Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_145

Experiment: Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_144 and PfGW456L13_5158 are separated by 225 nucleotidesPfGW456L13_5158 and PfGW456L13_5159 are separated by 170 nucleotidesPfGW456L13_5159 and PfGW456L13_145 are separated by 276 nucleotidesPfGW456L13_145 and PfGW456L13_146 overlap by 1 nucleotides PfGW456L13_144 - 3'-to-5' exoribonuclease RNase R, at 164,062 to 166,689 _144 PfGW456L13_5158 - tRNA-Leu-CAG, at 166,915 to 166,998 _5158 PfGW456L13_5159 - tRNA-Leu-CAG, at 167,169 to 167,252 _5159 PfGW456L13_145 - Ferric iron ABC transporter, iron-binding protein, at 167,529 to 168,539 _145 PfGW456L13_146 - Ferric iron ABC transporter, permease protein, at 168,539 to 170,104 _146 Position (kb) 167 168 169Strain fitness (log2 ratio) -2 -1 0 1at 166.710 kb on + strandat 166.710 kb on + strandat 166.712 kb on + strandat 166.731 kb on + strandat 166.737 kb on + strandat 166.760 kb on + strandat 166.760 kb on + strandat 166.760 kb on + strandat 166.763 kb on + strandat 166.763 kb on + strandat 166.763 kb on + strandat 166.763 kb on + strandat 166.763 kb on + strandat 166.763 kb on + strandat 166.774 kb on + strandat 166.774 kb on + strandat 166.774 kb on + strandat 166.774 kb on + strandat 166.874 kb on + strandat 167.018 kb on + strandat 167.084 kb on + strandat 167.085 kb on - strandat 167.130 kb on + strandat 167.131 kb on - strandat 167.350 kb on + strandat 167.350 kb on + strandat 167.350 kb on + strandat 167.351 kb on - strandat 167.351 kb on - strandat 167.377 kb on + strandat 167.377 kb on + strandat 167.377 kb on + strandat 167.377 kb on + strandat 167.377 kb on + strandat 167.377 kb on + strandat 167.377 kb on + strandat 167.377 kb on + strandat 167.377 kb on + strandat 167.377 kb on + strandat 167.377 kb on + strandat 167.378 kb on - strandat 167.378 kb on - strandat 167.378 kb on - strandat 167.378 kb on - strandat 167.378 kb on - strandat 167.378 kb on - strandat 167.378 kb on - strandat 167.378 kb on - strandat 167.453 kb on + strandat 167.543 kb on + strandat 167.543 kb on + strandat 167.544 kb on - strandat 167.634 kb on + strand, within PfGW456L13_145at 167.634 kb on + strand, within PfGW456L13_145at 167.634 kb on + strand, within PfGW456L13_145at 167.635 kb on - strand, within PfGW456L13_145at 167.785 kb on - strand, within PfGW456L13_145at 167.785 kb on - strand, within PfGW456L13_145at 167.785 kb on - strand, within PfGW456L13_145at 167.877 kb on + strand, within PfGW456L13_145at 167.877 kb on + strand, within PfGW456L13_145at 167.877 kb on + strand, within PfGW456L13_145at 167.877 kb on + strand, within PfGW456L13_145at 167.877 kb on + strand, within PfGW456L13_145at 167.878 kb on - strand, within PfGW456L13_145at 167.878 kb on - strand, within PfGW456L13_145at 167.878 kb on - strand, within PfGW456L13_145at 167.878 kb on - strand, within PfGW456L13_145at 167.878 kb on - strand, within PfGW456L13_145at 168.129 kb on + strand, within PfGW456L13_145at 168.129 kb on + strand, within PfGW456L13_145at 168.129 kb on + strand, within PfGW456L13_145at 168.129 kb on + strand, within PfGW456L13_145at 168.129 kb on + strand, within PfGW456L13_145at 168.130 kb on - strand, within PfGW456L13_145at 168.130 kb on - strand, within PfGW456L13_145at 168.130 kb on - strand, within PfGW456L13_145at 168.130 kb on - strand, within PfGW456L13_145at 168.130 kb on - strand, within PfGW456L13_145at 168.130 kb on - strand, within PfGW456L13_145at 168.130 kb on - strand, within PfGW456L13_145at 168.130 kb on - strand, within PfGW456L13_145at 168.184 kb on + strand, within PfGW456L13_145at 168.185 kb on - strand, within PfGW456L13_145at 168.185 kb on - strand, within PfGW456L13_145at 168.185 kb on - strand, within PfGW456L13_145at 168.198 kb on + strand, within PfGW456L13_145at 168.198 kb on + strand, within PfGW456L13_145at 168.198 kb on + strand, within PfGW456L13_145at 168.198 kb on + strand, within PfGW456L13_145at 168.198 kb on + strand, within PfGW456L13_145at 168.198 kb on + strand, within PfGW456L13_145at 168.199 kb on - strand, within PfGW456L13_145at 168.199 kb on - strand, within PfGW456L13_145at 168.199 kb on - strand, within PfGW456L13_145at 168.199 kb on - strand, within PfGW456L13_145at 168.201 kb on + strand, within PfGW456L13_145at 168.201 kb on + strand, within PfGW456L13_145at 168.201 kb on + strand, within PfGW456L13_145at 168.252 kb on + strand, within PfGW456L13_145at 168.252 kb on + strand, within PfGW456L13_145at 168.252 kb on + strand, within PfGW456L13_145at 168.253 kb on - strand, within PfGW456L13_145at 168.253 kb on - strand, within PfGW456L13_145at 168.253 kb on - strand, within PfGW456L13_145at 168.253 kb on - strand, within PfGW456L13_145at 168.351 kb on + strand, within PfGW456L13_145at 168.351 kb on + strand, within PfGW456L13_145at 168.351 kb on + strand, within PfGW456L13_145at 168.351 kb on + strand, within PfGW456L13_145at 168.351 kb on + strand, within PfGW456L13_145at 168.351 kb on + strand, within PfGW456L13_145at 168.352 kb on - strand, within PfGW456L13_145at 168.352 kb on - strand, within PfGW456L13_145at 168.352 kb on - strand, within PfGW456L13_145at 168.552 kb on + strandat 168.662 kb on + strandat 168.662 kb on + strandat 168.662 kb on + strandat 168.663 kb on - strandat 168.663 kb on - strandat 168.663 kb on - strandat 168.714 kb on + strand, within PfGW456L13_146at 168.715 kb on - strand, within PfGW456L13_146at 168.725 kb on + strand, within PfGW456L13_146at 168.725 kb on + strand, within PfGW456L13_146at 168.725 kb on + strand, within PfGW456L13_146at 168.725 kb on + strand, within PfGW456L13_146at 168.725 kb on + strand, within PfGW456L13_146at 168.725 kb on + strand, within PfGW456L13_146at 168.725 kb on + strand, within PfGW456L13_146at 168.725 kb on + strand, within PfGW456L13_146at 168.725 kb on + strand, within PfGW456L13_146at 168.725 kb on + strand, within PfGW456L13_146at 168.725 kb on + strand, within PfGW456L13_146at 168.725 kb on + strand, within PfGW456L13_146at 168.725 kb on + strand, within PfGW456L13_146at 168.725 kb on + strand, within PfGW456L13_146at 168.725 kb on + strand, within PfGW456L13_146at 168.725 kb on + strand, within PfGW456L13_146at 168.725 kb on + strand, within PfGW456L13_146at 168.726 kb on - strand, within PfGW456L13_146at 168.726 kb on - strand, within PfGW456L13_146at 168.726 kb on - strand, within PfGW456L13_146at 168.726 kb on - strand, within PfGW456L13_146at 168.726 kb on - strand, within PfGW456L13_146at 168.726 kb on - strand, within PfGW456L13_146at 168.726 kb on - strand, within PfGW456L13_146at 168.726 kb on - strand, within PfGW456L13_146at 168.726 kb on - strand, within PfGW456L13_146at 168.726 kb on - strand, within PfGW456L13_146at 168.726 kb on - strand, within PfGW456L13_146at 168.971 kb on + strand, within PfGW456L13_146at 169.199 kb on + strand, within PfGW456L13_146at 169.199 kb on + strand, within PfGW456L13_146at 169.199 kb on + strand, within PfGW456L13_146at 169.200 kb on - strand, within PfGW456L13_146at 169.200 kb on - strand, within PfGW456L13_146at 169.200 kb on - strand, within PfGW456L13_146at 169.200 kb on - strand, within PfGW456L13_146at 169.200 kb on - strand, within PfGW456L13_146at 169.200 kb on - strand, within PfGW456L13_146at 169.200 kb on - strand, within PfGW456L13_146at 169.261 kb on - strand, within PfGW456L13_146at 169.261 kb on - strand, within PfGW456L13_146at 169.261 kb on - strand, within PfGW456L13_146at 169.395 kb on - strand, within PfGW456L13_146at 169.395 kb on - strand, within PfGW456L13_146at 169.395 kb on - strand, within PfGW456L13_146at 169.395 kb on - strand, within PfGW456L13_146at 169.448 kb on + strand, within PfGW456L13_146at 169.448 kb on + strand, within PfGW456L13_146

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
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166,710 + -1.1
166,710 + -1.1
166,712 + -0.8
166,731 + -0.2
166,737 + -1.8
166,760 + +0.3
166,760 + -0.2
166,760 + -0.2
166,763 + -0.6
166,763 + -0.9
166,763 + -0.8
166,763 + +0.0
166,763 + -0.1
166,763 + +0.3
166,774 + -0.9
166,774 + -0.5
166,774 + -0.1
166,774 + -1.5
166,874 + -0.3
167,018 + -0.5
167,084 + +0.1
167,085 - -0.3
167,130 + +0.2
167,131 - +0.4
167,350 + +0.2
167,350 + +0.5
167,350 + +0.3
167,351 - -1.3
167,351 - -0.4
167,377 + -0.7
167,377 + +0.2
167,377 + +0.2
167,377 + +0.4
167,377 + +0.7
167,377 + -0.7
167,377 + +0.0
167,377 + -0.3
167,377 + +0.3
167,377 + +0.3
167,377 + -0.9
167,378 - -2.3
167,378 - -0.7
167,378 - -0.6
167,378 - -0.8
167,378 - -0.3
167,378 - -0.6
167,378 - +0.0
167,378 - +0.6
167,453 + -1.3
167,543 + +0.4
167,543 + +0.7
167,544 - -0.1
167,634 + PfGW456L13_145 0.10 +0.7
167,634 + PfGW456L13_145 0.10 -0.0
167,634 + PfGW456L13_145 0.10 -0.1
167,635 - PfGW456L13_145 0.10 +0.3
167,785 - PfGW456L13_145 0.25 -1.1
167,785 - PfGW456L13_145 0.25 -0.5
167,785 - PfGW456L13_145 0.25 -0.1
167,877 + PfGW456L13_145 0.34 -0.1
167,877 + PfGW456L13_145 0.34 -0.7
167,877 + PfGW456L13_145 0.34 +1.1
167,877 + PfGW456L13_145 0.34 +0.9
167,877 + PfGW456L13_145 0.34 +0.2
167,878 - PfGW456L13_145 0.35 -0.7
167,878 - PfGW456L13_145 0.35 +0.7
167,878 - PfGW456L13_145 0.35 +0.5
167,878 - PfGW456L13_145 0.35 -0.4
167,878 - PfGW456L13_145 0.35 +0.8
168,129 + PfGW456L13_145 0.59 +0.2
168,129 + PfGW456L13_145 0.59 -0.5
168,129 + PfGW456L13_145 0.59 -0.2
168,129 + PfGW456L13_145 0.59 -0.6
168,129 + PfGW456L13_145 0.59 -1.6
168,130 - PfGW456L13_145 0.59 -0.1
168,130 - PfGW456L13_145 0.59 +0.2
168,130 - PfGW456L13_145 0.59 -0.3
168,130 - PfGW456L13_145 0.59 +0.2
168,130 - PfGW456L13_145 0.59 +0.0
168,130 - PfGW456L13_145 0.59 +1.1
168,130 - PfGW456L13_145 0.59 +1.7
168,130 - PfGW456L13_145 0.59 +1.3
168,184 + PfGW456L13_145 0.65 +1.2
168,185 - PfGW456L13_145 0.65 +0.9
168,185 - PfGW456L13_145 0.65 +0.0
168,185 - PfGW456L13_145 0.65 +0.5
168,198 + PfGW456L13_145 0.66 -0.5
168,198 + PfGW456L13_145 0.66 +1.0
168,198 + PfGW456L13_145 0.66 +0.5
168,198 + PfGW456L13_145 0.66 -0.0
168,198 + PfGW456L13_145 0.66 +0.1
168,198 + PfGW456L13_145 0.66 +0.5
168,199 - PfGW456L13_145 0.66 +0.2
168,199 - PfGW456L13_145 0.66 +0.2
168,199 - PfGW456L13_145 0.66 +0.3
168,199 - PfGW456L13_145 0.66 -0.1
168,201 + PfGW456L13_145 0.66 +0.3
168,201 + PfGW456L13_145 0.66 -0.4
168,201 + PfGW456L13_145 0.66 -0.3
168,252 + PfGW456L13_145 0.72 -1.1
168,252 + PfGW456L13_145 0.72 +0.4
168,252 + PfGW456L13_145 0.72 -0.7
168,253 - PfGW456L13_145 0.72 +1.4
168,253 - PfGW456L13_145 0.72 +0.8
168,253 - PfGW456L13_145 0.72 -0.5
168,253 - PfGW456L13_145 0.72 -0.6
168,351 + PfGW456L13_145 0.81 -1.5
168,351 + PfGW456L13_145 0.81 +0.1
168,351 + PfGW456L13_145 0.81 +0.4
168,351 + PfGW456L13_145 0.81 +0.1
168,351 + PfGW456L13_145 0.81 +0.2
168,351 + PfGW456L13_145 0.81 +0.3
168,352 - PfGW456L13_145 0.81 -0.2
168,352 - PfGW456L13_145 0.81 -0.1
168,352 - PfGW456L13_145 0.81 -0.1
168,552 + -0.2
168,662 + -0.5
168,662 + +0.9
168,662 + -0.3
168,663 - +0.2
168,663 - +0.2
168,663 - -0.3
168,714 + PfGW456L13_146 0.11 +0.8
168,715 - PfGW456L13_146 0.11 +0.3
168,725 + PfGW456L13_146 0.12 +0.1
168,725 + PfGW456L13_146 0.12 -0.1
168,725 + PfGW456L13_146 0.12 +0.3
168,725 + PfGW456L13_146 0.12 -1.8
168,725 + PfGW456L13_146 0.12 +0.7
168,725 + PfGW456L13_146 0.12 +0.2
168,725 + PfGW456L13_146 0.12 -0.5
168,725 + PfGW456L13_146 0.12 +0.2
168,725 + PfGW456L13_146 0.12 -0.2
168,725 + PfGW456L13_146 0.12 +0.5
168,725 + PfGW456L13_146 0.12 +0.4
168,725 + PfGW456L13_146 0.12 -0.7
168,725 + PfGW456L13_146 0.12 -0.9
168,725 + PfGW456L13_146 0.12 +0.0
168,725 + PfGW456L13_146 0.12 +0.1
168,725 + PfGW456L13_146 0.12 +0.2
168,725 + PfGW456L13_146 0.12 +0.9
168,726 - PfGW456L13_146 0.12 -1.6
168,726 - PfGW456L13_146 0.12 -0.2
168,726 - PfGW456L13_146 0.12 +0.4
168,726 - PfGW456L13_146 0.12 +0.6
168,726 - PfGW456L13_146 0.12 +0.2
168,726 - PfGW456L13_146 0.12 +0.2
168,726 - PfGW456L13_146 0.12 +0.1
168,726 - PfGW456L13_146 0.12 -0.2
168,726 - PfGW456L13_146 0.12 -0.5
168,726 - PfGW456L13_146 0.12 -0.3
168,726 - PfGW456L13_146 0.12 +1.3
168,971 + PfGW456L13_146 0.28 -0.2
169,199 + PfGW456L13_146 0.42 -0.2
169,199 + PfGW456L13_146 0.42 +1.2
169,199 + PfGW456L13_146 0.42 -0.7
169,200 - PfGW456L13_146 0.42 +0.2
169,200 - PfGW456L13_146 0.42 +0.3
169,200 - PfGW456L13_146 0.42 -0.7
169,200 - PfGW456L13_146 0.42 -0.1
169,200 - PfGW456L13_146 0.42 +0.6
169,200 - PfGW456L13_146 0.42 +0.6
169,200 - PfGW456L13_146 0.42 -0.5
169,261 - PfGW456L13_146 0.46 +0.4
169,261 - PfGW456L13_146 0.46 +0.4
169,261 - PfGW456L13_146 0.46 +0.7
169,395 - PfGW456L13_146 0.55 -1.2
169,395 - PfGW456L13_146 0.55 +0.0
169,395 - PfGW456L13_146 0.55 +1.2
169,395 - PfGW456L13_146 0.55 +0.7
169,448 + PfGW456L13_146 0.58 +0.6
169,448 + PfGW456L13_146 0.58 +0.2

Or see this region's nucleotide sequence