Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1409

Experiment: Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1408 and PfGW456L13_1409 are separated by 65 nucleotidesPfGW456L13_1409 and PfGW456L13_1410 are separated by 117 nucleotides PfGW456L13_1408 - Permease of the drug/metabolite transporter (DMT) superfamily, at 1,555,774 to 1,556,715 _1408 PfGW456L13_1409 - ATP-dependent RNA helicase PA3950, at 1,556,781 to 1,558,121 _1409 PfGW456L13_1410 - NAD(FAD)-utilizing dehydrogenases, at 1,558,239 to 1,559,480 _1410 Position (kb) 1556 1557 1558 1559Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1555.800 kb on - strandat 1555.828 kb on + strandat 1555.828 kb on + strandat 1555.828 kb on + strandat 1555.828 kb on + strandat 1555.828 kb on + strandat 1555.828 kb on + strandat 1555.828 kb on + strandat 1555.828 kb on + strandat 1555.828 kb on + strandat 1555.828 kb on + strandat 1555.828 kb on + strandat 1555.828 kb on + strandat 1555.829 kb on - strandat 1555.829 kb on - strandat 1555.829 kb on - strandat 1555.829 kb on - strandat 1555.829 kb on - strandat 1555.829 kb on - strandat 1555.829 kb on - strandat 1555.829 kb on - strandat 1555.829 kb on - strandat 1555.829 kb on - strandat 1555.829 kb on - strandat 1555.829 kb on - strandat 1555.849 kb on + strandat 1555.849 kb on + strandat 1555.850 kb on - strandat 1555.850 kb on - strandat 1555.876 kb on + strand, within PfGW456L13_1408at 1555.876 kb on + strand, within PfGW456L13_1408at 1555.877 kb on - strand, within PfGW456L13_1408at 1555.933 kb on + strand, within PfGW456L13_1408at 1555.933 kb on + strand, within PfGW456L13_1408at 1555.933 kb on + strand, within PfGW456L13_1408at 1555.933 kb on + strand, within PfGW456L13_1408at 1555.933 kb on + strand, within PfGW456L13_1408at 1555.934 kb on - strand, within PfGW456L13_1408at 1555.934 kb on - strand, within PfGW456L13_1408at 1555.934 kb on - strand, within PfGW456L13_1408at 1556.106 kb on + strand, within PfGW456L13_1408at 1556.106 kb on + strand, within PfGW456L13_1408at 1556.106 kb on + strand, within PfGW456L13_1408at 1556.107 kb on - strand, within PfGW456L13_1408at 1556.122 kb on + strand, within PfGW456L13_1408at 1556.122 kb on + strand, within PfGW456L13_1408at 1556.123 kb on - strand, within PfGW456L13_1408at 1556.139 kb on + strand, within PfGW456L13_1408at 1556.139 kb on + strand, within PfGW456L13_1408at 1556.140 kb on - strand, within PfGW456L13_1408at 1556.140 kb on - strand, within PfGW456L13_1408at 1556.294 kb on + strand, within PfGW456L13_1408at 1556.295 kb on - strand, within PfGW456L13_1408at 1556.428 kb on + strand, within PfGW456L13_1408at 1556.428 kb on + strand, within PfGW456L13_1408at 1556.429 kb on - strand, within PfGW456L13_1408at 1556.467 kb on + strand, within PfGW456L13_1408at 1556.467 kb on + strand, within PfGW456L13_1408at 1556.467 kb on + strand, within PfGW456L13_1408at 1556.467 kb on + strand, within PfGW456L13_1408at 1556.467 kb on + strand, within PfGW456L13_1408at 1556.468 kb on - strand, within PfGW456L13_1408at 1556.468 kb on - strand, within PfGW456L13_1408at 1556.468 kb on - strand, within PfGW456L13_1408at 1556.468 kb on - strand, within PfGW456L13_1408at 1556.473 kb on + strand, within PfGW456L13_1408at 1556.473 kb on + strand, within PfGW456L13_1408at 1556.473 kb on + strand, within PfGW456L13_1408at 1556.473 kb on + strand, within PfGW456L13_1408at 1556.473 kb on + strand, within PfGW456L13_1408at 1556.473 kb on + strand, within PfGW456L13_1408at 1556.473 kb on + strand, within PfGW456L13_1408at 1556.473 kb on + strand, within PfGW456L13_1408at 1556.473 kb on + strand, within PfGW456L13_1408at 1556.473 kb on + strand, within PfGW456L13_1408at 1556.473 kb on + strand, within PfGW456L13_1408at 1556.473 kb on + strand, within PfGW456L13_1408at 1556.473 kb on + strand, within PfGW456L13_1408at 1556.474 kb on - strand, within PfGW456L13_1408at 1556.474 kb on - strand, within PfGW456L13_1408at 1556.474 kb on - strand, within PfGW456L13_1408at 1556.474 kb on - strand, within PfGW456L13_1408at 1556.474 kb on - strand, within PfGW456L13_1408at 1556.474 kb on - strand, within PfGW456L13_1408at 1556.474 kb on - strand, within PfGW456L13_1408at 1556.474 kb on - strand, within PfGW456L13_1408at 1556.512 kb on + strand, within PfGW456L13_1408at 1556.512 kb on + strand, within PfGW456L13_1408at 1556.512 kb on + strand, within PfGW456L13_1408at 1556.512 kb on + strand, within PfGW456L13_1408at 1556.512 kb on + strand, within PfGW456L13_1408at 1556.513 kb on - strand, within PfGW456L13_1408at 1556.513 kb on - strand, within PfGW456L13_1408at 1556.513 kb on - strand, within PfGW456L13_1408at 1556.513 kb on - strand, within PfGW456L13_1408at 1556.513 kb on - strand, within PfGW456L13_1408at 1556.513 kb on - strand, within PfGW456L13_1408at 1556.513 kb on - strand, within PfGW456L13_1408at 1556.513 kb on - strand, within PfGW456L13_1408at 1556.513 kb on - strand, within PfGW456L13_1408at 1556.513 kb on - strand, within PfGW456L13_1408at 1556.518 kb on + strand, within PfGW456L13_1408at 1556.518 kb on + strand, within PfGW456L13_1408at 1556.518 kb on + strand, within PfGW456L13_1408at 1556.519 kb on - strand, within PfGW456L13_1408at 1556.519 kb on - strand, within PfGW456L13_1408at 1556.519 kb on - strand, within PfGW456L13_1408at 1556.519 kb on - strand, within PfGW456L13_1408at 1556.608 kb on - strand, within PfGW456L13_1408at 1556.650 kb on - strandat 1556.713 kb on + strandat 1556.714 kb on - strandat 1556.714 kb on - strandat 1556.769 kb on + strandat 1557.092 kb on + strand, within PfGW456L13_1409at 1557.092 kb on + strand, within PfGW456L13_1409at 1557.093 kb on - strand, within PfGW456L13_1409at 1557.093 kb on - strand, within PfGW456L13_1409at 1557.093 kb on - strand, within PfGW456L13_1409at 1557.093 kb on - strand, within PfGW456L13_1409at 1557.096 kb on + strand, within PfGW456L13_1409at 1557.097 kb on - strand, within PfGW456L13_1409at 1557.097 kb on - strand, within PfGW456L13_1409at 1557.105 kb on + strand, within PfGW456L13_1409at 1557.297 kb on + strand, within PfGW456L13_1409at 1557.297 kb on + strand, within PfGW456L13_1409at 1557.298 kb on - strand, within PfGW456L13_1409at 1557.431 kb on + strand, within PfGW456L13_1409at 1557.432 kb on - strand, within PfGW456L13_1409at 1557.762 kb on + strand, within PfGW456L13_1409at 1557.762 kb on + strand, within PfGW456L13_1409at 1557.762 kb on + strand, within PfGW456L13_1409at 1557.762 kb on + strand, within PfGW456L13_1409at 1557.762 kb on + strand, within PfGW456L13_1409at 1557.762 kb on + strand, within PfGW456L13_1409at 1557.762 kb on + strand, within PfGW456L13_1409at 1557.762 kb on + strand, within PfGW456L13_1409at 1557.762 kb on + strand, within PfGW456L13_1409at 1557.762 kb on + strand, within PfGW456L13_1409at 1557.762 kb on + strand, within PfGW456L13_1409at 1557.762 kb on + strand, within PfGW456L13_1409at 1557.763 kb on - strand, within PfGW456L13_1409at 1557.763 kb on - strand, within PfGW456L13_1409at 1557.763 kb on - strand, within PfGW456L13_1409at 1557.763 kb on - strand, within PfGW456L13_1409at 1557.763 kb on - strand, within PfGW456L13_1409at 1558.112 kb on + strandat 1558.112 kb on + strandat 1558.112 kb on + strandat 1558.112 kb on + strandat 1558.112 kb on + strandat 1558.112 kb on + strandat 1558.113 kb on - strandat 1558.113 kb on - strandat 1558.113 kb on - strandat 1558.139 kb on + strandat 1558.315 kb on + strandat 1558.726 kb on + strand, within PfGW456L13_1410at 1558.726 kb on + strand, within PfGW456L13_1410at 1558.726 kb on + strand, within PfGW456L13_1410at 1558.726 kb on + strand, within PfGW456L13_1410at 1558.726 kb on + strand, within PfGW456L13_1410at 1558.727 kb on - strand, within PfGW456L13_1410at 1558.880 kb on + strand, within PfGW456L13_1410at 1558.905 kb on + strand, within PfGW456L13_1410at 1558.905 kb on + strand, within PfGW456L13_1410at 1559.085 kb on + strand, within PfGW456L13_1410at 1559.085 kb on + strand, within PfGW456L13_1410at 1559.085 kb on + strand, within PfGW456L13_1410at 1559.085 kb on + strand, within PfGW456L13_1410at 1559.085 kb on + strand, within PfGW456L13_1410at 1559.085 kb on + strand, within PfGW456L13_1410at 1559.086 kb on - strand, within PfGW456L13_1410at 1559.086 kb on - strand, within PfGW456L13_1410

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
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1,555,800 - +0.4
1,555,828 + +0.4
1,555,828 + -0.1
1,555,828 + +0.5
1,555,828 + +0.4
1,555,828 + -1.0
1,555,828 + +1.0
1,555,828 + +0.5
1,555,828 + -0.9
1,555,828 + +0.9
1,555,828 + -0.5
1,555,828 + +0.4
1,555,828 + +0.8
1,555,829 - +0.7
1,555,829 - -0.2
1,555,829 - +1.0
1,555,829 - -0.2
1,555,829 - -0.3
1,555,829 - +0.4
1,555,829 - +0.2
1,555,829 - +1.2
1,555,829 - -0.4
1,555,829 - -0.3
1,555,829 - -0.6
1,555,829 - +0.1
1,555,849 + -1.4
1,555,849 + -1.6
1,555,850 - +0.4
1,555,850 - +0.5
1,555,876 + PfGW456L13_1408 0.11 +0.1
1,555,876 + PfGW456L13_1408 0.11 -0.4
1,555,877 - PfGW456L13_1408 0.11 -0.1
1,555,933 + PfGW456L13_1408 0.17 -0.0
1,555,933 + PfGW456L13_1408 0.17 -0.3
1,555,933 + PfGW456L13_1408 0.17 -0.1
1,555,933 + PfGW456L13_1408 0.17 -2.1
1,555,933 + PfGW456L13_1408 0.17 -0.1
1,555,934 - PfGW456L13_1408 0.17 -0.5
1,555,934 - PfGW456L13_1408 0.17 -0.5
1,555,934 - PfGW456L13_1408 0.17 +0.1
1,556,106 + PfGW456L13_1408 0.35 -0.0
1,556,106 + PfGW456L13_1408 0.35 -0.4
1,556,106 + PfGW456L13_1408 0.35 -0.5
1,556,107 - PfGW456L13_1408 0.35 +1.1
1,556,122 + PfGW456L13_1408 0.37 -0.2
1,556,122 + PfGW456L13_1408 0.37 -0.0
1,556,123 - PfGW456L13_1408 0.37 -0.2
1,556,139 + PfGW456L13_1408 0.39 +0.2
1,556,139 + PfGW456L13_1408 0.39 -0.1
1,556,140 - PfGW456L13_1408 0.39 -2.8
1,556,140 - PfGW456L13_1408 0.39 +0.5
1,556,294 + PfGW456L13_1408 0.55 -0.5
1,556,295 - PfGW456L13_1408 0.55 +0.1
1,556,428 + PfGW456L13_1408 0.69 +1.3
1,556,428 + PfGW456L13_1408 0.69 +0.2
1,556,429 - PfGW456L13_1408 0.70 -0.1
1,556,467 + PfGW456L13_1408 0.74 +0.4
1,556,467 + PfGW456L13_1408 0.74 -0.7
1,556,467 + PfGW456L13_1408 0.74 +0.6
1,556,467 + PfGW456L13_1408 0.74 +0.0
1,556,467 + PfGW456L13_1408 0.74 +0.0
1,556,468 - PfGW456L13_1408 0.74 +0.1
1,556,468 - PfGW456L13_1408 0.74 -1.5
1,556,468 - PfGW456L13_1408 0.74 +0.7
1,556,468 - PfGW456L13_1408 0.74 +0.5
1,556,473 + PfGW456L13_1408 0.74 +0.8
1,556,473 + PfGW456L13_1408 0.74 +1.2
1,556,473 + PfGW456L13_1408 0.74 +0.3
1,556,473 + PfGW456L13_1408 0.74 +0.6
1,556,473 + PfGW456L13_1408 0.74 -0.7
1,556,473 + PfGW456L13_1408 0.74 +0.2
1,556,473 + PfGW456L13_1408 0.74 +0.0
1,556,473 + PfGW456L13_1408 0.74 +1.4
1,556,473 + PfGW456L13_1408 0.74 +1.1
1,556,473 + PfGW456L13_1408 0.74 +0.4
1,556,473 + PfGW456L13_1408 0.74 -0.2
1,556,473 + PfGW456L13_1408 0.74 +0.6
1,556,473 + PfGW456L13_1408 0.74 +0.3
1,556,474 - PfGW456L13_1408 0.74 +0.0
1,556,474 - PfGW456L13_1408 0.74 -0.9
1,556,474 - PfGW456L13_1408 0.74 -0.1
1,556,474 - PfGW456L13_1408 0.74 -1.7
1,556,474 - PfGW456L13_1408 0.74 +0.4
1,556,474 - PfGW456L13_1408 0.74 +0.3
1,556,474 - PfGW456L13_1408 0.74 +0.1
1,556,474 - PfGW456L13_1408 0.74 +0.8
1,556,512 + PfGW456L13_1408 0.78 +0.1
1,556,512 + PfGW456L13_1408 0.78 +1.0
1,556,512 + PfGW456L13_1408 0.78 -0.5
1,556,512 + PfGW456L13_1408 0.78 +0.6
1,556,512 + PfGW456L13_1408 0.78 -0.1
1,556,513 - PfGW456L13_1408 0.78 +0.4
1,556,513 - PfGW456L13_1408 0.78 -2.9
1,556,513 - PfGW456L13_1408 0.78 -1.0
1,556,513 - PfGW456L13_1408 0.78 -0.5
1,556,513 - PfGW456L13_1408 0.78 -0.4
1,556,513 - PfGW456L13_1408 0.78 +2.2
1,556,513 - PfGW456L13_1408 0.78 -0.2
1,556,513 - PfGW456L13_1408 0.78 -0.1
1,556,513 - PfGW456L13_1408 0.78 -0.5
1,556,513 - PfGW456L13_1408 0.78 +0.7
1,556,518 + PfGW456L13_1408 0.79 +0.3
1,556,518 + PfGW456L13_1408 0.79 -0.4
1,556,518 + PfGW456L13_1408 0.79 +0.1
1,556,519 - PfGW456L13_1408 0.79 +0.3
1,556,519 - PfGW456L13_1408 0.79 -0.7
1,556,519 - PfGW456L13_1408 0.79 +2.7
1,556,519 - PfGW456L13_1408 0.79 +0.2
1,556,608 - PfGW456L13_1408 0.89 -0.7
1,556,650 - -0.7
1,556,713 + +0.2
1,556,714 - +0.1
1,556,714 - -1.8
1,556,769 + +0.9
1,557,092 + PfGW456L13_1409 0.23 +0.3
1,557,092 + PfGW456L13_1409 0.23 +0.9
1,557,093 - PfGW456L13_1409 0.23 +1.3
1,557,093 - PfGW456L13_1409 0.23 +0.5
1,557,093 - PfGW456L13_1409 0.23 +0.5
1,557,093 - PfGW456L13_1409 0.23 +0.3
1,557,096 + PfGW456L13_1409 0.23 +0.7
1,557,097 - PfGW456L13_1409 0.24 -0.2
1,557,097 - PfGW456L13_1409 0.24 -3.0
1,557,105 + PfGW456L13_1409 0.24 +1.9
1,557,297 + PfGW456L13_1409 0.38 +0.2
1,557,297 + PfGW456L13_1409 0.38 +1.4
1,557,298 - PfGW456L13_1409 0.39 -0.2
1,557,431 + PfGW456L13_1409 0.48 -0.1
1,557,432 - PfGW456L13_1409 0.49 +0.3
1,557,762 + PfGW456L13_1409 0.73 +1.2
1,557,762 + PfGW456L13_1409 0.73 +0.2
1,557,762 + PfGW456L13_1409 0.73 +0.1
1,557,762 + PfGW456L13_1409 0.73 -0.3
1,557,762 + PfGW456L13_1409 0.73 +0.6
1,557,762 + PfGW456L13_1409 0.73 +2.0
1,557,762 + PfGW456L13_1409 0.73 +0.3
1,557,762 + PfGW456L13_1409 0.73 -0.7
1,557,762 + PfGW456L13_1409 0.73 -0.2
1,557,762 + PfGW456L13_1409 0.73 +0.1
1,557,762 + PfGW456L13_1409 0.73 -1.5
1,557,762 + PfGW456L13_1409 0.73 -0.0
1,557,763 - PfGW456L13_1409 0.73 +1.0
1,557,763 - PfGW456L13_1409 0.73 +0.2
1,557,763 - PfGW456L13_1409 0.73 +1.2
1,557,763 - PfGW456L13_1409 0.73 -0.2
1,557,763 - PfGW456L13_1409 0.73 +0.0
1,558,112 + -0.8
1,558,112 + +0.5
1,558,112 + +0.3
1,558,112 + +0.9
1,558,112 + -0.7
1,558,112 + +0.3
1,558,113 - +0.5
1,558,113 - -0.1
1,558,113 - -0.3
1,558,139 + +0.4
1,558,315 + +0.7
1,558,726 + PfGW456L13_1410 0.39 +0.4
1,558,726 + PfGW456L13_1410 0.39 +0.8
1,558,726 + PfGW456L13_1410 0.39 -1.2
1,558,726 + PfGW456L13_1410 0.39 +1.1
1,558,726 + PfGW456L13_1410 0.39 -0.4
1,558,727 - PfGW456L13_1410 0.39 +0.5
1,558,880 + PfGW456L13_1410 0.52 +0.7
1,558,905 + PfGW456L13_1410 0.54 -1.3
1,558,905 + PfGW456L13_1410 0.54 +0.6
1,559,085 + PfGW456L13_1410 0.68 +0.8
1,559,085 + PfGW456L13_1410 0.68 -0.3
1,559,085 + PfGW456L13_1410 0.68 -0.3
1,559,085 + PfGW456L13_1410 0.68 +0.8
1,559,085 + PfGW456L13_1410 0.68 -0.1
1,559,085 + PfGW456L13_1410 0.68 +0.6
1,559,086 - PfGW456L13_1410 0.68 +1.2
1,559,086 - PfGW456L13_1410 0.68 -0.2

Or see this region's nucleotide sequence