Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1501

Experiment: Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1500 and PfGW456L13_1501 are separated by 3 nucleotidesPfGW456L13_1501 and PfGW456L13_1502 are separated by 16 nucleotides PfGW456L13_1500 - benzoate MFS transporter BenK, at 1,650,921 to 1,652,264 _1500 PfGW456L13_1501 - Benzoate transport protein, at 1,652,268 to 1,653,488 _1501 PfGW456L13_1502 - benzoate-specific porin, at 1,653,505 to 1,654,773 _1502 Position (kb) 1652 1653 1654Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1651.304 kb on + strand, within PfGW456L13_1500at 1651.330 kb on - strand, within PfGW456L13_1500at 1651.330 kb on - strand, within PfGW456L13_1500at 1651.455 kb on + strand, within PfGW456L13_1500at 1651.455 kb on + strand, within PfGW456L13_1500at 1651.455 kb on + strand, within PfGW456L13_1500at 1651.455 kb on + strand, within PfGW456L13_1500at 1651.456 kb on - strand, within PfGW456L13_1500at 1651.497 kb on + strand, within PfGW456L13_1500at 1651.497 kb on + strand, within PfGW456L13_1500at 1651.497 kb on + strand, within PfGW456L13_1500at 1651.497 kb on + strand, within PfGW456L13_1500at 1651.497 kb on + strand, within PfGW456L13_1500at 1651.497 kb on + strand, within PfGW456L13_1500at 1651.497 kb on + strandat 1651.498 kb on - strand, within PfGW456L13_1500at 1651.498 kb on - strand, within PfGW456L13_1500at 1651.498 kb on - strand, within PfGW456L13_1500at 1651.498 kb on - strand, within PfGW456L13_1500at 1651.498 kb on - strand, within PfGW456L13_1500at 1651.559 kb on + strand, within PfGW456L13_1500at 1651.559 kb on + strand, within PfGW456L13_1500at 1651.559 kb on + strand, within PfGW456L13_1500at 1651.560 kb on - strand, within PfGW456L13_1500at 1651.584 kb on + strand, within PfGW456L13_1500at 1651.585 kb on - strand, within PfGW456L13_1500at 1651.585 kb on - strand, within PfGW456L13_1500at 1651.585 kb on - strand, within PfGW456L13_1500at 1651.725 kb on + strand, within PfGW456L13_1500at 1651.725 kb on + strand, within PfGW456L13_1500at 1651.725 kb on + strand, within PfGW456L13_1500at 1651.726 kb on - strand, within PfGW456L13_1500at 1651.726 kb on - strand, within PfGW456L13_1500at 1651.726 kb on - strand, within PfGW456L13_1500at 1651.950 kb on + strand, within PfGW456L13_1500at 1651.950 kb on + strand, within PfGW456L13_1500at 1651.950 kb on + strand, within PfGW456L13_1500at 1651.950 kb on + strand, within PfGW456L13_1500at 1651.950 kb on + strand, within PfGW456L13_1500at 1651.951 kb on - strand, within PfGW456L13_1500at 1651.951 kb on - strand, within PfGW456L13_1500at 1651.951 kb on - strand, within PfGW456L13_1500at 1651.951 kb on - strand, within PfGW456L13_1500at 1652.004 kb on + strand, within PfGW456L13_1500at 1652.004 kb on + strand, within PfGW456L13_1500at 1652.004 kb on + strand, within PfGW456L13_1500at 1652.005 kb on - strand, within PfGW456L13_1500at 1652.005 kb on - strand, within PfGW456L13_1500at 1652.005 kb on - strand, within PfGW456L13_1500at 1652.005 kb on - strand, within PfGW456L13_1500at 1652.025 kb on + strand, within PfGW456L13_1500at 1652.562 kb on + strand, within PfGW456L13_1501at 1652.563 kb on - strand, within PfGW456L13_1501at 1652.746 kb on - strand, within PfGW456L13_1501at 1653.020 kb on + strand, within PfGW456L13_1501at 1653.165 kb on + strand, within PfGW456L13_1501at 1653.165 kb on + strand, within PfGW456L13_1501at 1653.166 kb on - strand, within PfGW456L13_1501at 1653.431 kb on + strandat 1653.492 kb on + strandat 1653.492 kb on + strandat 1653.492 kb on + strandat 1653.492 kb on + strandat 1653.492 kb on + strandat 1653.492 kb on + strandat 1653.492 kb on + strandat 1653.492 kb on + strandat 1653.492 kb on + strandat 1653.492 kb on + strandat 1653.493 kb on - strandat 1653.493 kb on - strandat 1653.493 kb on - strandat 1653.493 kb on - strandat 1653.493 kb on - strandat 1653.493 kb on - strandat 1653.493 kb on - strandat 1653.493 kb on - strandat 1653.493 kb on - strandat 1653.597 kb on + strandat 1653.634 kb on + strand, within PfGW456L13_1502at 1653.634 kb on + strand, within PfGW456L13_1502at 1653.634 kb on + strand, within PfGW456L13_1502at 1653.637 kb on + strand, within PfGW456L13_1502at 1653.637 kb on + strand, within PfGW456L13_1502at 1653.637 kb on + strand, within PfGW456L13_1502at 1653.637 kb on + strand, within PfGW456L13_1502at 1653.637 kb on + strand, within PfGW456L13_1502at 1653.637 kb on + strand, within PfGW456L13_1502at 1653.638 kb on - strand, within PfGW456L13_1502at 1653.638 kb on - strand, within PfGW456L13_1502at 1653.638 kb on - strand, within PfGW456L13_1502at 1653.638 kb on - strand, within PfGW456L13_1502at 1653.652 kb on + strand, within PfGW456L13_1502at 1653.653 kb on - strand, within PfGW456L13_1502at 1653.653 kb on - strand, within PfGW456L13_1502at 1653.733 kb on + strand, within PfGW456L13_1502at 1653.734 kb on - strand, within PfGW456L13_1502at 1653.817 kb on - strand, within PfGW456L13_1502at 1653.862 kb on + strand, within PfGW456L13_1502at 1653.862 kb on + strand, within PfGW456L13_1502at 1653.862 kb on + strand, within PfGW456L13_1502at 1653.862 kb on + strand, within PfGW456L13_1502at 1653.862 kb on + strand, within PfGW456L13_1502at 1653.862 kb on + strand, within PfGW456L13_1502at 1653.862 kb on + strand, within PfGW456L13_1502at 1653.862 kb on + strand, within PfGW456L13_1502at 1653.863 kb on - strand, within PfGW456L13_1502at 1653.863 kb on - strand, within PfGW456L13_1502at 1653.863 kb on - strand, within PfGW456L13_1502at 1653.863 kb on - strand, within PfGW456L13_1502at 1653.863 kb on - strand, within PfGW456L13_1502at 1653.863 kb on - strand, within PfGW456L13_1502at 1653.863 kb on - strand, within PfGW456L13_1502at 1653.863 kb on - strand, within PfGW456L13_1502at 1653.863 kb on - strand, within PfGW456L13_1502at 1653.895 kb on + strand, within PfGW456L13_1502at 1653.896 kb on - strand, within PfGW456L13_1502at 1653.896 kb on - strand, within PfGW456L13_1502at 1653.896 kb on - strand, within PfGW456L13_1502at 1653.982 kb on + strand, within PfGW456L13_1502at 1653.982 kb on + strand, within PfGW456L13_1502at 1653.983 kb on - strand, within PfGW456L13_1502at 1654.212 kb on + strand, within PfGW456L13_1502at 1654.212 kb on + strand, within PfGW456L13_1502at 1654.212 kb on + strand, within PfGW456L13_1502at 1654.212 kb on + strand, within PfGW456L13_1502at 1654.213 kb on - strand, within PfGW456L13_1502at 1654.213 kb on - strand, within PfGW456L13_1502at 1654.213 kb on - strand, within PfGW456L13_1502at 1654.213 kb on - strand, within PfGW456L13_1502at 1654.213 kb on - strand, within PfGW456L13_1502at 1654.213 kb on - strand, within PfGW456L13_1502at 1654.216 kb on + strand, within PfGW456L13_1502at 1654.216 kb on + strand, within PfGW456L13_1502at 1654.216 kb on + strand, within PfGW456L13_1502at 1654.216 kb on + strand, within PfGW456L13_1502at 1654.216 kb on + strand, within PfGW456L13_1502at 1654.216 kb on + strand, within PfGW456L13_1502at 1654.217 kb on - strandat 1654.217 kb on - strand, within PfGW456L13_1502at 1654.217 kb on - strand, within PfGW456L13_1502at 1654.217 kb on - strand, within PfGW456L13_1502at 1654.217 kb on - strand, within PfGW456L13_1502at 1654.217 kb on - strand, within PfGW456L13_1502at 1654.217 kb on - strand, within PfGW456L13_1502at 1654.238 kb on + strand, within PfGW456L13_1502at 1654.239 kb on - strand, within PfGW456L13_1502at 1654.291 kb on + strand, within PfGW456L13_1502at 1654.292 kb on - strand, within PfGW456L13_1502at 1654.292 kb on - strand, within PfGW456L13_1502at 1654.380 kb on + strand, within PfGW456L13_1502at 1654.380 kb on + strand, within PfGW456L13_1502at 1654.381 kb on - strand, within PfGW456L13_1502at 1654.387 kb on + strand, within PfGW456L13_1502at 1654.433 kb on + strand, within PfGW456L13_1502at 1654.434 kb on - strand, within PfGW456L13_1502at 1654.434 kb on - strand, within PfGW456L13_1502at 1654.434 kb on - strand, within PfGW456L13_1502at 1654.474 kb on + strand, within PfGW456L13_1502at 1654.474 kb on + strand, within PfGW456L13_1502at 1654.474 kb on + strand, within PfGW456L13_1502at 1654.474 kb on + strand, within PfGW456L13_1502at 1654.474 kb on + strand, within PfGW456L13_1502at 1654.475 kb on - strand, within PfGW456L13_1502at 1654.475 kb on - strand, within PfGW456L13_1502

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
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1,651,304 + PfGW456L13_1500 0.28 +1.3
1,651,330 - PfGW456L13_1500 0.30 -0.0
1,651,330 - PfGW456L13_1500 0.30 -0.1
1,651,455 + PfGW456L13_1500 0.40 -0.7
1,651,455 + PfGW456L13_1500 0.40 +0.2
1,651,455 + PfGW456L13_1500 0.40 +0.7
1,651,455 + PfGW456L13_1500 0.40 -0.6
1,651,456 - PfGW456L13_1500 0.40 +0.6
1,651,497 + PfGW456L13_1500 0.43 +0.3
1,651,497 + PfGW456L13_1500 0.43 -0.6
1,651,497 + PfGW456L13_1500 0.43 -0.4
1,651,497 + PfGW456L13_1500 0.43 +0.2
1,651,497 + PfGW456L13_1500 0.43 -1.0
1,651,497 + PfGW456L13_1500 0.43 +0.1
1,651,497 + +3.2
1,651,498 - PfGW456L13_1500 0.43 +1.5
1,651,498 - PfGW456L13_1500 0.43 +0.3
1,651,498 - PfGW456L13_1500 0.43 +0.6
1,651,498 - PfGW456L13_1500 0.43 +0.8
1,651,498 - PfGW456L13_1500 0.43 -2.0
1,651,559 + PfGW456L13_1500 0.47 -0.8
1,651,559 + PfGW456L13_1500 0.47 +0.0
1,651,559 + PfGW456L13_1500 0.47 +0.8
1,651,560 - PfGW456L13_1500 0.48 +0.3
1,651,584 + PfGW456L13_1500 0.49 +0.3
1,651,585 - PfGW456L13_1500 0.49 +1.2
1,651,585 - PfGW456L13_1500 0.49 +0.3
1,651,585 - PfGW456L13_1500 0.49 -1.4
1,651,725 + PfGW456L13_1500 0.60 -0.3
1,651,725 + PfGW456L13_1500 0.60 -0.7
1,651,725 + PfGW456L13_1500 0.60 +0.2
1,651,726 - PfGW456L13_1500 0.60 -0.7
1,651,726 - PfGW456L13_1500 0.60 -0.1
1,651,726 - PfGW456L13_1500 0.60 +0.2
1,651,950 + PfGW456L13_1500 0.77 -0.6
1,651,950 + PfGW456L13_1500 0.77 +0.2
1,651,950 + PfGW456L13_1500 0.77 +0.2
1,651,950 + PfGW456L13_1500 0.77 +0.9
1,651,950 + PfGW456L13_1500 0.77 +0.4
1,651,951 - PfGW456L13_1500 0.77 -0.0
1,651,951 - PfGW456L13_1500 0.77 +0.0
1,651,951 - PfGW456L13_1500 0.77 -0.2
1,651,951 - PfGW456L13_1500 0.77 -0.9
1,652,004 + PfGW456L13_1500 0.81 +0.1
1,652,004 + PfGW456L13_1500 0.81 +0.1
1,652,004 + PfGW456L13_1500 0.81 +0.2
1,652,005 - PfGW456L13_1500 0.81 -0.0
1,652,005 - PfGW456L13_1500 0.81 -0.5
1,652,005 - PfGW456L13_1500 0.81 +0.0
1,652,005 - PfGW456L13_1500 0.81 -0.1
1,652,025 + PfGW456L13_1500 0.82 +0.1
1,652,562 + PfGW456L13_1501 0.24 -0.6
1,652,563 - PfGW456L13_1501 0.24 +0.8
1,652,746 - PfGW456L13_1501 0.39 +0.4
1,653,020 + PfGW456L13_1501 0.62 +0.5
1,653,165 + PfGW456L13_1501 0.73 +0.2
1,653,165 + PfGW456L13_1501 0.73 +1.5
1,653,166 - PfGW456L13_1501 0.74 +0.3
1,653,431 + -0.3
1,653,492 + +0.3
1,653,492 + -0.1
1,653,492 + -0.1
1,653,492 + +0.4
1,653,492 + -0.3
1,653,492 + +0.1
1,653,492 + -0.1
1,653,492 + +2.2
1,653,492 + -0.3
1,653,492 + -0.1
1,653,493 - +0.4
1,653,493 - +1.0
1,653,493 - +1.0
1,653,493 - -0.3
1,653,493 - +0.9
1,653,493 - +0.1
1,653,493 - -0.5
1,653,493 - +0.1
1,653,493 - +0.2
1,653,597 + -0.1
1,653,634 + PfGW456L13_1502 0.10 -1.6
1,653,634 + PfGW456L13_1502 0.10 -0.7
1,653,634 + PfGW456L13_1502 0.10 -0.6
1,653,637 + PfGW456L13_1502 0.10 +0.1
1,653,637 + PfGW456L13_1502 0.10 -1.2
1,653,637 + PfGW456L13_1502 0.10 -0.5
1,653,637 + PfGW456L13_1502 0.10 +0.9
1,653,637 + PfGW456L13_1502 0.10 +0.2
1,653,637 + PfGW456L13_1502 0.10 +0.1
1,653,638 - PfGW456L13_1502 0.10 -0.1
1,653,638 - PfGW456L13_1502 0.10 -0.2
1,653,638 - PfGW456L13_1502 0.10 +0.4
1,653,638 - PfGW456L13_1502 0.10 -0.6
1,653,652 + PfGW456L13_1502 0.12 +0.8
1,653,653 - PfGW456L13_1502 0.12 +0.8
1,653,653 - PfGW456L13_1502 0.12 -1.1
1,653,733 + PfGW456L13_1502 0.18 -0.1
1,653,734 - PfGW456L13_1502 0.18 +0.7
1,653,817 - PfGW456L13_1502 0.25 -0.8
1,653,862 + PfGW456L13_1502 0.28 +0.2
1,653,862 + PfGW456L13_1502 0.28 +0.9
1,653,862 + PfGW456L13_1502 0.28 -0.5
1,653,862 + PfGW456L13_1502 0.28 +0.0
1,653,862 + PfGW456L13_1502 0.28 -0.6
1,653,862 + PfGW456L13_1502 0.28 +0.5
1,653,862 + PfGW456L13_1502 0.28 +0.8
1,653,862 + PfGW456L13_1502 0.28 +1.0
1,653,863 - PfGW456L13_1502 0.28 +0.8
1,653,863 - PfGW456L13_1502 0.28 -0.0
1,653,863 - PfGW456L13_1502 0.28 +0.4
1,653,863 - PfGW456L13_1502 0.28 +0.5
1,653,863 - PfGW456L13_1502 0.28 -0.3
1,653,863 - PfGW456L13_1502 0.28 +0.1
1,653,863 - PfGW456L13_1502 0.28 +0.3
1,653,863 - PfGW456L13_1502 0.28 +0.7
1,653,863 - PfGW456L13_1502 0.28 +1.3
1,653,895 + PfGW456L13_1502 0.31 +0.8
1,653,896 - PfGW456L13_1502 0.31 -0.3
1,653,896 - PfGW456L13_1502 0.31 +0.1
1,653,896 - PfGW456L13_1502 0.31 +0.2
1,653,982 + PfGW456L13_1502 0.38 +1.3
1,653,982 + PfGW456L13_1502 0.38 -0.2
1,653,983 - PfGW456L13_1502 0.38 +0.2
1,654,212 + PfGW456L13_1502 0.56 +0.2
1,654,212 + PfGW456L13_1502 0.56 +0.0
1,654,212 + PfGW456L13_1502 0.56 -0.2
1,654,212 + PfGW456L13_1502 0.56 -0.2
1,654,213 - PfGW456L13_1502 0.56 +0.5
1,654,213 - PfGW456L13_1502 0.56 +0.2
1,654,213 - PfGW456L13_1502 0.56 -0.2
1,654,213 - PfGW456L13_1502 0.56 -0.2
1,654,213 - PfGW456L13_1502 0.56 +0.5
1,654,213 - PfGW456L13_1502 0.56 +0.9
1,654,216 + PfGW456L13_1502 0.56 -0.0
1,654,216 + PfGW456L13_1502 0.56 +0.7
1,654,216 + PfGW456L13_1502 0.56 +1.0
1,654,216 + PfGW456L13_1502 0.56 +0.5
1,654,216 + PfGW456L13_1502 0.56 +0.7
1,654,216 + PfGW456L13_1502 0.56 -0.8
1,654,217 - +1.2
1,654,217 - PfGW456L13_1502 0.56 -0.5
1,654,217 - PfGW456L13_1502 0.56 +0.4
1,654,217 - PfGW456L13_1502 0.56 +0.7
1,654,217 - PfGW456L13_1502 0.56 -0.0
1,654,217 - PfGW456L13_1502 0.56 -0.8
1,654,217 - PfGW456L13_1502 0.56 -0.3
1,654,238 + PfGW456L13_1502 0.58 +1.4
1,654,239 - PfGW456L13_1502 0.58 -0.3
1,654,291 + PfGW456L13_1502 0.62 -0.7
1,654,292 - PfGW456L13_1502 0.62 -0.6
1,654,292 - PfGW456L13_1502 0.62 +0.3
1,654,380 + PfGW456L13_1502 0.69 +0.3
1,654,380 + PfGW456L13_1502 0.69 -0.6
1,654,381 - PfGW456L13_1502 0.69 -0.3
1,654,387 + PfGW456L13_1502 0.70 +0.3
1,654,433 + PfGW456L13_1502 0.73 +1.0
1,654,434 - PfGW456L13_1502 0.73 +0.1
1,654,434 - PfGW456L13_1502 0.73 +1.2
1,654,434 - PfGW456L13_1502 0.73 +0.3
1,654,474 + PfGW456L13_1502 0.76 +0.1
1,654,474 + PfGW456L13_1502 0.76 -0.8
1,654,474 + PfGW456L13_1502 0.76 -0.5
1,654,474 + PfGW456L13_1502 0.76 -0.3
1,654,474 + PfGW456L13_1502 0.76 +0.5
1,654,475 - PfGW456L13_1502 0.76 -0.2
1,654,475 - PfGW456L13_1502 0.76 -0.8

Or see this region's nucleotide sequence