Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_182

Experiment: Zinc 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_180 and PfGW456L13_181 are separated by 88 nucleotidesPfGW456L13_181 and PfGW456L13_182 overlap by 10 nucleotidesPfGW456L13_182 and PfGW456L13_183 are separated by 12 nucleotidesPfGW456L13_183 and PfGW456L13_184 are separated by 86 nucleotidesPfGW456L13_184 and PfGW456L13_185 overlap by 32 nucleotides PfGW456L13_180 - 3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17), at 207,057 to 207,896 _180 PfGW456L13_181 - FIG074102: hypothetical protein, at 207,985 to 208,437 _181 PfGW456L13_182 - ADP-ribose pyrophosphatase (EC 3.6.1.13), at 208,428 to 209,045 _182 PfGW456L13_183 - hypothetical protein, at 209,058 to 209,183 _183 PfGW456L13_184 - lipoprotein, putative, at 209,270 to 210,016 _184 PfGW456L13_185 - Predicted hydroxymethylpyrimidine transporter CytX, at 209,985 to 211,277 _185 Position (kb) 208 209 210Strain fitness (log2 ratio) -2 -1 0 1 2at 207.906 kb on + strandat 207.906 kb on + strandat 207.907 kb on - strandat 207.907 kb on - strandat 207.907 kb on - strandat 207.919 kb on + strandat 207.919 kb on + strandat 207.919 kb on + strandat 207.920 kb on - strandat 207.920 kb on - strandat 207.920 kb on - strandat 207.920 kb on - strandat 207.920 kb on - strandat 207.920 kb on - strandat 207.987 kb on - strandat 207.987 kb on - strandat 207.991 kb on + strandat 207.992 kb on - strandat 207.992 kb on - strandat 208.002 kb on - strandat 208.002 kb on - strandat 208.002 kb on - strandat 208.103 kb on + strand, within PfGW456L13_181at 208.103 kb on + strand, within PfGW456L13_181at 208.103 kb on + strand, within PfGW456L13_181at 208.103 kb on + strand, within PfGW456L13_181at 208.103 kb on + strand, within PfGW456L13_181at 208.103 kb on + strand, within PfGW456L13_181at 208.103 kb on + strand, within PfGW456L13_181at 208.103 kb on + strand, within PfGW456L13_181at 208.103 kb on + strand, within PfGW456L13_181at 208.104 kb on - strand, within PfGW456L13_181at 208.104 kb on - strand, within PfGW456L13_181at 208.104 kb on - strand, within PfGW456L13_181at 208.104 kb on - strand, within PfGW456L13_181at 208.104 kb on - strand, within PfGW456L13_181at 208.104 kb on - strand, within PfGW456L13_181at 208.104 kb on - strand, within PfGW456L13_181at 208.104 kb on - strand, within PfGW456L13_181at 208.166 kb on + strand, within PfGW456L13_181at 208.166 kb on + strand, within PfGW456L13_181at 208.167 kb on - strand, within PfGW456L13_181at 208.241 kb on + strand, within PfGW456L13_181at 208.241 kb on + strand, within PfGW456L13_181at 208.242 kb on - strand, within PfGW456L13_181at 208.364 kb on + strand, within PfGW456L13_181at 208.364 kb on + strand, within PfGW456L13_181at 208.429 kb on + strandat 208.430 kb on - strandat 208.430 kb on - strandat 208.608 kb on - strand, within PfGW456L13_182at 208.627 kb on + strand, within PfGW456L13_182at 208.627 kb on + strand, within PfGW456L13_182at 208.628 kb on - strand, within PfGW456L13_182at 208.628 kb on - strand, within PfGW456L13_182at 208.669 kb on + strand, within PfGW456L13_182at 208.669 kb on + strand, within PfGW456L13_182at 208.669 kb on + strand, within PfGW456L13_182at 208.670 kb on - strand, within PfGW456L13_182at 208.864 kb on + strand, within PfGW456L13_182at 208.864 kb on + strand, within PfGW456L13_182at 208.864 kb on + strand, within PfGW456L13_182at 208.878 kb on + strand, within PfGW456L13_182at 208.879 kb on - strand, within PfGW456L13_182at 208.879 kb on - strand, within PfGW456L13_182at 208.972 kb on + strand, within PfGW456L13_182at 208.972 kb on + strand, within PfGW456L13_182at 208.973 kb on - strand, within PfGW456L13_182at 208.973 kb on - strand, within PfGW456L13_182at 208.984 kb on + strandat 209.050 kb on - strandat 209.060 kb on - strandat 209.115 kb on + strand, within PfGW456L13_183at 209.186 kb on + strandat 209.186 kb on + strandat 209.187 kb on - strandat 209.187 kb on - strandat 209.190 kb on + strandat 209.190 kb on + strandat 209.190 kb on + strandat 209.190 kb on + strandat 209.348 kb on + strand, within PfGW456L13_184at 209.348 kb on + strand, within PfGW456L13_184at 209.348 kb on + strand, within PfGW456L13_184at 209.349 kb on - strand, within PfGW456L13_184at 209.591 kb on + strand, within PfGW456L13_184at 209.591 kb on + strand, within PfGW456L13_184at 209.591 kb on + strand, within PfGW456L13_184at 209.591 kb on + strand, within PfGW456L13_184at 209.591 kb on + strand, within PfGW456L13_184at 209.591 kb on + strand, within PfGW456L13_184at 209.591 kb on + strand, within PfGW456L13_184at 209.592 kb on - strand, within PfGW456L13_184at 209.592 kb on - strand, within PfGW456L13_184at 209.592 kb on - strand, within PfGW456L13_184at 209.592 kb on - strand, within PfGW456L13_184at 209.607 kb on + strand, within PfGW456L13_184at 209.607 kb on + strand, within PfGW456L13_184at 209.607 kb on + strand, within PfGW456L13_184at 209.608 kb on - strand, within PfGW456L13_184at 209.608 kb on - strand, within PfGW456L13_184at 209.608 kb on - strand, within PfGW456L13_184at 209.608 kb on - strand, within PfGW456L13_184at 209.651 kb on + strand, within PfGW456L13_184at 209.651 kb on + strand, within PfGW456L13_184at 209.651 kb on + strand, within PfGW456L13_184at 209.651 kb on + strand, within PfGW456L13_184at 209.651 kb on + strand, within PfGW456L13_184at 209.702 kb on + strand, within PfGW456L13_184at 209.703 kb on - strand, within PfGW456L13_184at 209.703 kb on - strand, within PfGW456L13_184at 209.703 kb on - strand, within PfGW456L13_184at 209.703 kb on - strand, within PfGW456L13_184at 209.703 kb on - strand, within PfGW456L13_184at 209.719 kb on + strand, within PfGW456L13_184at 209.719 kb on + strand, within PfGW456L13_184at 209.719 kb on + strand, within PfGW456L13_184at 209.719 kb on + strand, within PfGW456L13_184at 209.720 kb on - strand, within PfGW456L13_184at 209.720 kb on - strand, within PfGW456L13_184at 209.720 kb on - strand, within PfGW456L13_184at 209.720 kb on - strand, within PfGW456L13_184at 209.720 kb on - strand, within PfGW456L13_184at 209.720 kb on - strand, within PfGW456L13_184at 209.720 kb on - strand, within PfGW456L13_184at 209.720 kb on - strand, within PfGW456L13_184at 209.885 kb on + strand, within PfGW456L13_184at 209.907 kb on - strand, within PfGW456L13_184at 210.011 kb on - strandat 210.033 kb on + strandat 210.033 kb on + strandat 210.033 kb on + strandat 210.034 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
remove
207,906 + +0.2
207,906 + -0.0
207,907 - -0.4
207,907 - -0.2
207,907 - +0.0
207,919 + -0.5
207,919 + -0.0
207,919 + -0.2
207,920 - -0.5
207,920 - +1.3
207,920 - -0.8
207,920 - +1.2
207,920 - +0.4
207,920 - -0.2
207,987 - -1.6
207,987 - +0.6
207,991 + +0.5
207,992 - +0.8
207,992 - +0.5
208,002 - +1.4
208,002 - +0.2
208,002 - -0.1
208,103 + PfGW456L13_181 0.26 +0.8
208,103 + PfGW456L13_181 0.26 +0.4
208,103 + PfGW456L13_181 0.26 -0.3
208,103 + PfGW456L13_181 0.26 -0.2
208,103 + PfGW456L13_181 0.26 +0.1
208,103 + PfGW456L13_181 0.26 +0.5
208,103 + PfGW456L13_181 0.26 +0.3
208,103 + PfGW456L13_181 0.26 -0.9
208,103 + PfGW456L13_181 0.26 +1.2
208,104 - PfGW456L13_181 0.26 +0.7
208,104 - PfGW456L13_181 0.26 -0.3
208,104 - PfGW456L13_181 0.26 +1.0
208,104 - PfGW456L13_181 0.26 -0.0
208,104 - PfGW456L13_181 0.26 +0.4
208,104 - PfGW456L13_181 0.26 +0.1
208,104 - PfGW456L13_181 0.26 -0.7
208,104 - PfGW456L13_181 0.26 -1.0
208,166 + PfGW456L13_181 0.40 -0.4
208,166 + PfGW456L13_181 0.40 -0.4
208,167 - PfGW456L13_181 0.40 -0.5
208,241 + PfGW456L13_181 0.57 +0.6
208,241 + PfGW456L13_181 0.57 -0.1
208,242 - PfGW456L13_181 0.57 -0.6
208,364 + PfGW456L13_181 0.84 -0.5
208,364 + PfGW456L13_181 0.84 +0.2
208,429 + -0.7
208,430 - -0.2
208,430 - -1.1
208,608 - PfGW456L13_182 0.29 +0.6
208,627 + PfGW456L13_182 0.32 -0.5
208,627 + PfGW456L13_182 0.32 -0.8
208,628 - PfGW456L13_182 0.32 -1.2
208,628 - PfGW456L13_182 0.32 +0.8
208,669 + PfGW456L13_182 0.39 -0.1
208,669 + PfGW456L13_182 0.39 +2.2
208,669 + PfGW456L13_182 0.39 +1.5
208,670 - PfGW456L13_182 0.39 +1.0
208,864 + PfGW456L13_182 0.71 -1.4
208,864 + PfGW456L13_182 0.71 +1.5
208,864 + PfGW456L13_182 0.71 -0.2
208,878 + PfGW456L13_182 0.73 -0.5
208,879 - PfGW456L13_182 0.73 -0.7
208,879 - PfGW456L13_182 0.73 +0.6
208,972 + PfGW456L13_182 0.88 +0.3
208,972 + PfGW456L13_182 0.88 +1.0
208,973 - PfGW456L13_182 0.88 +1.0
208,973 - PfGW456L13_182 0.88 +0.4
208,984 + -0.6
209,050 - -0.0
209,060 - +0.6
209,115 + PfGW456L13_183 0.45 +0.7
209,186 + +0.1
209,186 + -0.2
209,187 - -1.0
209,187 - +1.8
209,190 + +0.2
209,190 + +0.5
209,190 + +0.2
209,190 + -0.4
209,348 + PfGW456L13_184 0.10 +0.8
209,348 + PfGW456L13_184 0.10 +0.5
209,348 + PfGW456L13_184 0.10 -0.5
209,349 - PfGW456L13_184 0.11 -0.1
209,591 + PfGW456L13_184 0.43 +0.0
209,591 + PfGW456L13_184 0.43 -0.3
209,591 + PfGW456L13_184 0.43 -2.2
209,591 + PfGW456L13_184 0.43 -0.1
209,591 + PfGW456L13_184 0.43 +1.6
209,591 + PfGW456L13_184 0.43 +0.7
209,591 + PfGW456L13_184 0.43 +0.1
209,592 - PfGW456L13_184 0.43 -0.4
209,592 - PfGW456L13_184 0.43 +0.4
209,592 - PfGW456L13_184 0.43 -0.2
209,592 - PfGW456L13_184 0.43 -1.6
209,607 + PfGW456L13_184 0.45 -0.2
209,607 + PfGW456L13_184 0.45 +0.2
209,607 + PfGW456L13_184 0.45 +0.4
209,608 - PfGW456L13_184 0.45 +0.4
209,608 - PfGW456L13_184 0.45 +0.1
209,608 - PfGW456L13_184 0.45 +0.6
209,608 - PfGW456L13_184 0.45 -1.5
209,651 + PfGW456L13_184 0.51 +0.4
209,651 + PfGW456L13_184 0.51 +0.5
209,651 + PfGW456L13_184 0.51 -0.6
209,651 + PfGW456L13_184 0.51 +0.2
209,651 + PfGW456L13_184 0.51 +0.4
209,702 + PfGW456L13_184 0.58 -0.2
209,703 - PfGW456L13_184 0.58 +0.5
209,703 - PfGW456L13_184 0.58 -1.6
209,703 - PfGW456L13_184 0.58 -0.7
209,703 - PfGW456L13_184 0.58 +1.2
209,703 - PfGW456L13_184 0.58 +1.2
209,719 + PfGW456L13_184 0.60 -1.0
209,719 + PfGW456L13_184 0.60 -1.1
209,719 + PfGW456L13_184 0.60 +0.7
209,719 + PfGW456L13_184 0.60 +0.1
209,720 - PfGW456L13_184 0.60 +0.7
209,720 - PfGW456L13_184 0.60 -0.1
209,720 - PfGW456L13_184 0.60 -0.0
209,720 - PfGW456L13_184 0.60 -2.0
209,720 - PfGW456L13_184 0.60 -0.8
209,720 - PfGW456L13_184 0.60 -0.7
209,720 - PfGW456L13_184 0.60 +0.6
209,720 - PfGW456L13_184 0.60 +0.9
209,885 + PfGW456L13_184 0.82 +0.4
209,907 - PfGW456L13_184 0.85 -0.3
210,011 - +0.7
210,033 + +1.1
210,033 + -0.1
210,033 + -1.6
210,034 - +0.2

Or see this region's nucleotide sequence