Experiment: Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_141 and PfGW456L13_142 are separated by 28 nucleotides PfGW456L13_142 and PfGW456L13_143 are separated by 305 nucleotides PfGW456L13_143 and PfGW456L13_144 overlap by 4 nucleotides
PfGW456L13_141 - SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-independent, at 162,311 to 162,541
_141
PfGW456L13_142 - SSU ribosomal protein S6p, at 162,570 to 162,992
_142
PfGW456L13_143 - 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-), at 163,298 to 164,065
_143
PfGW456L13_144 - 3'-to-5' exoribonuclease RNase R, at 164,062 to 166,689
_144
Position (kb) 163
164
165 Strain fitness (log2 ratio) -2
-1
0
1
2 at 163.142 kb on + strand at 163.143 kb on - strand at 163.154 kb on - strand at 163.182 kb on + strand at 163.183 kb on - strand at 163.237 kb on + strand at 163.237 kb on + strand at 163.237 kb on + strand at 163.238 kb on - strand at 163.238 kb on - strand at 163.250 kb on + strand at 163.250 kb on + strand at 163.426 kb on - strand, within PfGW456L13_143 at 163.512 kb on + strand, within PfGW456L13_143 at 163.513 kb on - strand, within PfGW456L13_143 at 163.513 kb on - strand, within PfGW456L13_143 at 163.865 kb on + strand, within PfGW456L13_143 at 163.865 kb on + strand, within PfGW456L13_143 at 163.865 kb on + strand, within PfGW456L13_143 at 163.865 kb on + strand, within PfGW456L13_143 at 163.866 kb on - strand, within PfGW456L13_143 at 164.027 kb on + strand at 164.027 kb on + strand at 164.027 kb on + strand at 164.028 kb on - strand at 164.028 kb on - strand at 164.028 kb on - strand at 164.036 kb on + strand at 164.036 kb on + strand at 164.036 kb on + strand at 164.036 kb on + strand at 164.036 kb on + strand at 164.036 kb on + strand at 164.036 kb on + strand at 164.037 kb on - strand at 164.037 kb on - strand at 164.037 kb on - strand at 164.037 kb on - strand at 164.037 kb on - strand at 164.037 kb on - strand at 164.037 kb on - strand at 164.037 kb on - strand at 164.043 kb on + strand at 164.043 kb on + strand at 164.043 kb on + strand at 164.043 kb on + strand at 164.044 kb on - strand at 164.044 kb on - strand at 164.044 kb on - strand at 164.077 kb on - strand at 164.134 kb on - strand at 164.317 kb on + strand at 164.317 kb on + strand at 164.317 kb on + strand at 164.318 kb on - strand at 164.577 kb on - strand, within PfGW456L13_144 at 164.577 kb on - strand, within PfGW456L13_144 at 164.579 kb on + strand, within PfGW456L13_144 at 164.621 kb on + strand, within PfGW456L13_144 at 164.621 kb on + strand, within PfGW456L13_144 at 164.621 kb on + strand, within PfGW456L13_144 at 164.621 kb on + strand, within PfGW456L13_144 at 164.625 kb on + strand, within PfGW456L13_144 at 164.626 kb on - strand, within PfGW456L13_144 at 164.731 kb on + strand, within PfGW456L13_144 at 164.731 kb on + strand, within PfGW456L13_144 at 164.731 kb on + strand, within PfGW456L13_144 at 164.731 kb on + strand, within PfGW456L13_144 at 164.732 kb on - strand, within PfGW456L13_144 at 164.732 kb on - strand, within PfGW456L13_144 at 164.732 kb on - strand, within PfGW456L13_144 at 164.954 kb on + strand, within PfGW456L13_144
Per-strain Table
Position Strand Gene LocusTag Fraction Zinc 1 mM remove 163,142 + +0.0 163,143 - -0.4 163,154 - +0.3 163,182 + -0.0 163,183 - -0.0 163,237 + +0.1 163,237 + +0.8 163,237 + -0.9 163,238 - -0.4 163,238 - +0.3 163,250 + +0.3 163,250 + -0.8 163,426 - PfGW456L13_143 0.17 -0.4 163,512 + PfGW456L13_143 0.28 -0.9 163,513 - PfGW456L13_143 0.28 -0.1 163,513 - PfGW456L13_143 0.28 -0.7 163,865 + PfGW456L13_143 0.74 -0.8 163,865 + PfGW456L13_143 0.74 -0.6 163,865 + PfGW456L13_143 0.74 -0.4 163,865 + PfGW456L13_143 0.74 +0.3 163,866 - PfGW456L13_143 0.74 +0.1 164,027 + +1.2 164,027 + +0.7 164,027 + -0.8 164,028 - +0.2 164,028 - -0.2 164,028 - -0.9 164,036 + +0.1 164,036 + +0.0 164,036 + -0.4 164,036 + +0.3 164,036 + -0.4 164,036 + -0.2 164,036 + +0.2 164,037 - +0.7 164,037 - +0.0 164,037 - +0.3 164,037 - -0.4 164,037 - +0.4 164,037 - -0.1 164,037 - -0.9 164,037 - -0.1 164,043 + +0.1 164,043 + +0.1 164,043 + -1.5 164,043 + -1.2 164,044 - +0.5 164,044 - +2.0 164,044 - -1.3 164,077 - -0.3 164,134 - -0.4 164,317 + -1.1 164,317 + -0.6 164,317 + -2.4 164,318 - -1.6 164,577 - PfGW456L13_144 0.20 +0.9 164,577 - PfGW456L13_144 0.20 -1.3 164,579 + PfGW456L13_144 0.20 -2.0 164,621 + PfGW456L13_144 0.21 -0.7 164,621 + PfGW456L13_144 0.21 -0.4 164,621 + PfGW456L13_144 0.21 +0.3 164,621 + PfGW456L13_144 0.21 +1.0 164,625 + PfGW456L13_144 0.21 -1.6 164,626 - PfGW456L13_144 0.21 +0.9 164,731 + PfGW456L13_144 0.25 -0.1 164,731 + PfGW456L13_144 0.25 +0.7 164,731 + PfGW456L13_144 0.25 -0.0 164,731 + PfGW456L13_144 0.25 +0.2 164,732 - PfGW456L13_144 0.25 -0.2 164,732 - PfGW456L13_144 0.25 -1.4 164,732 - PfGW456L13_144 0.25 -0.7 164,954 + PfGW456L13_144 0.34 -2.1
Or see this region's nucleotide sequence