Strain Fitness in Pseudomonas sp. S08-1 around OH686_20785

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_20775 and OH686_20780 are separated by 28 nucleotidesOH686_20780 and OH686_20785 are separated by 192 nucleotidesOH686_20785 and OH686_20790 are separated by 1 nucleotidesOH686_20790 and OH686_20795 are separated by 26 nucleotides OH686_20775: OH686_20775 - Two-component transcriptional response regulator, LuxR family, at 4,249,615 to 4,250,292 _20775 OH686_20780: OH686_20780 - hypothetical protein, at 4,250,321 to 4,250,746 _20780 OH686_20785: OH686_20785 - YciL protein, at 4,250,939 to 4,251,238 _20785 OH686_20790: OH686_20790 - intracellular septation protein A, at 4,251,240 to 4,251,869 _20790 OH686_20795: OH686_20795 - Predicted metal-dependent (PHP family), at 4,251,896 to 4,252,756 _20795 Position (kb) 4250 4251 4252Strain fitness (log2 ratio) -2 -1 0 1 2at 4249.997 kb on + strand, within OH686_20775at 4249.997 kb on + strand, within OH686_20775at 4249.997 kb on + strand, within OH686_20775at 4249.997 kb on + strand, within OH686_20775at 4249.997 kb on + strand, within OH686_20775at 4249.997 kb on + strand, within OH686_20775at 4249.997 kb on + strand, within OH686_20775at 4249.998 kb on - strand, within OH686_20775at 4249.998 kb on - strand, within OH686_20775at 4249.998 kb on - strand, within OH686_20775at 4250.377 kb on + strand, within OH686_20780at 4250.378 kb on - strand, within OH686_20780at 4250.727 kb on + strandat 4250.727 kb on + strandat 4250.727 kb on + strandat 4250.728 kb on - strandat 4250.728 kb on - strandat 4250.728 kb on - strandat 4250.728 kb on - strandat 4250.728 kb on - strandat 4250.768 kb on + strandat 4250.768 kb on + strandat 4250.768 kb on + strandat 4250.768 kb on + strandat 4250.768 kb on + strandat 4250.768 kb on + strandat 4250.768 kb on + strandat 4250.768 kb on + strandat 4250.768 kb on + strandat 4250.769 kb on - strandat 4250.769 kb on - strandat 4250.769 kb on - strandat 4250.769 kb on - strandat 4250.769 kb on - strandat 4250.769 kb on - strandat 4250.769 kb on - strandat 4250.769 kb on - strandat 4250.769 kb on - strandat 4250.769 kb on - strandat 4250.769 kb on - strandat 4250.769 kb on - strandat 4250.769 kb on - strandat 4250.805 kb on + strandat 4250.805 kb on + strandat 4250.806 kb on - strandat 4250.820 kb on + strandat 4250.820 kb on + strandat 4250.820 kb on + strandat 4250.821 kb on - strandat 4250.821 kb on - strandat 4250.821 kb on - strandat 4250.821 kb on - strandat 4250.821 kb on - strandat 4250.860 kb on + strandat 4250.860 kb on + strandat 4250.861 kb on - strandat 4250.869 kb on + strandat 4250.869 kb on + strandat 4250.869 kb on + strandat 4250.869 kb on + strandat 4250.869 kb on + strandat 4250.869 kb on + strandat 4250.870 kb on - strandat 4250.870 kb on - strandat 4250.924 kb on + strandat 4250.924 kb on + strandat 4250.924 kb on + strandat 4250.924 kb on + strandat 4250.924 kb on + strandat 4250.925 kb on - strandat 4250.982 kb on + strand, within OH686_20785at 4250.983 kb on - strand, within OH686_20785at 4251.231 kb on + strandat 4251.231 kb on + strandat 4251.231 kb on + strandat 4251.231 kb on + strandat 4251.231 kb on + strandat 4251.232 kb on - strandat 4251.232 kb on - strandat 4251.861 kb on + strandat 4251.862 kb on - strandat 4251.862 kb on - strandat 4251.862 kb on - strandat 4251.862 kb on - strandat 4251.862 kb on - strandat 4251.862 kb on - strandat 4251.862 kb on - strandat 4251.862 kb on - strandat 4251.864 kb on + strandat 4251.864 kb on + strandat 4251.864 kb on + strandat 4251.865 kb on - strandat 4251.865 kb on - strandat 4251.865 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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4,249,997 + OH686_20775 0.56 +0.4
4,249,997 + OH686_20775 0.56 -0.6
4,249,997 + OH686_20775 0.56 -0.5
4,249,997 + OH686_20775 0.56 +0.2
4,249,997 + OH686_20775 0.56 -0.4
4,249,997 + OH686_20775 0.56 -0.4
4,249,997 + OH686_20775 0.56 -2.2
4,249,998 - OH686_20775 0.56 +2.6
4,249,998 - OH686_20775 0.56 +0.2
4,249,998 - OH686_20775 0.56 +0.0
4,250,377 + OH686_20780 0.13 +0.9
4,250,378 - OH686_20780 0.13 +0.4
4,250,727 + +0.2
4,250,727 + -0.9
4,250,727 + -0.4
4,250,728 - +1.0
4,250,728 - +0.3
4,250,728 - -0.4
4,250,728 - -0.2
4,250,728 - -0.3
4,250,768 + +1.5
4,250,768 + -1.8
4,250,768 + +0.2
4,250,768 + +0.1
4,250,768 + +0.0
4,250,768 + -0.1
4,250,768 + -0.6
4,250,768 + +0.3
4,250,768 + +0.6
4,250,769 - +0.4
4,250,769 - -0.5
4,250,769 - +0.1
4,250,769 - +0.3
4,250,769 - +0.6
4,250,769 - -0.7
4,250,769 - +0.2
4,250,769 - +0.4
4,250,769 - +0.6
4,250,769 - -0.3
4,250,769 - +0.2
4,250,769 - +0.4
4,250,769 - +1.6
4,250,805 + -0.5
4,250,805 + -0.9
4,250,806 - -0.1
4,250,820 + -1.1
4,250,820 + -0.6
4,250,820 + -0.1
4,250,821 - +2.1
4,250,821 - -0.4
4,250,821 - +0.1
4,250,821 - -0.9
4,250,821 - +0.2
4,250,860 + -1.5
4,250,860 + +0.2
4,250,861 - +0.3
4,250,869 + -0.1
4,250,869 + +0.2
4,250,869 + +0.4
4,250,869 + -0.4
4,250,869 + -0.1
4,250,869 + -0.7
4,250,870 - +0.3
4,250,870 - -0.2
4,250,924 + -0.2
4,250,924 + -0.4
4,250,924 + -0.3
4,250,924 + -0.4
4,250,924 + +0.1
4,250,925 - +1.1
4,250,982 + OH686_20785 0.14 +0.0
4,250,983 - OH686_20785 0.15 -1.2
4,251,231 + -0.6
4,251,231 + -1.9
4,251,231 + -1.1
4,251,231 + +0.2
4,251,231 + -0.8
4,251,232 - +1.3
4,251,232 - -0.5
4,251,861 + -0.1
4,251,862 - -0.6
4,251,862 - +0.7
4,251,862 - +1.3
4,251,862 - +0.5
4,251,862 - -0.2
4,251,862 - -0.1
4,251,862 - -1.1
4,251,862 - -0.3
4,251,864 + +0.5
4,251,864 + -0.2
4,251,864 + -0.7
4,251,865 - -0.5
4,251,865 - +0.4
4,251,865 - +0.2

Or see this region's nucleotide sequence