Experiment: Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_1523 and PfGW456L13_1524 are separated by 710 nucleotides PfGW456L13_1524 and PfGW456L13_1525 are separated by 22 nucleotides
PfGW456L13_1523 - Poly(A) polymerase (EC 2.7.7.19), at 1,674,029 to 1,675,429
_1523
PfGW456L13_1524 - Two-component sensor CbrB: intrcellular carbon:nitrogen balance, at 1,676,140 to 1,677,573
_1524
PfGW456L13_1525 - Two-component sensor CbrA: intrcellular carbon:nitrogen balance, at 1,677,596 to 1,680,544
_1525
Position (kb)
1676
1677
1678 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1675.261 kb on - strand, within PfGW456L13_1523 at 1675.452 kb on - strand at 1675.452 kb on - strand at 1675.503 kb on + strand at 1675.519 kb on + strand at 1675.519 kb on + strand at 1675.520 kb on - strand at 1675.533 kb on + strand at 1675.533 kb on + strand at 1675.533 kb on + strand at 1675.533 kb on + strand at 1675.534 kb on - strand at 1675.534 kb on - strand at 1675.534 kb on - strand at 1675.542 kb on + strand at 1675.542 kb on + strand at 1675.542 kb on + strand at 1675.542 kb on + strand at 1675.542 kb on + strand at 1675.543 kb on - strand at 1675.543 kb on - strand at 1675.543 kb on - strand at 1675.543 kb on - strand at 1675.543 kb on - strand at 1675.543 kb on - strand at 1675.543 kb on - strand at 1675.543 kb on - strand at 1675.543 kb on - strand at 1675.605 kb on + strand at 1675.605 kb on + strand at 1675.605 kb on + strand at 1675.605 kb on + strand at 1675.605 kb on + strand at 1675.606 kb on - strand at 1675.606 kb on - strand at 1675.619 kb on - strand at 1675.619 kb on - strand at 1675.775 kb on + strand at 1675.775 kb on + strand at 1675.776 kb on - strand at 1675.824 kb on + strand at 1675.825 kb on - strand at 1675.825 kb on - strand at 1675.850 kb on + strand at 1675.851 kb on - strand at 1675.851 kb on - strand at 1675.877 kb on + strand at 1675.878 kb on - strand at 1675.908 kb on - strand at 1675.908 kb on - strand at 1675.908 kb on - strand at 1675.908 kb on - strand at 1675.929 kb on + strand at 1675.930 kb on - strand at 1675.940 kb on + strand at 1675.941 kb on - strand at 1675.949 kb on + strand at 1675.951 kb on + strand at 1675.951 kb on + strand at 1675.951 kb on + strand at 1676.052 kb on + strand at 1676.053 kb on - strand at 1676.087 kb on + strand at 1676.087 kb on + strand at 1676.088 kb on - strand at 1676.135 kb on - strand at 1676.288 kb on + strand, within PfGW456L13_1524 at 1676.288 kb on + strand, within PfGW456L13_1524 at 1676.289 kb on - strand, within PfGW456L13_1524 at 1676.289 kb on - strand, within PfGW456L13_1524 at 1676.289 kb on - strand, within PfGW456L13_1524 at 1676.332 kb on - strand, within PfGW456L13_1524 at 1676.657 kb on + strand, within PfGW456L13_1524 at 1676.658 kb on - strand, within PfGW456L13_1524 at 1676.658 kb on - strand, within PfGW456L13_1524 at 1676.658 kb on - strand, within PfGW456L13_1524 at 1676.658 kb on - strand, within PfGW456L13_1524 at 1676.785 kb on + strand, within PfGW456L13_1524 at 1677.098 kb on + strand, within PfGW456L13_1524 at 1677.217 kb on + strand, within PfGW456L13_1524 at 1677.218 kb on - strand, within PfGW456L13_1524 at 1677.290 kb on + strand, within PfGW456L13_1524 at 1677.290 kb on + strand, within PfGW456L13_1524 at 1677.290 kb on + strand, within PfGW456L13_1524 at 1677.291 kb on - strand, within PfGW456L13_1524 at 1677.341 kb on + strand, within PfGW456L13_1524 at 1677.342 kb on - strand, within PfGW456L13_1524 at 1677.724 kb on - strand at 1677.724 kb on - strand at 1677.814 kb on + strand at 1677.815 kb on - strand at 1677.933 kb on - strand, within PfGW456L13_1525 at 1677.990 kb on + strand, within PfGW456L13_1525 at 1677.991 kb on - strand, within PfGW456L13_1525 at 1677.991 kb on - strand, within PfGW456L13_1525 at 1678.516 kb on + strand, within PfGW456L13_1525
Per-strain Table
Position Strand Gene LocusTag Fraction Zinc 1 mM remove 1,675,261 - PfGW456L13_1523 0.88 -1.8 1,675,452 - +0.3 1,675,452 - -0.8 1,675,503 + -0.2 1,675,519 + +0.9 1,675,519 + +1.2 1,675,520 - -0.5 1,675,533 + -0.6 1,675,533 + -1.4 1,675,533 + +0.2 1,675,533 + +0.8 1,675,534 - +1.1 1,675,534 - -0.4 1,675,534 - -0.7 1,675,542 + +0.1 1,675,542 + +0.3 1,675,542 + +2.0 1,675,542 + -0.1 1,675,542 + +0.8 1,675,543 - +1.2 1,675,543 - +1.0 1,675,543 - +0.3 1,675,543 - -0.8 1,675,543 - +0.3 1,675,543 - -0.3 1,675,543 - +0.5 1,675,543 - +1.3 1,675,543 - -0.8 1,675,605 + -0.2 1,675,605 + -0.1 1,675,605 + +0.2 1,675,605 + -1.4 1,675,605 + +1.4 1,675,606 - -1.0 1,675,606 - -0.7 1,675,619 - -0.6 1,675,619 - -0.9 1,675,775 + -0.4 1,675,775 + -1.8 1,675,776 - +0.4 1,675,824 + -1.2 1,675,825 - +0.0 1,675,825 - +0.3 1,675,850 + -0.4 1,675,851 - -0.6 1,675,851 - +0.1 1,675,877 + +0.3 1,675,878 - +0.1 1,675,908 - +0.3 1,675,908 - +0.4 1,675,908 - +0.1 1,675,908 - +0.5 1,675,929 + -0.5 1,675,930 - +0.1 1,675,940 + -1.6 1,675,941 - -0.1 1,675,949 + -0.8 1,675,951 + -0.4 1,675,951 + -0.9 1,675,951 + -0.1 1,676,052 + +0.6 1,676,053 - -0.4 1,676,087 + -0.3 1,676,087 + -0.7 1,676,088 - +0.4 1,676,135 - +0.1 1,676,288 + PfGW456L13_1524 0.10 +0.9 1,676,288 + PfGW456L13_1524 0.10 -0.1 1,676,289 - PfGW456L13_1524 0.10 -0.6 1,676,289 - PfGW456L13_1524 0.10 +0.5 1,676,289 - PfGW456L13_1524 0.10 -1.7 1,676,332 - PfGW456L13_1524 0.13 +1.4 1,676,657 + PfGW456L13_1524 0.36 +0.2 1,676,658 - PfGW456L13_1524 0.36 +0.8 1,676,658 - PfGW456L13_1524 0.36 -0.0 1,676,658 - PfGW456L13_1524 0.36 +1.0 1,676,658 - PfGW456L13_1524 0.36 +0.6 1,676,785 + PfGW456L13_1524 0.45 +0.1 1,677,098 + PfGW456L13_1524 0.67 -0.7 1,677,217 + PfGW456L13_1524 0.75 +0.5 1,677,218 - PfGW456L13_1524 0.75 +1.3 1,677,290 + PfGW456L13_1524 0.80 +2.1 1,677,290 + PfGW456L13_1524 0.80 +0.8 1,677,290 + PfGW456L13_1524 0.80 +0.8 1,677,291 - PfGW456L13_1524 0.80 +0.6 1,677,341 + PfGW456L13_1524 0.84 -0.5 1,677,342 - PfGW456L13_1524 0.84 -0.1 1,677,724 - -0.4 1,677,724 - -1.0 1,677,814 + +1.1 1,677,815 - +0.0 1,677,933 - PfGW456L13_1525 0.11 +1.3 1,677,990 + PfGW456L13_1525 0.13 -0.1 1,677,991 - PfGW456L13_1525 0.13 +0.3 1,677,991 - PfGW456L13_1525 0.13 -0.1 1,678,516 + PfGW456L13_1525 0.31 -0.2
Or see this region's nucleotide sequence