Strain Fitness in Pseudomonas sp. S08-1 around OH686_17740

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_17730 and OH686_17735 are separated by 28 nucleotidesOH686_17735 and OH686_17740 are separated by 40 nucleotidesOH686_17740 and OH686_17745 are separated by 162 nucleotidesOH686_17745 and OH686_17750 are separated by 106 nucleotides OH686_17730: OH686_17730 - 16S rRNA processing protein RimM, at 3,698,867 to 3,699,400 _17730 OH686_17735: OH686_17735 - tRNA (guanine(37)-N(1))-methyltransferase, at 3,699,429 to 3,700,172 _17735 OH686_17740: OH686_17740 - ribosomal protein L19, at 3,700,213 to 3,700,563 _17740 OH686_17745: OH686_17745 - Acyl-CoA hydrolase , at 3,700,726 to 3,701,136 _17745 OH686_17750: OH686_17750 - tyrosine recombinase XerD, at 3,701,243 to 3,702,139 _17750 Position (kb) 3700 3701Strain fitness (log2 ratio) -2 -1 0 1at 3700.166 kb on + strandat 3700.166 kb on + strandat 3700.166 kb on + strandat 3700.170 kb on + strandat 3700.170 kb on + strandat 3700.170 kb on + strandat 3700.170 kb on + strandat 3700.170 kb on + strandat 3700.170 kb on + strandat 3700.170 kb on + strandat 3700.170 kb on + strandat 3700.175 kb on + strandat 3700.175 kb on + strandat 3700.175 kb on + strandat 3700.175 kb on + strandat 3700.175 kb on + strandat 3700.201 kb on + strandat 3700.201 kb on + strandat 3700.507 kb on + strand, within OH686_17740at 3700.507 kb on + strand, within OH686_17740at 3700.507 kb on + strand, within OH686_17740at 3700.507 kb on + strand, within OH686_17740at 3700.507 kb on + strand, within OH686_17740at 3700.507 kb on + strand, within OH686_17740at 3700.510 kb on + strand, within OH686_17740at 3700.511 kb on - strand, within OH686_17740at 3700.719 kb on + strandat 3700.719 kb on + strandat 3700.719 kb on + strandat 3700.719 kb on + strandat 3700.719 kb on + strandat 3700.719 kb on + strandat 3700.720 kb on - strandat 3700.720 kb on - strandat 3700.807 kb on - strand, within OH686_17745at 3701.021 kb on + strand, within OH686_17745at 3701.021 kb on + strand, within OH686_17745at 3701.021 kb on + strand, within OH686_17745at 3701.022 kb on - strand, within OH686_17745at 3701.022 kb on - strand, within OH686_17745at 3701.022 kb on - strand, within OH686_17745at 3701.038 kb on + strand, within OH686_17745at 3701.038 kb on + strand, within OH686_17745at 3701.038 kb on + strand, within OH686_17745at 3701.038 kb on + strand, within OH686_17745at 3701.038 kb on + strand, within OH686_17745at 3701.038 kb on + strand, within OH686_17745at 3701.038 kb on + strand, within OH686_17745at 3701.038 kb on + strand, within OH686_17745at 3701.038 kb on + strand, within OH686_17745at 3701.038 kb on + strand, within OH686_17745at 3701.038 kb on + strand, within OH686_17745at 3701.039 kb on - strand, within OH686_17745at 3701.039 kb on - strand, within OH686_17745at 3701.039 kb on - strand, within OH686_17745at 3701.039 kb on - strand, within OH686_17745at 3701.039 kb on - strand, within OH686_17745at 3701.039 kb on - strand, within OH686_17745at 3701.039 kb on - strand, within OH686_17745at 3701.039 kb on - strand, within OH686_17745at 3701.039 kb on - strand, within OH686_17745at 3701.039 kb on - strand, within OH686_17745at 3701.039 kb on - strand, within OH686_17745at 3701.197 kb on + strandat 3701.330 kb on + strandat 3701.343 kb on + strand, within OH686_17750at 3701.343 kb on + strand, within OH686_17750at 3701.343 kb on + strand, within OH686_17750at 3701.343 kb on + strand, within OH686_17750at 3701.343 kb on + strand, within OH686_17750at 3701.343 kb on + strand, within OH686_17750at 3701.343 kb on + strand, within OH686_17750at 3701.343 kb on + strand, within OH686_17750at 3701.344 kb on - strand, within OH686_17750at 3701.344 kb on - strand, within OH686_17750at 3701.344 kb on - strand, within OH686_17750at 3701.344 kb on - strand, within OH686_17750at 3701.344 kb on - strand, within OH686_17750at 3701.344 kb on - strand, within OH686_17750at 3701.444 kb on + strand, within OH686_17750at 3701.444 kb on + strand, within OH686_17750at 3701.444 kb on + strand, within OH686_17750at 3701.444 kb on + strand, within OH686_17750at 3701.444 kb on + strand, within OH686_17750at 3701.444 kb on + strand, within OH686_17750at 3701.444 kb on + strand, within OH686_17750at 3701.445 kb on - strand, within OH686_17750at 3701.445 kb on - strand, within OH686_17750at 3701.445 kb on - strand, within OH686_17750at 3701.445 kb on - strand, within OH686_17750at 3701.445 kb on - strand, within OH686_17750at 3701.445 kb on - strand, within OH686_17750at 3701.492 kb on + strand, within OH686_17750at 3701.492 kb on + strand, within OH686_17750at 3701.493 kb on - strand, within OH686_17750at 3701.493 kb on - strand, within OH686_17750at 3701.498 kb on + strand, within OH686_17750at 3701.498 kb on + strand, within OH686_17750at 3701.499 kb on - strand, within OH686_17750at 3701.499 kb on - strand, within OH686_17750

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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3,700,166 + +0.7
3,700,166 + -0.2
3,700,166 + +1.1
3,700,170 + +0.1
3,700,170 + +0.3
3,700,170 + +0.3
3,700,170 + +1.0
3,700,170 + +1.4
3,700,170 + +1.6
3,700,170 + -0.5
3,700,170 + -1.7
3,700,175 + +0.3
3,700,175 + +0.2
3,700,175 + +0.3
3,700,175 + -0.6
3,700,175 + +1.0
3,700,201 + +0.5
3,700,201 + +0.1
3,700,507 + OH686_17740 0.84 -1.2
3,700,507 + OH686_17740 0.84 -1.2
3,700,507 + OH686_17740 0.84 +0.6
3,700,507 + OH686_17740 0.84 -0.4
3,700,507 + OH686_17740 0.84 -0.6
3,700,507 + OH686_17740 0.84 +1.0
3,700,510 + OH686_17740 0.85 -0.6
3,700,511 - OH686_17740 0.85 -0.4
3,700,719 + +0.1
3,700,719 + -0.1
3,700,719 + -0.6
3,700,719 + -0.8
3,700,719 + -0.9
3,700,719 + -0.0
3,700,720 - +0.7
3,700,720 - +0.3
3,700,807 - OH686_17745 0.20 -0.5
3,701,021 + OH686_17745 0.72 -0.3
3,701,021 + OH686_17745 0.72 -0.9
3,701,021 + OH686_17745 0.72 +1.1
3,701,022 - OH686_17745 0.72 -1.0
3,701,022 - OH686_17745 0.72 +0.0
3,701,022 - OH686_17745 0.72 +0.2
3,701,038 + OH686_17745 0.76 -1.5
3,701,038 + OH686_17745 0.76 +0.4
3,701,038 + OH686_17745 0.76 +0.1
3,701,038 + OH686_17745 0.76 -0.9
3,701,038 + OH686_17745 0.76 -0.1
3,701,038 + OH686_17745 0.76 -0.4
3,701,038 + OH686_17745 0.76 +0.3
3,701,038 + OH686_17745 0.76 -0.5
3,701,038 + OH686_17745 0.76 -0.6
3,701,038 + OH686_17745 0.76 -0.7
3,701,038 + OH686_17745 0.76 -0.2
3,701,039 - OH686_17745 0.76 +0.1
3,701,039 - OH686_17745 0.76 -1.8
3,701,039 - OH686_17745 0.76 +0.6
3,701,039 - OH686_17745 0.76 -0.2
3,701,039 - OH686_17745 0.76 +0.5
3,701,039 - OH686_17745 0.76 +0.1
3,701,039 - OH686_17745 0.76 -0.4
3,701,039 - OH686_17745 0.76 -0.1
3,701,039 - OH686_17745 0.76 +0.3
3,701,039 - OH686_17745 0.76 +0.4
3,701,039 - OH686_17745 0.76 -0.4
3,701,197 + +0.3
3,701,330 + -1.3
3,701,343 + OH686_17750 0.11 -0.4
3,701,343 + OH686_17750 0.11 -1.5
3,701,343 + OH686_17750 0.11 +0.1
3,701,343 + OH686_17750 0.11 -0.9
3,701,343 + OH686_17750 0.11 -0.6
3,701,343 + OH686_17750 0.11 -1.7
3,701,343 + OH686_17750 0.11 -0.6
3,701,343 + OH686_17750 0.11 +0.1
3,701,344 - OH686_17750 0.11 -0.4
3,701,344 - OH686_17750 0.11 +1.6
3,701,344 - OH686_17750 0.11 -2.6
3,701,344 - OH686_17750 0.11 +0.4
3,701,344 - OH686_17750 0.11 -0.8
3,701,344 - OH686_17750 0.11 -0.5
3,701,444 + OH686_17750 0.22 -0.0
3,701,444 + OH686_17750 0.22 -1.3
3,701,444 + OH686_17750 0.22 +0.5
3,701,444 + OH686_17750 0.22 +0.3
3,701,444 + OH686_17750 0.22 -0.4
3,701,444 + OH686_17750 0.22 -1.5
3,701,444 + OH686_17750 0.22 +0.6
3,701,445 - OH686_17750 0.23 -0.4
3,701,445 - OH686_17750 0.23 -2.2
3,701,445 - OH686_17750 0.23 +1.5
3,701,445 - OH686_17750 0.23 -1.0
3,701,445 - OH686_17750 0.23 +0.8
3,701,445 - OH686_17750 0.23 -0.4
3,701,492 + OH686_17750 0.28 -1.4
3,701,492 + OH686_17750 0.28 -1.3
3,701,493 - OH686_17750 0.28 -0.2
3,701,493 - OH686_17750 0.28 -0.4
3,701,498 + OH686_17750 0.28 -0.4
3,701,498 + OH686_17750 0.28 +1.0
3,701,499 - OH686_17750 0.29 +0.2
3,701,499 - OH686_17750 0.29 +0.5

Or see this region's nucleotide sequence