfGW456L13_2158at 2363.149 kb on + strand, within PfGW456L13_2158at 2363.150 kb on - strand, within PfGW456L13_2158at 2363.150 kb on - strand, within PfGW456L13_2158at 2363.200 kb on + strand, within PfGW456L13_2158at 2363.200 kb on + strand, within PfGW456L13_2158at 2363.200 kb on + strand, within PfGW456L13_2158at 2363.200 kb on + strand, within PfGW456L13_2158at 2363.200 kb on + strand, within PfGW456L13_2158at 2363.201 kb on - strand, within PfGW456L13_2158at 2363.201 kb on - strand, within PfGW456L13_2158at 2363.201 kb on - strand, within PfGW456L13_2158at 2363.263 kb on + strand, within PfGW456L13_2158at 2363.263 kb on + strand, within PfGW456L13_2158at 2363.263 kb on + strand, within PfGW456L13_2158at 2363.263 kb on + strand, within PfGW456L13_2158at 2363.264 kb on - strand, within PfGW456L13_2158at 2363.264 kb on - strand, within PfGW456L13_2158at 2363.264 kb on - strand, within PfGW456L13_2158at 2363.264 kb on - strand, within PfGW456L13_2158at 2363.264 kb on - strand, within PfGW456L13_2158at 2363.321 kb on + strand, within PfGW456L13_2158at 2363.321 kb on + strand, within PfGW456L13_2158at 2363.321 kb on + strand, within PfGW456L13_2158at 2363.322 kb on - strand, within PfGW456L13_2158at 2363.322 kb on - strand, within PfGW456L13_2158at 2363.322 kb on - strand, within PfGW456L13_2158at 2363.322 kb on - strand, within PfGW456L13_2158at 2363.497 kb on + strandat 2363.497 kb on + strand, within PfGW456L13_2158at 2363.497 kb on + strand, within PfGW456L13_2158at 2363.497 kb on + strand, within PfGW456L13_2158at 2363.497 kb on + strand, within PfGW456L13_2158at 2363.498 kb on - strand, within PfGW456L13_2158at 2363.498 kb on - strand, within PfGW456L13_2158at 2363.498 kb on - strand, within PfGW456L13_2158at 2363.531 kb on - strand, within PfGW456L13_2158at 2363.615 kb on + strandat 2363.633 kb on - strandat 2363.695 kb on - strand, within PfGW456L13_2159at 2363.695 kb on - strand, within PfGW456L13_2159at 2363.880 kb on + strandat 2363.880 kb on + strandat 2363.880 kb on + strandat 2363.881 kb on - strandat 2363.914 kb on - strand, within PfGW456L13_2160at 2364.146 kb on + strand, within PfGW456L13_2160at 2364.147 kb on - strand, within PfGW456L13_2160at 2364.391 kb on + strand, within PfGW456L13_2160at 2364.718 kb on + strand, within PfGW456L13_2160at 2364.718 kb on + strand, within PfGW456L13_2160

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
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2,362,637 + -0.4
2,362,637 + -0.5
2,362,778 + PfGW456L13_2158 0.11 +0.0
2,362,840 + PfGW456L13_2158 0.17 -1.1
2,362,840 + PfGW456L13_2158 0.17 +0.1
2,362,841 - PfGW456L13_2158 0.17 +0.3
2,362,841 - PfGW456L13_2158 0.17 +0.5
2,362,841 - PfGW456L13_2158 0.17 -0.4
2,362,933 - PfGW456L13_2158 0.27 -0.3
2,362,936 + PfGW456L13_2158 0.27 -0.2
2,362,936 + PfGW456L13_2158 0.27 +0.4
2,362,936 + PfGW456L13_2158 0.27 -1.7
2,362,936 + PfGW456L13_2158 0.27 -0.3
2,362,936 + PfGW456L13_2158 0.27 +1.0
2,362,936 + PfGW456L13_2158 0.27 +0.7
2,362,936 + PfGW456L13_2158 0.27 +0.4
2,362,936 + PfGW456L13_2158 0.27 -0.0
2,362,936 + PfGW456L13_2158 0.27 +0.3
2,362,936 + PfGW456L13_2158 0.27 -0.2
2,362,936 + PfGW456L13_2158 0.27 -0.1
2,362,936 + PfGW456L13_2158 0.27 -0.2
2,362,936 + PfGW456L13_2158 0.27 +0.6
2,362,936 + PfGW456L13_2158 0.27 +0.8
2,362,936 + PfGW456L13_2158 0.27 +0.2
2,362,936 + PfGW456L13_2158 0.27 -0.4
2,362,936 + PfGW456L13_2158 0.27 +1.1
2,362,936 + PfGW456L13_2158 0.27 -1.2
2,362,936 + PfGW456L13_2158 0.27 +0.0
2,362,936 + PfGW456L13_2158 0.27 -1.2
2,362,936 + PfGW456L13_2158 0.27 +0.6
2,362,936 + PfGW456L13_2158 0.27 +0.4
2,362,936 + PfGW456L13_2158 0.27 +0.6
2,362,936 + PfGW456L13_2158 0.27 -0.3
2,362,937 - PfGW456L13_2158 0.27 +1.0
2,362,937 - PfGW456L13_2158 0.27 -0.4
2,362,937 - PfGW456L13_2158 0.27 -0.3
2,362,937 - PfGW456L13_2158 0.27 -0.1
2,362,937 - PfGW456L13_2158 0.27 -0.6
2,362,937 - PfGW456L13_2158 0.27 -0.1
2,362,937 - PfGW456L13_2158 0.27 -0.1
2,362,937 - PfGW456L13_2158 0.27 +0.5
2,362,937 - PfGW456L13_2158 0.27 +0.6
2,362,937 - PfGW456L13_2158 0.27 -0.6
2,362,937 - PfGW456L13_2158 0.27 +0.6
2,362,937 - PfGW456L13_2158 0.27 -0.5
2,362,937 - PfGW456L13_2158 0.27 -1.0
2,362,937 - PfGW456L13_2158 0.27 +0.2
2,362,937 - PfGW456L13_2158 0.27 +0.1
2,362,937 - PfGW456L13_2158 0.27 +0.6
2,362,937 - PfGW456L13_2158 0.27 +0.2
2,362,945 + PfGW456L13_2158 0.28 -0.3
2,362,945 + PfGW456L13_2158 0.28 +0.3
2,362,945 + PfGW456L13_2158 0.28 -0.6
2,362,945 + PfGW456L13_2158 0.28 +0.6
2,362,945 + +0.5
2,362,945 + PfGW456L13_2158 0.28 +0.2
2,362,945 + PfGW456L13_2158 0.28 +0.3
2,362,945 + PfGW456L13_2158 0.28 -1.0
2,362,946 - PfGW456L13_2158 0.28 +0.1
2,362,991 + PfGW456L13_2158 0.33 +0.3
2,363,081 + PfGW456L13_2158 0.42 +0.4
2,363,081 + PfGW456L13_2158 0.42 -0.0
2,363,149 + PfGW456L13_2158 0.49 +0.7
2,363,149 + PfGW456L13_2158 0.49 -0.8
2,363,150 - PfGW456L13_2158 0.49 -1.0
2,363,150 - PfGW456L13_2158 0.49 +0.3
2,363,200 + PfGW456L13_2158 0.55 -0.1
2,363,200 + PfGW456L13_2158 0.55 -0.6
2,363,200 + PfGW456L13_2158 0.55 +0.2
2,363,200 + PfGW456L13_2158 0.55 -1.5
2,363,200 + PfGW456L13_2158 0.55 -0.9
2,363,201 - PfGW456L13_2158 0.55 +0.3
2,363,201 - PfGW456L13_2158 0.55 -0.0
2,363,201 - PfGW456L13_2158 0.55 -1.8
2,363,263 + PfGW456L13_2158 0.61 +0.6
2,363,263 + PfGW456L13_2158 0.61 -1.2
2,363,263 + PfGW456L13_2158 0.61 -1.5
2,363,263 + PfGW456L13_2158 0.61 -0.1
2,363,264 - PfGW456L13_2158 0.61 +0.4
2,363,264 - PfGW456L13_2158 0.61 +1.0
2,363,264 - PfGW456L13_2158 0.61 +0.1
2,363,264 - PfGW456L13_2158 0.61 +0.9
2,363,264 - PfGW456L13_2158 0.61 +0.5
2,363,321 + PfGW456L13_2158 0.67 +0.2
2,363,321 + PfGW456L13_2158 0.67 -0.7
2,363,321 + PfGW456L13_2158 0.67 +1.2
2,363,322 - PfGW456L13_2158 0.67 +1.0
2,363,322 - PfGW456L13_2158 0.67 -0.8
2,363,322 - PfGW456L13_2158 0.67 +0.1
2,363,322 - PfGW456L13_2158 0.67 +0.4
2,363,497 + +1.4
2,363,497 + PfGW456L13_2158 0.86 -0.1
2,363,497 + PfGW456L13_2158 0.86 -0.6
2,363,497 + PfGW456L13_2158 0.86 +1.1
2,363,497 + PfGW456L13_2158 0.86 -1.6
2,363,498 - PfGW456L13_2158 0.86 -0.6
2,363,498 - PfGW456L13_2158 0.86 +1.3
2,363,498 - PfGW456L13_2158 0.86 -1.2
2,363,531 - PfGW456L13_2158 0.89 -0.2
2,363,615 + -0.5
2,363,633 - -0.7
2,363,695 - PfGW456L13_2159 0.36 +1.2
2,363,695 - PfGW456L13_2159 0.36 +0.1
2,363,880 + -1.2
2,363,880 + +0.7
2,363,880 + -1.7
2,363,881 - -1.0
2,363,914 - PfGW456L13_2160 0.11 +1.2
2,364,146 + PfGW456L13_2160 0.27 -0.0
2,364,147 - PfGW456L13_2160 0.27 -0.2
2,364,391 + PfGW456L13_2160 0.45 +0.8
2,364,718 + PfGW456L13_2160 0.68 +0.6
2,364,718 + PfGW456L13_2160 0.68 +0.1

Or see this region's nucleotide sequence