Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1063

Experiment: Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1062 and PfGW456L13_1063 are separated by 99 nucleotidesPfGW456L13_1063 and PfGW456L13_1064 are separated by 12 nucleotides PfGW456L13_1062 - Transcriptional regulator, ArsR family / Methyltransferase fusion, at 1,177,216 to 1,178,211 _1062 PfGW456L13_1063 - hypothetical protein, at 1,178,311 to 1,178,550 _1063 PfGW456L13_1064 - Transketolase (EC 2.2.1.1), at 1,178,563 to 1,180,470 _1064 Position (kb) 1178 1179Strain fitness (log2 ratio) -1 0 1 2 3at 1177.408 kb on - strand, within PfGW456L13_1062at 1177.408 kb on - strand, within PfGW456L13_1062at 1177.408 kb on - strand, within PfGW456L13_1062at 1177.408 kb on - strand, within PfGW456L13_1062at 1177.408 kb on - strand, within PfGW456L13_1062at 1177.408 kb on - strand, within PfGW456L13_1062at 1177.412 kb on - strand, within PfGW456L13_1062at 1177.412 kb on - strand, within PfGW456L13_1062at 1177.412 kb on - strand, within PfGW456L13_1062at 1177.412 kb on - strand, within PfGW456L13_1062at 1177.412 kb on - strand, within PfGW456L13_1062at 1177.412 kb on - strand, within PfGW456L13_1062at 1177.412 kb on - strand, within PfGW456L13_1062at 1177.412 kb on - strand, within PfGW456L13_1062at 1177.412 kb on - strand, within PfGW456L13_1062at 1177.412 kb on - strand, within PfGW456L13_1062at 1177.412 kb on - strand, within PfGW456L13_1062at 1177.412 kb on - strand, within PfGW456L13_1062at 1177.412 kb on - strand, within PfGW456L13_1062at 1177.412 kb on - strand, within PfGW456L13_1062at 1177.412 kb on - strand, within PfGW456L13_1062at 1177.424 kb on - strand, within PfGW456L13_1062at 1177.424 kb on - strand, within PfGW456L13_1062at 1177.511 kb on - strand, within PfGW456L13_1062at 1177.567 kb on - strand, within PfGW456L13_1062at 1177.573 kb on - strand, within PfGW456L13_1062at 1177.573 kb on - strand, within PfGW456L13_1062at 1177.880 kb on - strand, within PfGW456L13_1062at 1177.880 kb on - strand, within PfGW456L13_1062at 1177.880 kb on - strand, within PfGW456L13_1062at 1177.880 kb on - strand, within PfGW456L13_1062at 1177.880 kb on - strand, within PfGW456L13_1062at 1177.880 kb on - strand, within PfGW456L13_1062at 1177.880 kb on - strand, within PfGW456L13_1062at 1177.880 kb on - strand, within PfGW456L13_1062at 1178.027 kb on - strand, within PfGW456L13_1062at 1178.027 kb on - strand, within PfGW456L13_1062at 1178.204 kb on - strandat 1178.212 kb on - strandat 1178.212 kb on - strandat 1178.226 kb on - strandat 1178.226 kb on - strandat 1178.226 kb on - strandat 1178.243 kb on - strandat 1178.282 kb on + strandat 1178.282 kb on + strandat 1178.302 kb on + strandat 1178.303 kb on - strandat 1178.348 kb on + strand, within PfGW456L13_1063at 1178.348 kb on + strand, within PfGW456L13_1063at 1178.349 kb on - strand, within PfGW456L13_1063at 1178.349 kb on - strand, within PfGW456L13_1063at 1178.385 kb on + strand, within PfGW456L13_1063at 1178.385 kb on + strand, within PfGW456L13_1063at 1178.385 kb on + strand, within PfGW456L13_1063at 1178.385 kb on + strand, within PfGW456L13_1063at 1178.385 kb on + strand, within PfGW456L13_1063at 1178.386 kb on - strand, within PfGW456L13_1063at 1178.386 kb on - strand, within PfGW456L13_1063at 1178.386 kb on - strand, within PfGW456L13_1063at 1178.386 kb on - strand, within PfGW456L13_1063at 1178.386 kb on - strand, within PfGW456L13_1063at 1178.448 kb on + strand, within PfGW456L13_1063

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
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1,177,408 - PfGW456L13_1062 0.19 -0.5
1,177,408 - PfGW456L13_1062 0.19 +0.4
1,177,408 - PfGW456L13_1062 0.19 +0.0
1,177,408 - PfGW456L13_1062 0.19 -1.0
1,177,408 - PfGW456L13_1062 0.19 -0.7
1,177,408 - PfGW456L13_1062 0.19 -0.1
1,177,412 - PfGW456L13_1062 0.20 -0.5
1,177,412 - PfGW456L13_1062 0.20 -0.8
1,177,412 - PfGW456L13_1062 0.20 -0.2
1,177,412 - PfGW456L13_1062 0.20 +0.7
1,177,412 - PfGW456L13_1062 0.20 -1.0
1,177,412 - PfGW456L13_1062 0.20 +0.9
1,177,412 - PfGW456L13_1062 0.20 +1.1
1,177,412 - PfGW456L13_1062 0.20 +0.5
1,177,412 - PfGW456L13_1062 0.20 -0.0
1,177,412 - PfGW456L13_1062 0.20 +0.4
1,177,412 - PfGW456L13_1062 0.20 +1.8
1,177,412 - PfGW456L13_1062 0.20 -0.1
1,177,412 - PfGW456L13_1062 0.20 -0.5
1,177,412 - PfGW456L13_1062 0.20 +0.4
1,177,412 - PfGW456L13_1062 0.20 -0.6
1,177,424 - PfGW456L13_1062 0.21 +0.3
1,177,424 - PfGW456L13_1062 0.21 -0.4
1,177,511 - PfGW456L13_1062 0.30 -0.1
1,177,567 - PfGW456L13_1062 0.35 -0.4
1,177,573 - PfGW456L13_1062 0.36 -0.5
1,177,573 - PfGW456L13_1062 0.36 +0.4
1,177,880 - PfGW456L13_1062 0.67 +0.7
1,177,880 - PfGW456L13_1062 0.67 +0.8
1,177,880 - PfGW456L13_1062 0.67 +0.3
1,177,880 - PfGW456L13_1062 0.67 +0.3
1,177,880 - PfGW456L13_1062 0.67 -0.8
1,177,880 - PfGW456L13_1062 0.67 +0.1
1,177,880 - PfGW456L13_1062 0.67 -0.4
1,177,880 - PfGW456L13_1062 0.67 -0.4
1,178,027 - PfGW456L13_1062 0.81 +0.0
1,178,027 - PfGW456L13_1062 0.81 -0.4
1,178,204 - +0.4
1,178,212 - +3.2
1,178,212 - +1.0
1,178,226 - -1.0
1,178,226 - +0.1
1,178,226 - +0.6
1,178,243 - -0.6
1,178,282 + +0.6
1,178,282 + -0.1
1,178,302 + -0.4
1,178,303 - +0.6
1,178,348 + PfGW456L13_1063 0.15 -0.2
1,178,348 + PfGW456L13_1063 0.15 +0.1
1,178,349 - PfGW456L13_1063 0.16 -1.5
1,178,349 - PfGW456L13_1063 0.16 +0.0
1,178,385 + PfGW456L13_1063 0.31 +1.1
1,178,385 + PfGW456L13_1063 0.31 +1.5
1,178,385 + PfGW456L13_1063 0.31 +0.5
1,178,385 + PfGW456L13_1063 0.31 -0.1
1,178,385 + PfGW456L13_1063 0.31 +0.1
1,178,386 - PfGW456L13_1063 0.31 +0.9
1,178,386 - PfGW456L13_1063 0.31 -0.1
1,178,386 - PfGW456L13_1063 0.31 +1.2
1,178,386 - PfGW456L13_1063 0.31 +2.2
1,178,386 - PfGW456L13_1063 0.31 +0.3
1,178,448 + PfGW456L13_1063 0.57 +1.0

Or see this region's nucleotide sequence