Strain Fitness in Pseudomonas sp. S08-1 around OH686_06580

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_06565 and OH686_06570 are separated by 10 nucleotidesOH686_06570 and OH686_06575 are separated by 33 nucleotidesOH686_06575 and OH686_06580 are separated by 60 nucleotidesOH686_06580 and OH686_06585 are separated by 230 nucleotides OH686_06565: OH686_06565 - 23S rRNA (guanine(745)-N(1))-methyltransferase , at 1,334,900 to 1,335,706 _06565 OH686_06570: OH686_06570 - hypothetical protein, at 1,335,717 to 1,336,088 _06570 OH686_06575: OH686_06575 - hypothetical protein, at 1,336,122 to 1,336,532 _06575 OH686_06580: OH686_06580 - Cold shock protein of CSP family, at 1,336,593 to 1,336,802 _06580 OH686_06585: OH686_06585 - hypothetical protein, at 1,337,033 to 1,338,010 _06585 Position (kb) 1336 1337Strain fitness (log2 ratio) -2 -1 0 1at 1335.683 kb on + strandat 1335.741 kb on + strandat 1335.741 kb on + strandat 1335.741 kb on + strandat 1335.742 kb on - strandat 1335.742 kb on - strandat 1335.742 kb on - strandat 1335.742 kb on - strandat 1335.742 kb on - strandat 1336.070 kb on + strandat 1336.071 kb on - strandat 1336.071 kb on - strandat 1336.080 kb on - strandat 1336.119 kb on + strandat 1336.120 kb on - strandat 1336.120 kb on - strandat 1336.141 kb on + strandat 1336.141 kb on + strandat 1336.142 kb on - strandat 1336.142 kb on - strandat 1336.214 kb on + strand, within OH686_06575at 1336.214 kb on + strand, within OH686_06575at 1336.214 kb on + strand, within OH686_06575at 1336.214 kb on + strand, within OH686_06575at 1336.214 kb on + strand, within OH686_06575at 1336.215 kb on - strand, within OH686_06575at 1336.215 kb on - strand, within OH686_06575at 1336.215 kb on - strand, within OH686_06575at 1336.215 kb on - strand, within OH686_06575at 1336.215 kb on - strand, within OH686_06575at 1336.215 kb on - strand, within OH686_06575at 1336.268 kb on + strand, within OH686_06575at 1336.268 kb on + strand, within OH686_06575at 1336.268 kb on + strand, within OH686_06575at 1336.268 kb on + strand, within OH686_06575at 1336.269 kb on - strand, within OH686_06575at 1336.454 kb on + strand, within OH686_06575at 1336.454 kb on + strand, within OH686_06575at 1336.454 kb on + strand, within OH686_06575at 1336.458 kb on + strand, within OH686_06575at 1336.458 kb on + strand, within OH686_06575at 1336.458 kb on + strand, within OH686_06575at 1336.458 kb on + strand, within OH686_06575at 1336.459 kb on - strand, within OH686_06575at 1336.506 kb on + strandat 1336.506 kb on + strandat 1336.506 kb on + strandat 1336.506 kb on + strandat 1336.506 kb on + strandat 1336.506 kb on + strandat 1336.506 kb on + strandat 1336.507 kb on - strandat 1336.507 kb on - strandat 1336.507 kb on - strandat 1336.507 kb on - strandat 1336.605 kb on + strandat 1336.605 kb on + strandat 1336.605 kb on + strandat 1336.606 kb on - strandat 1336.606 kb on - strandat 1336.606 kb on - strandat 1336.606 kb on - strandat 1336.606 kb on - strandat 1336.606 kb on - strandat 1336.606 kb on - strandat 1336.716 kb on + strand, within OH686_06580at 1336.716 kb on + strand, within OH686_06580at 1336.716 kb on + strand, within OH686_06580at 1336.716 kb on + strand, within OH686_06580at 1336.716 kb on + strand, within OH686_06580at 1336.716 kb on + strand, within OH686_06580at 1336.716 kb on + strand, within OH686_06580at 1336.717 kb on - strand, within OH686_06580at 1336.717 kb on - strand, within OH686_06580at 1336.717 kb on - strand, within OH686_06580at 1336.717 kb on - strand, within OH686_06580at 1336.751 kb on - strand, within OH686_06580at 1336.804 kb on - strandat 1336.804 kb on - strandat 1336.952 kb on + strandat 1336.952 kb on + strandat 1336.953 kb on - strandat 1337.085 kb on + strandat 1337.085 kb on + strandat 1337.086 kb on - strandat 1337.086 kb on - strandat 1337.187 kb on + strand, within OH686_06585at 1337.681 kb on + strand, within OH686_06585at 1337.691 kb on + strand, within OH686_06585at 1337.691 kb on + strand, within OH686_06585at 1337.691 kb on + strand, within OH686_06585at 1337.691 kb on + strand, within OH686_06585at 1337.692 kb on - strand, within OH686_06585at 1337.692 kb on - strand, within OH686_06585at 1337.692 kb on - strand, within OH686_06585at 1337.692 kb on - strand, within OH686_06585at 1337.692 kb on - strand, within OH686_06585

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,335,683 + -0.2
1,335,741 + +0.1
1,335,741 + -0.8
1,335,741 + +0.3
1,335,742 - +0.2
1,335,742 - -0.1
1,335,742 - -0.8
1,335,742 - -0.1
1,335,742 - -0.4
1,336,070 + -0.9
1,336,071 - +1.2
1,336,071 - -0.7
1,336,080 - +0.6
1,336,119 + -0.2
1,336,120 - -0.8
1,336,120 - -0.5
1,336,141 + -0.3
1,336,141 + -0.3
1,336,142 - +1.2
1,336,142 - +1.2
1,336,214 + OH686_06575 0.22 +0.4
1,336,214 + OH686_06575 0.22 -0.6
1,336,214 + OH686_06575 0.22 -0.7
1,336,214 + OH686_06575 0.22 +0.3
1,336,214 + OH686_06575 0.22 -0.7
1,336,215 - OH686_06575 0.23 +0.3
1,336,215 - OH686_06575 0.23 +0.1
1,336,215 - OH686_06575 0.23 -1.5
1,336,215 - OH686_06575 0.23 +0.4
1,336,215 - OH686_06575 0.23 +0.8
1,336,215 - OH686_06575 0.23 +0.2
1,336,268 + OH686_06575 0.36 -0.0
1,336,268 + OH686_06575 0.36 -1.8
1,336,268 + OH686_06575 0.36 +0.5
1,336,268 + OH686_06575 0.36 -0.0
1,336,269 - OH686_06575 0.36 +0.1
1,336,454 + OH686_06575 0.81 -0.4
1,336,454 + OH686_06575 0.81 +0.2
1,336,454 + OH686_06575 0.81 +0.4
1,336,458 + OH686_06575 0.82 -0.3
1,336,458 + OH686_06575 0.82 -1.6
1,336,458 + OH686_06575 0.82 +1.1
1,336,458 + OH686_06575 0.82 -1.2
1,336,459 - OH686_06575 0.82 -0.6
1,336,506 + -0.5
1,336,506 + -0.0
1,336,506 + -0.1
1,336,506 + +0.9
1,336,506 + -1.1
1,336,506 + -0.4
1,336,506 + +0.9
1,336,507 - -0.1
1,336,507 - +0.6
1,336,507 - +0.1
1,336,507 - +0.1
1,336,605 + +0.3
1,336,605 + +0.3
1,336,605 + -0.1
1,336,606 - +0.4
1,336,606 - -0.8
1,336,606 - -0.9
1,336,606 - +0.4
1,336,606 - -0.4
1,336,606 - -0.6
1,336,606 - +1.2
1,336,716 + OH686_06580 0.59 +0.4
1,336,716 + OH686_06580 0.59 +0.3
1,336,716 + OH686_06580 0.59 -0.2
1,336,716 + OH686_06580 0.59 +0.1
1,336,716 + OH686_06580 0.59 +0.8
1,336,716 + OH686_06580 0.59 +0.2
1,336,716 + OH686_06580 0.59 +1.3
1,336,717 - OH686_06580 0.59 +0.1
1,336,717 - OH686_06580 0.59 -0.8
1,336,717 - OH686_06580 0.59 -0.4
1,336,717 - OH686_06580 0.59 +0.0
1,336,751 - OH686_06580 0.75 -0.1
1,336,804 - -0.2
1,336,804 - +0.3
1,336,952 + +0.9
1,336,952 + -0.5
1,336,953 - -0.1
1,337,085 + -2.1
1,337,085 + -0.7
1,337,086 - -0.2
1,337,086 - +0.1
1,337,187 + OH686_06585 0.16 -0.3
1,337,681 + OH686_06585 0.66 -0.9
1,337,691 + OH686_06585 0.67 -2.1
1,337,691 + OH686_06585 0.67 +0.0
1,337,691 + OH686_06585 0.67 +1.3
1,337,691 + OH686_06585 0.67 -0.1
1,337,692 - OH686_06585 0.67 +0.3
1,337,692 - OH686_06585 0.67 +0.2
1,337,692 - OH686_06585 0.67 +0.9
1,337,692 - OH686_06585 0.67 +0.6
1,337,692 - OH686_06585 0.67 +0.2

Or see this region's nucleotide sequence